Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 6.8e-108 394.0 203 100.0
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 2.8e-98 362.1 203 91.6
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 2.2e-90 335.9 203 84.2
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 2.3e-87 325.9 204 82.8
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 6.1e-85 317.8 183 90.7
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.4e-76 290.0 181 83.4
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 1.4e-76 290.0 181 83.4
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.5e-75 286.6 187 82.9
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 4.9e-74 281.6 205 75.1
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 2.1e-69 266.2 184 76.6
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 8.9e-68 260.8 187 77.0
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 8.9e-68 260.8 187 77.0
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 2.6e-67 259.2 214 66.4
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 5.8e-67 258.1 186 71.5
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 2.2e-66 256.1 205 67.8
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.9e-66 255.0 188 70.7
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 8.4e-66 254.2 194 70.6
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 5.4e-65 251.5 210 64.3
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 1.2e-64 250.4 189 72.0
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 7.8e-64 247.7 185 71.4
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 2.5e-62 242.7 195 66.2
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 4.3e-62 241.9 192 68.2
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 2.8e-61 239.2 195 65.1
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 4.7e-61 238.4 238 58.4
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 6.2e-61 238.0 238 58.4
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 8.1e-61 237.7 213 62.9
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 1.1e-60 237.3 185 68.6
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 1.1e-60 237.3 214 59.8
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.4e-60 236.9 194 69.6
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 1.8e-60 236.5 238 58.0
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 1.2e-59 233.8 193 66.3
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.6e-59 232.6 193 66.3
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 1.3e-58 230.3 191 67.0
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 2.2e-58 229.6 193 67.9
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 2.2e-58 229.6 193 67.9
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 3.8e-58 228.8 196 63.8
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 3.8e-58 228.8 194 65.5
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.4e-58 228.0 191 64.4
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.4e-57 226.9 195 67.2
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.9e-57 226.5 191 66.0
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 2.4e-57 226.1 223 55.6
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 7.1e-57 224.6 215 57.7
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.6e-56 223.4 204 63.7
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 1.6e-56 223.4 215 56.7
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.6e-56 223.4 189 66.7
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 2.1e-56 223.0 190 63.2
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 2.7e-56 222.6 190 63.7
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 2.3e-55 219.5 214 56.1
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 8.7e-55 217.6 191 62.8
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 1.1e-54 217.2 216 55.6
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 3.3e-54 215.7 195 62.1
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 7.3e-54 214.5 189 63.5
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.6e-53 213.4 193 64.8
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 2.8e-53 212.6 216 55.1
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 3.6e-53 212.2 217 53.9
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 3.6e-53 212.2 217 53.9
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 3.6e-53 212.2 217 53.9
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 6.2e-53 211.5 193 64.2
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 8.1e-53 211.1 199 59.8
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 1.4e-52 210.3 214 53.7
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 2.4e-52 209.5 216 54.6
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 6.9e-52 208.0 212 58.0
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 1.2e-51 207.2 189 63.5
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 1.2e-51 207.2 189 63.5
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 1.2e-51 207.2 189 63.5
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 1.5e-51 206.8 193 64.2
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.5e-51 206.8 193 64.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.0e-51 206.5 216 54.2
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 2.6e-51 206.1 181 61.3
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 5.8e-51 204.9 243 52.3
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.7e-50 203.4 214 52.3
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 3.8e-50 202.2 192 59.9
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.9e-50 201.8 220 53.6
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.9e-50 201.8 191 63.4
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 8.4e-50 201.1 191 63.9
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.4e-49 200.3 191 63.9
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 1.9e-49 199.9 242 48.8
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 4.2e-49 198.7 183 58.5
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 9.3e-49 197.6 197 56.3
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 9.3e-49 197.6 192 59.4
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 3.5e-48 195.7 242 48.3
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 3.5e-48 195.7 186 58.1
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 4.6e-48 195.3 192 58.3
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 4.6e-48 195.3 200 58.5
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 6.6e-47 191.4 201 54.7
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 1.9e-46 189.9 187 61.5
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 2.5e-46 189.5 196 58.7
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 7.3e-46 188.0 212 51.9
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 1.3e-45 187.2 119 77.3
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.6e-45 186.8 199 54.3
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 2.8e-45 186.0 184 57.1
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 4.8e-45 185.3 189 57.1
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 6.2e-45 184.9 189 58.2
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 6.2e-45 184.9 189 58.7
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 6.2e-45 184.9 189 58.7
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 1.1e-44 184.1 194 57.7
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 1.1e-44 184.1 198 56.6
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 9.0e-44 181.0 181 55.2
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 2.0e-43 179.9 180 56.1
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 3.4e-43 179.1 194 56.7
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 2.2e-42 176.4 277 43.3
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.4e-42 174.9 157 61.1
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 6.4e-42 174.9 158 62.0
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 1.6e-40 170.2 181 54.7
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 2.1e-40 169.9 183 55.2
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 2.1e-40 169.9 186 54.8
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 2.7e-40 169.5 185 54.6
TPR.G16752 Trifolium pratense HOM05D003496 ORTHO05D003909 3.0e-39 166.0 116 81.0
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 1.5e-38 163.7 261 41.8
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 1.9e-38 163.3 176 52.8
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 5.6e-38 161.8 250 43.2
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 9.6e-38 161.0 194 50.0
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 4.8e-37 158.7 233 44.2
Potri.002G096400 Populus trichocarpa HOM05D003496 ORTHO05D003909 8.1e-37 157.9 171 56.1
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 3.1e-36 156.0 171 53.2
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 6.9e-36 154.8 103 80.6
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 5.8e-35 151.8 184 52.7
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 1.3e-34 150.6 187 50.3
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 8.4e-34 147.9 155 56.1
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 8.4e-34 147.9 167 53.3
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 5.5e-33 145.2 158 55.1
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 2.7e-32 142.9 166 52.4
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 1.9e-30 136.7 155 51.6
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.4e-28 130.6 209 42.6
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 4.1e-28 129.0 119 58.0
VMungo0647G2290 Vigna mungo HOM05D003496 ORTHO05D003909 3.5e-24 115.9 62 96.8
Sc23g0000220 Simmondsia chinensis HOM05D003496 ORTHO05D003909 4.6e-24 115.5 105 58.1
Glyma.14G121700 Glycine max HOM05D003496 ORTHO05D003909 1.0e-23 114.4 62 95.2
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 2.3e-23 113.2 118 56.8
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 1.9e-22 110.2 68 83.8
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 2.4e-20 103.2 203 36.0
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 1.0e-18 97.8 163 40.5
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 1.9e-17 93.6 119 45.4
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 3.2e-17 92.8 110 50.9
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 1.6e-16 90.5 72 70.8
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 9.7e-14 81.3 74 62.2
CARHR022660 Cardamine hirsuta HOM05D003496 ORTHO05D003909 1.4e-12 77.4 69 60.9
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 3.1e-12 76.3 72 56.9
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 3.1e-12 76.3 55 70.9
TPR.G33088 Trifolium pratense HOM05D003496 ORTHO05D003909 3.1e-12 76.3 38 89.5
SHI03711 Sapria himalayana HOM05D003496 ORTHO05D003909 3.4e-11 72.8 45 82.2
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.2e-09 65.9 86 50.0
FvH4_5g37876 Fragaria vesca HOM05D003496 ORTHO05D003909 1.2e-08 64.3 86 48.8
SEGI_01702 Sequoiadendron giganteum HOM05D003496 ORTHO05D003909 1.6e-08 63.9 91 44.0
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 3.6e-08 62.8 69 55.1
Glyma.02G069400 Glycine max HOM05D000487 ORTHO05D000405 4.7e-08 62.4 41 75.6
Glyma.13G224300 Glycine max HOM05D000487 ORTHO05D000405 4.7e-08 62.4 41 75.6


User provided reference genes

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