Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8046 Trifolium pratense HOM05D000448 ORTHO05D000291 7.4e-65 250.4 124 100.0
TPR.G28389 Trifolium pratense HOM05D000448 ORTHO05D000291 4.3e-41 171.4 127 68.5
Psat4g184120 Pisum sativum HOM05D000448 ORTHO05D000291 1.5e-28 129.8 123 53.7
Medtr8g019290 Medicago truncatula HOM05D000448 ORTHO05D000291 1.3e-24 116.7 93 64.5
Medtr0470s0010 Medicago truncatula HOM05D000448 ORTHO05D000291 1.1e-23 113.6 92 60.9
Medtr8g019020 Medicago truncatula HOM05D000448 ORTHO05D000291 1.1e-23 113.6 92 60.9
Medtr7g055630 Medicago truncatula HOM05D000448 ORTHO05D000291 2.4e-23 112.5 122 50.8
Medtr8g019110 Medicago truncatula HOM05D000448 ORTHO05D000291 4.1e-23 111.7 90 64.4
Medtr8g019260 Medicago truncatula HOM05D000448 ORTHO05D000291 4.1e-23 111.7 90 64.4
Medtr8g019450 Medicago truncatula HOM05D000448 ORTHO05D000291 9.4e-20 100.5 133 38.3
Medtr8g018980 Medicago truncatula HOM05D000448 ORTHO05D000291 1.2e-19 100.1 130 40.8
Medtr0470s0020 Medicago truncatula HOM05D000448 ORTHO05D000291 8.8e-18 94.0 132 38.6
Medtr8g019050 Medicago truncatula HOM05D000448 ORTHO05D000291 8.8e-18 94.0 132 38.6
Lj3g0008886 Lotus japonicus HOM05D000448 ORTHO05D000291 1.2e-17 93.6 117 45.3
Medtr0514s0010 Medicago truncatula HOM05D000448 ORTHO05D000291 7.5e-17 90.9 130 38.5
Medtr8g019380 Medicago truncatula HOM05D000448 ORTHO05D000291 2.8e-16 89.0 120 38.3
TPR.G28390 Trifolium pratense HOM05D000448 ORTHO05D000291 4.8e-16 88.2 116 42.2
Phvul.010G133900 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 4.5e-14 81.6 116 35.3
Glyma.16G005000 Glycine max HOM05D000448 ORTHO05D000291 5.9e-14 81.3 110 38.2
Glyma.16G005100 Glycine max HOM05D000448 ORTHO05D000291 5.9e-14 81.3 108 39.8
Medtr8g019060 Medicago truncatula HOM05D000448 ORTHO05D000291 5.9e-14 81.3 113 38.1
TPR.G28388 Trifolium pratense HOM05D000448 ORTHO05D000291 5.9e-14 81.3 116 40.5
VMungo0331G1843 Vigna mungo HOM05D000448 ORTHO05D000291 5.9e-14 81.3 111 38.7
Phvul.010G133700 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 7.7e-14 80.9 111 36.9
Glyma.16G006300 Glycine max HOM05D000448 ORTHO05D000291 1.0e-13 80.5 108 38.9
Glyma.07G035800 Glycine max HOM05D000448 ORTHO05D000291 3.8e-13 78.6 96 42.7
VMungo0331G2013 Vigna mungo HOM05D000448 ORTHO05D000291 3.8e-13 78.6 112 39.3
Phvul.010G134000 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 1.1e-12 77.0 98 38.8
Phvul.010G133800 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 2.5e-12 75.9 109 35.8
Medtr8g019280 Medicago truncatula HOM05D000448 ORTHO05D000291 4.2e-12 75.1 71 56.3
COL.COLO4_00210 Corchorus olitorius HOM05D000448 ORTHO05D000291 9.4e-12 73.9 114 37.7
Glyma.15G203551 Glycine max HOM05D000448 ORTHO05D000291 1.2e-11 73.6 111 36.9
VMungo0647G0051 Vigna mungo HOM05D000448 ORTHO05D000291 3.6e-11 72.0 109 33.9
TPR.G16432 Trifolium pratense HOM05D000448 ORTHO05D000291 2.3e-10 69.3 147 29.9
Lalb_Chr25g0289651 Lupinus albus HOM05D000448 ORTHO05D000291 4.0e-10 68.6 99 36.4
QL05p008761 Quercus lobata HOM05D000448 ORTHO05D000291 5.2e-10 68.2 94 37.2
arahy.Tifrunner.gnm1.ann1.KVHK15 Arachis hypogaea HOM05D000448 ORTHO05D000291 2.6e-09 65.9 85 35.3
CANSAT56G2866 Cannabis sativa HOM05D000448 ORTHO05D000291 2.6e-09 65.9 111 37.8
arahy.Tifrunner.gnm1.ann1.T8PCVQ Arachis hypogaea HOM05D000448 ORTHO05D000291 3.4e-09 65.5 86 33.7
CiPaw.03G112400 Carya illinoinensis HOM05D000448 ORTHO05D000291 3.4e-09 65.5 124 33.1
Phvul.010G094100 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 3.4e-09 65.5 98 34.7
Medtr8g019440 Medicago truncatula HOM05D000448 ORTHO05D000291 5.7e-09 64.7 88 39.8
arahy.Tifrunner.gnm1.ann1.JH3Q74 Arachis hypogaea HOM05D000448 ORTHO05D000291 7.5e-09 64.3 86 33.7
FAN06G0545 Fragaria x ananassa HOM05D000448 ORTHO05D000291 7.5e-09 64.3 126 32.5
PGR031G3266 Punica granatum HOM05D000448 ORTHO05D000291 7.5e-09 64.3 125 33.6
CiPaw.03G112000 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.7e-08 63.2 123 34.1
Glyma.07G035700 Glycine max HOM05D000448 ORTHO05D000291 2.2e-08 62.8 57 47.4
VMungo1383G3639 Vigna mungo HOM05D000448 ORTHO05D000291 2.2e-08 62.8 121 32.2
Lj1A658G6 Lonicera japonica HOM05D000448 ORTHO05D000291 3.7e-08 62.0 127 32.3
CANSAT11G0836 Cannabis sativa HOM05D000448 ORTHO05D000291 4.9e-08 61.6 111 34.2
arahy.Tifrunner.gnm1.ann1.FECP0X Arachis hypogaea HOM05D000448 ORTHO05D000291 6.3e-08 61.2 110 31.8
CARHR088760 Cardamine hirsuta HOM05D000448 ORTHO05D000291 6.3e-08 61.2 107 34.6
Glyma.13G130300 Glycine max HOM05D000448 ORTHO05D000291 6.3e-08 61.2 99 35.4
Prupe.3G154900 Prunus persica HOM05D000448 ORTHO05D000291 6.3e-08 61.2 118 32.2
arahy.Tifrunner.gnm1.ann1.ZI8BLB Arachis hypogaea HOM05D000448 ORTHO05D000291 8.3e-08 60.8 92 34.8
FAN03G1619 Fragaria x ananassa HOM05D000448 ORTHO05D000291 8.3e-08 60.8 126 33.3
Phvul.007G156400 Phaseolus vulgaris HOM05D000448 ORTHO05D000291 8.3e-08 60.8 120 31.7
AL3G26140 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 1.1e-07 60.5 106 34.0
AL795U10010 Arabidopsis lyrata HOM05D000448 ORTHO05D000291 1.1e-07 60.5 106 34.0
Lj3g0009106 Lotus japonicus HOM05D000448 ORTHO05D000291 1.1e-07 60.5 85 41.2
arahy.Tifrunner.gnm1.ann1.PR1UBX Arachis hypogaea HOM05D000448 ORTHO05D000291 1.4e-07 60.1 92 34.8
Carub.0003s1352 Capsella rubella HOM05D000448 ORTHO05D000291 1.4e-07 60.1 105 33.3
Cfa019118 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.4e-07 60.1 109 33.9
Duzib192G1008 Durio zibethinus HOM05D000448 ORTHO05D000291 1.4e-07 60.1 106 30.2
Lj3g0007023 Lotus japonicus HOM05D000448 ORTHO05D000291 1.4e-07 60.1 97 36.1
C05p53780 Brassica napus HOM05D000448 ORTHO05D000291 1.8e-07 59.7 108 32.4
CiPaw.03G111300 Carya illinoinensis HOM05D000448 ORTHO05D000291 1.8e-07 59.7 117 34.2
PGR031G0346 Punica granatum HOM05D000448 ORTHO05D000291 1.8e-07 59.7 124 31.5
arahy.Tifrunner.gnm1.ann1.7JS8RB Arachis hypogaea HOM05D000448 ORTHO05D000291 2.4e-07 59.3 85 32.9
Psat6g065480 Pisum sativum HOM05D000448 ORTHO05D000291 2.4e-07 59.3 127 29.9
SalBow4G0505 Salvia bowleyana HOM05D000448 ORTHO05D000291 2.4e-07 59.3 104 35.6
Prupe.2G107700 Prunus persica HOM05D000448 ORTHO05D000291 3.1e-07 58.9 101 33.7
BcaC06g34956 Brassica carinata HOM05D000448 ORTHO05D000291 4.1e-07 58.5 118 33.9
BolC7t42665H Brassica oleracea HOM05D000448 ORTHO05D000291 4.1e-07 58.5 118 33.9
COL.COLO4_30802 Corchorus olitorius HOM05D000448 ORTHO05D000291 4.1e-07 58.5 91 35.2
Glyma.13G202000 Glycine max HOM05D000448 ORTHO05D000291 4.1e-07 58.5 122 29.5
Medtr7g087540 Medicago truncatula HOM05D000448 ORTHO05D000291 4.1e-07 58.5 93 34.4
BolC5t34046H Brassica oleracea HOM05D000448 ORTHO05D000291 5.4e-07 58.2 108 31.5
QL05p008866 Quercus lobata HOM05D000448 ORTHO05D000291 5.4e-07 58.2 102 34.3
TPR.G23650 Trifolium pratense HOM05D000448 ORTHO05D000291 5.4e-07 58.2 100 34.0
AT3G13950 Arabidopsis thaliana HOM05D000448 ORTHO05D000291 7.0e-07 57.8 109 31.2
Glyma.10G042950 Glycine max HOM05D000448 ORTHO05D000291 7.0e-07 57.8 119 31.9
A05p35470 Brassica napus HOM05D000448 ORTHO05D000291 9.2e-07 57.4 108 31.5
BraA05t22357Z Brassica rapa HOM05D000448 ORTHO05D000291 9.2e-07 57.4 108 31.5
AUR62031816 Chenopodium quinoa HOM05D000448 ORTHO05D000291 9.2e-07 57.4 90 33.3
Eucgr.C01737 Eucalyptus grandis HOM05D000448 ORTHO05D000291 9.2e-07 57.4 87 33.3
Lsat_1_v5_gn_5_78760 Lactuca sativa HOM05D000448 ORTHO05D000291 9.2e-07 57.4 95 34.7
Medtr1g069110 Medicago truncatula HOM05D000448 ORTHO05D000291 9.2e-07 57.4 120 35.0
PGR083G0620 Punica granatum HOM05D000448 ORTHO05D000291 9.2e-07 57.4 109 30.3
Duzib168G2221 Durio zibethinus HOM05D000448 ORTHO05D000291 1.2e-06 57.0 106 34.9
CANSAT56G0856 Cannabis sativa HOM05D000448 ORTHO05D000291 1.6e-06 56.6 89 29.2
Cfa007125 Carpinus fangiana HOM05D000448 ORTHO05D000291 1.6e-06 56.6 112 30.4
MD12G1214100 Malus domestica HOM05D000448 ORTHO05D000291 1.6e-06 56.6 115 31.3
Nn3g19311 Nelumbo nucifera HOM05D000448 ORTHO05D000291 1.6e-06 56.6 94 34.0
Prupe.3G154100 Prunus persica HOM05D000448 ORTHO05D000291 1.6e-06 56.6 90 34.4
Prupe.3G154300 Prunus persica HOM05D000448 ORTHO05D000291 1.6e-06 56.6 90 34.4
Sed0015187 Sechium edule HOM05D000448 ORTHO05D000291 1.6e-06 56.6 94 35.1
Cfa013308 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.0e-06 56.2 106 34.0
Duzib192G0934 Durio zibethinus HOM05D000448 ORTHO05D000291 2.0e-06 56.2 106 28.3
PGR031G2901 Punica granatum HOM05D000448 ORTHO05D000291 2.0e-06 56.2 105 32.4
SalBow4G2869 Salvia bowleyana HOM05D000448 ORTHO05D000291 2.0e-06 56.2 104 34.6
Cfa019709 Carpinus fangiana HOM05D000448 ORTHO05D000291 2.7e-06 55.8 91 35.2
CsaV3_2G016990 Cucumis sativus L. HOM05D000448 ORTHO05D000291 2.7e-06 55.8 110 30.9
Eucgr.C00701 Eucalyptus grandis HOM05D000448 ORTHO05D000291 2.7e-06 55.8 89 32.6
MD12G1213300 Malus domestica HOM05D000448 ORTHO05D000291 2.7e-06 55.8 108 29.6
PGR083G2444 Punica granatum HOM05D000448 ORTHO05D000291 2.7e-06 55.8 89 33.7
Sc21g0003250 Simmondsia chinensis HOM05D000448 ORTHO05D000291 2.7e-06 55.8 104 31.7
AT4G13266 Arabidopsis thaliana HOM05D000448 ORTHO05D000291 3.5e-06 55.5 105 32.4
BcaB06g25417 Brassica carinata HOM05D000448 ORTHO05D000291 3.5e-06 55.5 107 30.8
Cfa019724 Carpinus fangiana HOM05D000448 ORTHO05D000291 3.5e-06 55.5 113 32.7
Prupe.3G155300 Prunus persica HOM05D000264 ORTHO05D000152 3.5e-06 55.5 90 34.4
Sp3g12190 Schrenkiella parvula HOM05D000448 ORTHO05D000291 3.5e-06 55.5 107 30.8
Aa31LG2G18310 Aethionema arabicum HOM05D000448 ORTHO05D000291 4.5e-06 55.1 94 33.0
vmacro20893 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 4.5e-06 55.1 97 37.1
CiPaw.03G111800 Carya illinoinensis HOM05D000448 ORTHO05D000291 5.9e-06 54.7 122 29.5
Duzib133G0800 Durio zibethinus HOM05D000448 ORTHO05D000291 5.9e-06 54.7 107 37.4
Hma1.2p1_0231F.1_g097550 Hydrangea macrophylla HOM05D000448 ORTHO05D000291 5.9e-06 54.7 92 35.9
MD12G1231100 Malus domestica HOM05D000480 ORTHO05D000313 5.9e-06 54.7 101 31.7
Nitab4.5_0000286g0030 Nicotiana tabacum HOM05D000448 ORTHO05D000291 5.9e-06 54.7 95 33.7
Psat3g083880 Pisum sativum HOM05D000448 ORTHO05D000291 5.9e-06 54.7 93 35.5
PGR142G2131 Punica granatum HOM05D000448 ORTHO05D000291 5.9e-06 54.7 106 32.1
PGSC0003DMG400013763 Solanum tuberosum HOM05D000448 ORTHO05D000291 5.9e-06 54.7 93 33.3
MSTRG.12046 Avicennia marina HOM05D000448 ORTHO05D000291 7.7e-06 54.3 94 34.0
EL10Ac7g17810 Beta vulgaris HOM05D000448 ORTHO05D000291 7.7e-06 54.3 90 31.1
EL10Ac9g22364 Beta vulgaris HOM05D000448 ORTHO05D000291 7.7e-06 54.3 90 31.1
Migut.A00934 Erythranthe guttata HOM05D000448 ORTHO05D000291 7.7e-06 54.3 94 36.2
Eucgr.B00705 Eucalyptus grandis HOM05D000448 ORTHO05D000291 7.7e-06 54.3 114 30.7
Eucgr.C00694 Eucalyptus grandis HOM05D000448 ORTHO05D000291 7.7e-06 54.3 108 29.6
Eucgr.C01650 Eucalyptus grandis HOM05D000448 ORTHO05D000291 7.7e-06 54.3 87 32.2
Lsat_1_v5_gn_5_78720 Lactuca sativa HOM05D000448 ORTHO05D000291 7.7e-06 54.3 94 36.2
RcHm_v2.0_Chr1g0341021 Rosa chinensis HOM05D000448 ORTHO05D000291 7.7e-06 54.3 95 32.6
RcHm_v2.0_Chr3g0490431 Rosa chinensis HOM05D000448 ORTHO05D000291 7.7e-06 54.3 98 32.7
TAR383G0566 Trochodendron aralioides HOM05D000448 ORTHO05D000313 7.7e-06 54.3 90 34.4


User provided reference genes

Program Settings