Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 6.6e-177 624.0 336 100.0
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 6.1e-98 361.7 352 63.4
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.9e-94 350.1 346 63.9
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 5.0e-92 342.0 351 61.5
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.6e-90 337.0 340 61.5
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 4.7e-90 335.5 344 59.9
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.3e-89 333.2 380 56.3
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.7e-84 317.0 342 59.4
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 7.3e-83 311.6 340 55.6
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 7.3e-83 311.6 341 57.2
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.6e-82 310.5 342 55.0
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 5.2e-81 305.4 350 56.9
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.5e-80 303.9 341 56.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 2.6e-80 303.1 336 54.5
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 4.4e-80 302.4 343 57.1
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 7.5e-80 301.6 339 57.2
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 4.1e-78 295.8 335 56.1
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 2.1e-77 293.5 343 56.0
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.7e-77 293.1 336 52.7
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 4.6e-77 292.4 345 54.2
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.0e-77 292.0 344 52.9
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.3e-76 290.0 343 54.5
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 3.3e-75 286.2 345 52.5
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 3.3e-75 286.2 345 52.8
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 3.3e-75 286.2 338 53.3
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 3.3e-75 286.2 338 53.3
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.6e-75 285.4 345 52.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-74 283.9 339 51.9
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 1.6e-74 283.9 339 51.9
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 1.6e-74 283.9 338 53.0
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.1e-74 283.5 325 55.4
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.1e-74 283.5 345 53.0
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.1e-73 281.2 342 55.8
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.4e-73 280.8 340 51.8
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 2.4e-73 280.0 324 56.2
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 6.8e-73 278.5 339 51.9
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.0e-72 276.9 353 51.0
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 4.4e-72 275.8 344 52.3
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 5.8e-72 275.4 340 52.1
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 1.3e-71 274.2 323 55.4
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.7e-71 273.9 344 52.0
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 2.2e-71 273.5 333 49.5
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 6.4e-71 271.9 338 50.0
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 6.4e-71 271.9 330 51.8
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 8.4e-71 271.6 345 51.0
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 8.4e-71 271.6 345 51.0
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 1.4e-70 270.8 344 50.9
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.9e-70 270.4 329 51.4
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.9e-70 270.4 334 52.1
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 5.4e-70 268.9 334 50.6
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 9.2e-70 268.1 338 50.0
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.6e-69 267.3 345 50.4
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 7.8e-69 265.0 342 49.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.3e-68 264.2 342 50.3
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 1.7e-68 263.8 318 54.4
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.7e-68 263.8 323 53.6
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 2.3e-68 263.5 344 51.7
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.9e-68 262.7 341 49.3
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 5.1e-68 262.3 341 51.0
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.1e-67 261.2 341 50.7
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.9e-67 260.4 340 51.2
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 1.9e-67 260.4 327 50.2
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.5e-67 260.0 351 47.9
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 5.6e-67 258.8 337 49.3
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.6e-66 257.3 342 50.9
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.6e-66 257.3 342 50.9
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 2.1e-66 256.9 343 49.3
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 2.8e-66 256.5 336 50.0
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 3.6e-66 256.1 342 49.4
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 3.6e-66 256.1 342 49.4
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.6e-66 256.1 341 48.1
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 4.8e-66 255.8 340 49.7
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 4.8e-66 255.8 340 49.7
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 4.8e-66 255.8 354 48.0
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 4.8e-66 255.8 304 54.6
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 1.1e-65 254.6 345 49.3
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 1.8e-65 253.8 338 48.8
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 5.3e-65 252.3 326 49.1
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 1.5e-64 250.8 346 48.8
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 5.8e-64 248.8 324 50.3
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 1.7e-63 247.3 336 49.1
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.4e-62 243.4 374 46.3
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 4.2e-62 242.7 340 47.6
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 1.2e-61 241.1 337 49.3
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 2.1e-61 240.4 332 48.5
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 3.3e-59 233.0 321 49.2
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.3e-59 232.6 347 45.8
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 9.6e-59 231.5 327 45.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 4.8e-58 229.2 320 46.9
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.1e-57 228.0 338 46.7
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.8e-57 227.3 330 44.5
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 7.6e-56 221.9 350 47.4
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.9e-55 219.9 326 43.9
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 6.4e-55 218.8 353 42.2
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 5.4e-54 215.7 351 42.2
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 7.1e-54 215.3 337 41.8
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 9.3e-54 214.9 350 41.4
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.3e-52 210.3 271 49.1
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 6.7e-52 208.8 335 41.8
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 7.4e-51 205.3 327 42.5
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 9.6e-51 204.9 339 44.0
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 2.1e-50 203.8 347 40.9
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.1e-50 203.8 331 43.8
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 2.1e-50 203.8 326 42.6
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.2e-50 202.2 335 42.4
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.8e-49 200.7 335 40.6
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.2e-48 198.0 289 47.4
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.5e-48 197.6 328 42.4
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 7.6e-48 195.3 337 41.2
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 1.7e-47 194.1 329 41.3
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.1e-46 191.4 335 41.2
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.4e-46 191.0 322 40.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 3.2e-46 189.9 326 42.3
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 2.5e-43 180.3 348 37.6
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 3.3e-43 179.9 310 45.2
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.3e-42 177.9 314 44.6
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 1.6e-42 177.6 262 46.6
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 8.2e-42 175.3 329 39.2
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 9.0e-41 171.8 354 39.8
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.5e-38 163.7 303 41.3
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 3.0e-36 156.8 371 35.8
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 3.9e-36 156.4 336 37.8
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.5e-35 154.5 211 49.3
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 7.4e-35 152.1 337 37.1
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 6.3e-34 149.1 316 36.4
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.8e-33 147.5 342 37.7
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.8e-28 131.0 123 64.2
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 3.9e-28 129.8 167 46.1
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 5.1e-28 129.4 279 39.4
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.5e-27 127.9 171 48.5
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 4.3e-27 126.3 354 32.8
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.8e-26 123.6 180 46.1
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 4.8e-26 122.9 155 55.5
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 6.3e-26 122.5 324 31.8
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 1.2e-24 118.2 313 32.9
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.0e-20 105.1 420 28.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.5e-19 101.3 104 55.8
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 3.3e-19 100.1 243 35.8
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.4e-17 94.7 189 38.1
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 1.0e-15 88.6 172 36.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.5e-14 84.7 100 48.0
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 3.6e-13 80.1 64 57.8
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 1.4e-12 78.2 320 28.4
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 7.4e-11 72.4 52 75.0
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.1e-09 66.6 87 43.7
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.2e-08 65.1 131 40.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.2e-08 65.1 159 34.0
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 9.4e-06 55.5 86 39.5


User provided reference genes

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