Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G8014 Trifolium pratense HOM05D000344 ORTHO05D005296 1.1e-72 276.6 136 100.0
TPR.G24857 Trifolium pratense HOM05D000344 ORTHO05D005296 4.6e-28 128.3 84 77.4
Medtr4g130940 Medicago truncatula HOM05D000344 ORTHO05D005296 1.5e-26 123.2 85 74.1
Psat4g109520 Pisum sativum HOM05D000344 ORTHO05D005296 1.5e-26 123.2 85 72.9
Ca_21122_v3 Cicer arietinum L. HOM05D000344 ORTHO05D005296 3.3e-26 122.1 86 74.4
Phvul.003G156400 Phaseolus vulgaris HOM05D000344 ORTHO05D005296 3.3e-26 122.1 85 67.1
VMungo1215G2428 Vigna mungo HOM05D000344 ORTHO05D005296 4.3e-26 121.7 85 69.4
Lalb_Chr13g0300881 Lupinus albus HOM05D000344 ORTHO05D005296 3.7e-25 118.6 85 68.2
Lj4g0019888 Lotus japonicus HOM05D000344 ORTHO05D005296 6.9e-24 114.4 85 65.9
arahy.Tifrunner.gnm1.ann1.704TPP Arachis hypogaea HOM05D000344 ORTHO05D005296 1.2e-23 113.6 85 67.1
Lalb_Chr12g0198671 Lupinus albus HOM05D000344 ORTHO05D005296 1.5e-23 113.2 85 67.1
Glyma.17G074200 Glycine max HOM05D000344 ORTHO05D005296 2.0e-23 112.8 84 66.7
arahy.Tifrunner.gnm1.ann1.ALG29P Arachis hypogaea HOM05D000344 ORTHO05D005296 5.9e-23 111.3 85 65.9
Lj4g0022650 Lotus japonicus HOM05D000344 ORTHO05D005296 2.9e-22 109.0 81 64.2
GSVIVG01001910001 Vitis vinifera HOM05D000344 ORTHO05D005296 1.2e-20 103.6 85 58.8
Eucgr.C00353 Eucalyptus grandis HOM05D000344 ORTHO05D005296 7.9e-20 100.9 85 57.6
TAR636G1075 Trochodendron aralioides HOM05D000344 ORTHO05D005296 3.9e-19 98.6 83 60.2
PGR142G4209 Punica granatum HOM05D000344 ORTHO05D005296 5.1e-19 98.2 87 56.3
Cfa021217 Carpinus fangiana HOM05D000344 ORTHO05D005296 1.5e-18 96.7 84 57.1
CiPaw.16G113400 Carya illinoinensis HOM05D000344 ORTHO05D005296 4.3e-18 95.1 84 56.0
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 5.7e-18 94.7 84 56.0
Oeu052192.1 Olea europaea HOM05D000344 ORTHO05D005296 5.7e-18 94.7 85 51.8
MD02G1008300 Malus domestica HOM05D000344 ORTHO05D005296 7.4e-18 94.4 81 55.6
QL02p093136 Quercus lobata HOM05D000344 ORTHO05D005296 9.7e-18 94.0 85 56.5
Actinidia04295 Actinidia chinensis HOM05D000344 ORTHO05D005296 1.7e-17 93.2 85 52.9
MD15G1152500 Malus domestica HOM05D000344 ORTHO05D005296 3.7e-17 92.0 81 53.1
GSVIVG01014079001 Vitis vinifera HOM05D000344 ORTHO05D005296 6.3e-17 91.3 76 55.3
Manes.06G036300 Manihot esculenta HOM05D000344 ORTHO05D005296 8.2e-17 90.9 81 54.3
Hma1.2p1_0222F.1_g093490 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 1.4e-16 90.1 81 55.6
Oeu027650.1 Olea europaea HOM05D000344 ORTHO05D005296 4.1e-16 88.6 83 49.4
Rhsim01G0034200 Rhododendron simsii HOM05D000344 ORTHO05D005296 1.2e-15 87.0 84 51.2
SGA_v2.0_scaffold12G05989 Striga asiatica HOM05D000344 ORTHO05D005296 2.6e-15 85.9 74 56.8
FAN26G2818 Fragaria x ananassa HOM05D000344 ORTHO05D005296 3.4e-15 85.5 85 51.8
Peaxi162Scf00252g00019 Petunia axillaris HOM05D000344 ORTHO05D005296 4.5e-15 85.1 84 51.2
CANSAT11G2628 Cannabis sativa HOM05D000344 ORTHO05D005296 5.9e-15 84.7 84 53.6
FvH4_1g01010 Fragaria vesca HOM05D000344 ORTHO05D005296 7.7e-15 84.3 85 51.8
FAN28G1751 Fragaria x ananassa HOM05D000344 ORTHO05D005296 7.7e-15 84.3 85 51.8
THA.LOC104817823 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 7.7e-15 84.3 83 49.4
FAN23G2562 Fragaria x ananassa HOM05D000344 ORTHO05D005296 1.3e-14 83.6 85 50.6
RcHm_v2.0_Chr2g0085751 Rosa chinensis HOM05D000344 ORTHO05D005296 1.3e-14 83.6 82 51.2
TWI34G1136 Tripterygium wilfordii HOM05D000344 ORTHO05D005296 1.3e-14 83.6 83 50.6
SalBow1G0321 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.2e-14 82.8 85 51.8
SalBow5G5380 Salvia bowleyana HOM05D000344 ORTHO05D005296 2.2e-14 82.8 83 49.4
THA.LOC104811836 Tarenaya hassleriana HOM05D000344 ORTHO05D005296 2.2e-14 82.8 85 51.8
Migut.K00330 Erythranthe guttata HOM05D000344 ORTHO05D005296 3.8e-14 82.0 79 49.4
Nitab4.5_0006879g0010 Nicotiana tabacum HOM05D000344 ORTHO05D005296 3.8e-14 82.0 73 54.8
Nitab4.5_0009049g0030 Nicotiana tabacum HOM05D000344 ORTHO05D005296 3.8e-14 82.0 73 54.8
TAR625G0471 Trochodendron aralioides HOM05D000344 ORTHO05D005296 3.8e-14 82.0 80 55.0
CAN.G160.72 Capsicum annuum HOM05D000344 ORTHO05D005296 1.1e-13 80.5 73 53.4
Hma1.2p1_0028F.1_g017540 Hydrangea macrophylla HOM05D000344 ORTHO05D005296 1.4e-13 80.1 76 52.6
Sopen07g001630 Solanum pennellii HOM05D000344 ORTHO05D005296 1.4e-13 80.1 73 52.1
Solyc07g005530.4 Solanum lycopersicum HOM05D000344 ORTHO05D005296 1.9e-13 79.7 73 52.1
Duzib168G1790 Durio zibethinus HOM05D000344 ORTHO05D005296 2.5e-13 79.3 73 53.4
Prupe.7G262200 Prunus persica HOM05D000344 ORTHO05D005296 2.5e-13 79.3 81 50.6
PGSC0003DMG400011136 Solanum tuberosum HOM05D000344 ORTHO05D005296 2.5e-13 79.3 73 52.1
unitig_8.g3634 Utricularia gibba HOM05D000344 ORTHO05D005296 4.2e-13 78.6 83 47.0
MSTRG.10689 Avicennia marina HOM05D000344 ORTHO05D005296 7.2e-13 77.8 83 45.8
Cc06_g15070 Coffea canephora HOM05D000344 ORTHO05D005296 7.2e-13 77.8 81 49.4
Gohir.A08G251700 Gossypium hirsutum HOM05D000344 ORTHO05D005296 7.2e-13 77.8 71 53.5
Ciclev10007375m.g Citrus clementina HOM05D000344 ORTHO05D005296 9.4e-13 77.4 85 48.2
Actinidia38328 Actinidia chinensis HOM05D000344 ORTHO05D005296 1.6e-12 76.6 72 50.0
ClCG02G014550 Citrullus lanatus HOM05D000344 ORTHO05D005296 2.1e-12 76.3 84 46.4
Thecc.09G031500 Theobroma cacao HOM05D000344 ORTHO05D005296 2.1e-12 76.3 84 47.6
Cc11_g03310 Coffea canephora HOM05D000344 ORTHO05D005296 2.7e-12 75.9 81 46.9
Potri.018G107500 Populus trichocarpa HOM05D000344 ORTHO05D005296 3.6e-12 75.5 84 48.8
Gorai.004G291700 Gossypium raimondii HOM05D000344 ORTHO05D005296 4.7e-12 75.1 71 50.7
AT5G57990 Arabidopsis thaliana HOM05D000344 ORTHO05D005296 7.9e-12 74.3 78 47.4
DCAR_019390 Daucus carota HOM05D000344 ORTHO05D005296 7.9e-12 74.3 84 45.2
Gohir.D08G273300 Gossypium hirsutum HOM05D000344 ORTHO05D005296 1.4e-11 73.6 71 50.7
Atru.chr7.119 Acer truncatum HOM05D000344 ORTHO05D005296 1.8e-11 73.2 84 51.2
AL8G34070 Arabidopsis lyrata HOM05D000344 ORTHO05D005296 1.8e-11 73.2 78 46.2
MELO3C004139.2 Cucumis melo HOM05D000344 ORTHO05D005296 1.8e-11 73.2 84 45.2
Sc17g0006710 Simmondsia chinensis HOM05D000344 ORTHO05D005296 1.8e-11 73.2 78 47.4
Aa31LG3G13780 Aethionema arabicum HOM05D000344 ORTHO05D005296 2.3e-11 72.8 72 51.4
CsaV3_2G007460 Cucumis sativus L. HOM05D000344 ORTHO05D005296 2.3e-11 72.8 84 45.2
DCAR_014812 Daucus carota HOM05D000344 ORTHO05D004969 2.3e-11 72.8 84 44.0
Duzib150G1122 Durio zibethinus HOM05D000344 ORTHO05D005296 2.3e-11 72.8 70 52.9
Duzib187G1763 Durio zibethinus HOM05D000344 ORTHO05D005296 3.0e-11 72.4 70 52.9
Sabra18G0091500 Salix brachista HOM05D000344 ORTHO05D005296 3.0e-11 72.4 84 46.4
CARHR271780 Cardamine hirsuta HOM05D000344 ORTHO05D005296 3.9e-11 72.0 73 47.9
Sed0018237 Sechium edule HOM05D000344 ORTHO05D005296 3.9e-11 72.0 84 46.4
COL.COLO4_18799 Corchorus olitorius HOM05D000344 ORTHO05D005296 5.1e-11 71.6 71 47.9
Os02g0795000 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 6.7e-11 71.2 71 49.3
Os06g0184300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D005296 6.7e-11 71.2 71 47.9
C02p13720 Brassica napus HOM05D000344 ORTHO05D005296 8.8e-11 70.9 83 43.4
BolC2t07490H Brassica oleracea HOM05D000344 ORTHO05D005296 8.8e-11 70.9 83 43.4
BraA02t05880Z Brassica rapa HOM05D000344 ORTHO05D005296 1.1e-10 70.5 83 43.4
Cfa020829 Carpinus fangiana HOM05D000344 ORTHO05D014129 1.5e-10 70.1 59 57.6
Gorai.009G055700 Gossypium raimondii HOM05D000344 ORTHO05D005296 1.5e-10 70.1 70 51.4
Ah.08g212460 Amaranthus hybridus HOM05D000344 ORTHO05D005296 2.6e-10 69.3 82 43.9
Thhalv10012558m.g Eutrema salsugineum HOM05D000344 ORTHO05D005296 3.3e-10 68.9 72 47.2
Aqoxy1G03315 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 4.4e-10 68.6 81 53.1
Zm00001eb374670 Zea mays HOM05D000344 ORTHO05D005296 4.4e-10 68.6 71 47.9
Aqoxy7G03425 Aquilegia oxysepala HOM05D000344 ORTHO05D005296 5.7e-10 68.2 85 45.9
CDE02G1206 Ceratophyllum demersum HOM05D000344 ORTHO05D005296 5.7e-10 68.2 82 45.1
Gohir.A05G052400 Gossypium hirsutum HOM05D000344 ORTHO05D005296 5.7e-10 68.2 71 52.1
BcaB01g04469 Brassica carinata HOM05D000344 ORTHO05D005296 7.4e-10 67.8 87 42.5
Sabra06G0140700 Salix brachista HOM05D000344 ORTHO05D005296 1.7e-09 66.6 81 46.9
Sp6g19650 Schrenkiella parvula HOM05D000344 ORTHO05D005296 1.7e-09 66.6 73 45.2
A03p12460 Brassica napus HOM05D000344 ORTHO05D005296 2.8e-09 65.9 83 42.2
C03p14670 Brassica napus HOM05D000344 ORTHO05D005296 2.8e-09 65.9 83 42.2
C09p49800 Brassica napus HOM05D000344 ORTHO05D005296 2.8e-09 65.9 72 45.8
BolC3t13908H Brassica oleracea HOM05D000344 ORTHO05D005296 2.8e-09 65.9 83 42.2
BolC9t57831H Brassica oleracea HOM05D000344 ORTHO05D005296 2.8e-09 65.9 72 47.2
BraA03t10561Z Brassica rapa HOM05D000344 ORTHO05D005296 2.8e-09 65.9 83 42.2
AUR62008577 Chenopodium quinoa HOM05D000344 ORTHO05D005296 2.8e-09 65.9 66 48.5
Potri.006G185200 Populus trichocarpa HOM05D000344 ORTHO05D005296 2.8e-09 65.9 84 44.0
AUR62034662 Chenopodium quinoa HOM05D000344 ORTHO05D005296 4.8e-09 65.1 66 48.5
Nn2g12347 Nelumbo nucifera HOM05D000344 ORTHO05D005296 4.8e-09 65.1 70 52.9
Gohir.D05G053900 Gossypium hirsutum HOM05D000344 ORTHO05D005296 8.2e-09 64.3 60 53.3
A10p16190 Brassica napus HOM05D000344 ORTHO05D005296 1.4e-08 63.5 76 44.7
BraA10t43610Z Brassica rapa HOM05D000344 ORTHO05D005296 1.4e-08 63.5 76 44.7
HPP92_010393 Vanilla planifolia HOM05D000344 ORTHO05D014129 1.4e-08 63.5 79 46.8
PSO675G3655 Papaver somniferum HOM05D000344 ORTHO05D005296 4.1e-08 62.0 85 41.2
ECA234G2365 Erigeron canadensis HOM05D000344 ORTHO05D004969 5.3e-08 61.6 73 41.1
HanXRQChr10g0313751 Helianthus annuus HOM05D000344 ORTHO05D005296 5.3e-08 61.6 85 40.0
Lsat_1_v5_gn_5_91020 Lactuca sativa HOM05D000344 ORTHO05D005296 1.5e-07 60.1 67 47.8
SHI02820 Sapria himalayana HOM05D000344 ORTHO05D005296 1.5e-07 60.1 63 46.0
ATR0739G085 Amborella trichopoda HOM05D000344 ORTHO05D005296 3.4e-07 58.9 75 42.7
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 7.7e-07 57.8 61 47.5
CSS0016122 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D014129 2.9e-06 55.8 38 63.2
Carub.0008s1852 Capsella rubella HOM05D000344 ORTHO05D005296 2.9e-06 55.8 78 39.7
A02p08070 Brassica napus HOM05D000344 ORTHO05D005296 3.8e-06 55.5 84 40.5
CSS0027545 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D043344 3.8e-06 55.5 49 51.0


User provided reference genes

Program Settings