Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 6.1e-127 457.6 249 100.0
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 1.6e-87 326.6 225 77.3
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 5.8e-85 318.2 222 76.6
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 2.5e-80 302.8 221 71.5
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 9.5e-80 300.8 223 74.0
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 9.5e-80 300.8 224 70.1
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 4.9e-76 288.5 216 69.4
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 7.1e-75 284.6 216 68.5
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 6.0e-74 281.6 217 67.7
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.9e-72 276.6 229 64.2
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 1.6e-71 273.5 221 64.3
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 2.1e-71 273.1 230 62.6
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 4.7e-71 271.9 230 62.2
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 6.9e-70 268.1 229 61.6
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.4e-67 260.4 237 59.5
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 2.4e-67 259.6 223 63.2
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 5.4e-67 258.5 245 56.7
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 7.1e-67 258.1 222 61.3
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 3.5e-66 255.8 230 59.1
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 6.0e-66 255.0 237 58.6
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.3e-65 253.8 237 56.5
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 2.3e-65 253.1 230 58.3
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 3.9e-65 252.3 237 57.8
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 1.5e-64 250.4 233 57.5
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 3.3e-64 249.2 233 59.7
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 7.3e-64 248.1 231 57.1
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 2.1e-63 246.5 228 59.2
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 2.1e-63 246.5 240 56.7
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 4.8e-63 245.4 226 57.5
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 6.2e-63 245.0 228 56.6
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 8.1e-63 244.6 224 58.0
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 1.1e-62 244.2 240 56.2
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 2.4e-62 243.0 226 57.1
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 3.1e-62 242.7 223 59.6
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 5.3e-62 241.9 238 55.9
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 2.0e-61 240.0 234 59.0
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 2.0e-61 240.0 233 54.9
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 3.4e-61 239.2 233 57.5
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 7.6e-61 238.0 228 55.3
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.7e-60 236.9 235 54.9
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 2.2e-60 236.5 226 55.3
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 2.9e-60 236.1 235 54.9
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 3.8e-60 235.7 231 54.5
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.4e-60 235.0 233 52.4
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.4e-59 233.8 224 55.4
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 1.9e-59 233.4 237 53.2
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 3.2e-59 232.6 229 52.4
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 4.2e-59 232.3 237 53.2
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 4.2e-59 232.3 226 54.4
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 7.1e-59 231.5 254 51.2
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 9.3e-59 231.1 239 51.9
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 9.3e-59 231.1 224 55.4
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.2e-58 230.7 233 54.5
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.6e-58 230.3 243 53.5
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 2.1e-58 229.9 231 53.7
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 2.7e-58 229.6 223 53.8
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 3.9e-57 225.7 239 51.0
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 5.1e-57 225.3 236 51.7
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.1e-57 225.3 239 51.0
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 6.7e-57 224.9 232 50.9
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 3.3e-56 222.6 241 53.1
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 5.6e-56 221.9 241 50.2
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 7.4e-56 221.5 245 49.0
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 7.4e-56 221.5 234 50.4
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 7.4e-56 221.5 233 51.9
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 7.4e-56 221.5 240 50.4
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 7.4e-56 221.5 236 50.8
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 1.3e-55 220.7 228 53.5
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 2.1e-55 219.9 244 48.8
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.8e-55 219.5 240 50.0
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-55 219.5 244 48.8
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 2.8e-55 219.5 241 49.0
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 4.8e-55 218.8 240 49.6
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 6.2e-55 218.4 244 48.4
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 6.2e-55 218.4 251 48.2
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 8.1e-55 218.0 243 49.0
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 1.8e-54 216.9 343 40.2
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.2e-53 214.2 233 54.5
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 1.5e-53 213.8 247 47.8
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 2.6e-53 213.0 252 47.2
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 4.5e-53 212.2 252 46.8
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 5.8e-53 211.8 254 49.6
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.6e-53 211.5 231 51.1
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 7.6e-53 211.5 231 51.1
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 9.9e-53 211.1 231 51.1
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 5.5e-51 205.3 232 48.3
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 6.0e-50 201.8 256 45.3
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.0e-49 201.1 226 50.4
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 5.1e-49 198.7 221 53.8
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 6.7e-49 198.4 237 48.5
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 1.5e-48 197.2 250 45.6
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 1.3e-47 194.1 223 48.9
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 1.1e-46 191.0 227 48.5
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 5.8e-45 185.3 195 51.8
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.7e-44 183.7 189 52.4
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 4.9e-44 182.2 242 43.0
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-43 178.7 223 43.5
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 5.5e-43 178.7 223 43.5
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 1.5e-40 170.6 224 42.9
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.5e-40 170.6 234 42.7
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 4.3e-40 169.1 223 43.0
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 6.3e-39 165.2 214 42.1
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 4.1e-38 162.5 204 43.1
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 9.0e-38 161.4 212 47.6
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 2.6e-37 159.8 225 41.8
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 2.6e-37 159.8 225 41.8
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 4.5e-37 159.1 244 39.3
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 2.2e-36 156.8 145 52.4
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 3.2e-35 152.9 145 51.7
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 3.2e-35 152.9 145 51.7
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 5.1e-33 145.6 145 51.7
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 1.3e-28 131.0 224 39.7
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 5.0e-28 129.0 206 33.5
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 1.0e-25 121.3 232 34.1
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.3e-25 120.2 138 49.3
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 2.4e-22 110.2 133 50.4
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 2.4e-22 110.2 210 35.7
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 1.2e-21 107.8 125 51.2
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 3.4e-21 106.3 237 31.2
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 5.9e-21 105.5 86 58.1
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 5.7e-16 89.0 128 41.4
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 9.1e-14 81.6 125 38.4
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 3.5e-13 79.7 138 36.2
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 3.5e-13 79.7 108 43.5
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.9e-12 76.6 52 65.4
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.2e-11 72.8 57 63.2
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 2.7e-10 70.1 192 29.2
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 8.0e-10 68.6 36 88.9
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 4.0e-09 66.2 102 39.2
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 4.0e-09 66.2 102 39.2
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 8.8e-09 65.1 126 33.3
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 2.0e-08 63.9 102 38.2
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 2.0e-08 63.9 102 38.2
CBR_g39602 Chara braunii HOM05D005295 ORTHO05D005962 5.7e-08 62.4 276 24.3
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 7.5e-08 62.0 102 37.3
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.4e-06 57.8 35 71.4
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.4e-06 57.8 35 71.4
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.4e-06 57.8 35 71.4
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.4e-06 57.8 35 71.4
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.4e-06 57.8 35 71.4
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 1.8e-06 57.4 173 27.7
AagrBONN_evm.TU.Sc2ySwM_117.1842 Anthoceros agrestis HOM05D005295 ORTHO05D005962 2.4e-06 57.0 138 31.2
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.1e-06 56.2 35 68.6


User provided reference genes

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