Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 3.9e-82 308.1 162 100.0
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 4.8e-64 248.1 162 78.4
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 4.5e-46 188.3 171 66.1
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.1e-41 173.7 162 63.6
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 2.8e-40 169.1 162 56.8
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 2.8e-40 169.1 162 56.8
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 6.3e-40 167.9 154 57.1
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 2.4e-39 166.0 162 54.9
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 4.1e-39 165.2 158 57.6
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 5.3e-39 164.9 166 52.4
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 5.9e-38 161.4 164 56.1
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.2e-37 159.5 163 54.6
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 2.2e-37 159.5 163 54.6
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 5.0e-37 158.3 166 54.8
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 4.2e-36 155.2 161 52.8
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 5.5e-36 154.8 162 53.7
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 7.2e-36 154.5 162 53.7
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 9.4e-36 154.1 162 52.5
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 2.1e-35 152.9 164 54.3
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 2.7e-35 152.5 163 51.5
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 4.7e-35 151.8 168 52.4
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 1.0e-34 150.6 162 50.6
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.0e-34 150.6 157 53.5
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 1.0e-34 150.6 162 50.6
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 1.0e-34 150.6 150 53.3
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.4e-34 150.2 157 52.2
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 2.3e-34 149.4 162 48.8
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 3.0e-34 149.1 162 48.8
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 5.1e-34 148.3 159 50.3
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 5.1e-34 148.3 162 48.8
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 5.1e-34 148.3 164 47.6
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 6.7e-34 147.9 162 48.1
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 8.8e-34 147.5 164 48.8
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 8.8e-34 147.5 162 47.5
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.1e-33 147.1 157 53.5
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 2.0e-33 146.4 163 47.9
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 2.0e-33 146.4 163 50.9
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 2.6e-33 146.0 156 49.4
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 2.6e-33 146.0 162 50.0
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 2.6e-33 146.0 162 52.5
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 3.3e-33 145.6 162 49.4
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.3e-33 145.6 157 52.9
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 3.3e-33 145.6 157 49.7
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 3.3e-33 145.6 174 54.6
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 5.7e-33 144.8 157 53.5
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 5.7e-33 144.8 162 47.5
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 7.4e-33 144.4 164 47.0
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 4.8e-32 141.7 162 48.1
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 6.3e-32 141.4 164 45.7
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 1.8e-31 139.8 169 45.6
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.4e-31 139.4 162 48.1
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 4.1e-31 138.7 164 47.6
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 5.3e-31 138.3 159 50.9
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 5.3e-31 138.3 162 47.5
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 7.0e-31 137.9 172 51.2
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 1.6e-30 136.7 162 46.3
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 1.6e-30 136.7 164 48.2
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 2.0e-30 136.3 168 45.8
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 2.0e-30 136.3 167 46.7
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 2.0e-30 136.3 162 43.2
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 2.0e-30 136.3 163 46.0
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 2.6e-30 136.0 162 43.8
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 4.5e-30 135.2 163 47.9
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 4.5e-30 135.2 162 46.9
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 5.9e-30 134.8 167 46.7
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 7.7e-30 134.4 163 49.7
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 1.7e-29 133.3 167 46.1
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 2.9e-29 132.5 167 46.1
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.9e-29 132.5 165 46.1
Peaxi162Scf00460g00412 Petunia axillaris HOM05D004587 ORTHO05D005512 3.8e-29 132.1 160 46.2
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 5.0e-29 131.7 200 42.0
Glyma.11G042700 Glycine max HOM05D004587 ORTHO05D005512 8.5e-29 131.0 159 47.8
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.5e-28 130.2 167 45.5
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.9e-28 129.8 159 44.7
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 3.2e-28 129.0 174 47.1
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 4.2e-28 128.6 163 43.6
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 4.2e-28 128.6 162 45.1
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.2e-28 128.6 164 45.1
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 5.5e-28 128.3 163 44.8
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 7.2e-28 127.9 162 45.7
Lj2C242G4 Lonicera japonica HOM05D004587 ORTHO05D005512 1.2e-27 127.1 118 54.2
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 1.2e-27 127.1 162 45.1
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 1.6e-27 126.7 163 45.4
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 2.1e-27 126.3 162 45.7
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 2.1e-27 126.3 164 42.7
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 3.6e-27 125.6 163 45.4
CAN.G201.22 Capsicum annuum HOM05D004587 ORTHO05D005512 4.7e-27 125.2 162 44.4
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 4.7e-27 125.2 162 45.1
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 8.0e-27 124.4 165 41.8
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.0e-26 124.0 162 45.1
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 1.8e-26 123.2 164 43.3
Migut.C00969 Erythranthe guttata HOM05D004587 ORTHO05D005512 2.3e-26 122.9 166 45.2
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 2.3e-26 122.9 224 39.7
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 5.2e-26 121.7 122 53.3
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 6.7e-26 121.3 165 44.8
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.1e-25 120.6 165 44.2
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.1e-25 120.6 193 40.4
ECA233G1850 Erigeron canadensis HOM05D004587 ORTHO05D005512 3.3e-25 119.0 112 54.5
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 3.3e-25 119.0 268 32.5
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 4.4e-25 118.6 162 50.0
MSTRG.1101 Avicennia marina HOM05D004587 ORTHO05D005512 9.7e-25 117.5 163 41.1
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 1.7e-24 116.7 163 46.0
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.8e-24 115.9 164 42.1
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 2.8e-24 115.9 248 36.7
Aqoxy3G02401 Aquilegia oxysepala HOM05D004587 ORTHO05D005512 6.3e-24 114.8 114 52.6
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 6.3e-24 114.8 142 46.5
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.4e-23 113.6 168 41.1
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.8e-23 113.2 204 37.7
Ah.12g054920 Amaranthus hybridus HOM05D004587 ORTHO05D005512 2.4e-23 112.8 164 51.8
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 3.1e-23 112.5 158 40.5
MSTRG.25306 Avicennia marina HOM05D004587 ORTHO05D005512 4.1e-23 112.1 160 41.2
Zm00001eb208820 Zea mays HOM05D004587 ORTHO05D005512 4.1e-23 112.1 172 40.7
unitig_747.g21515 Utricularia gibba HOM05D006546 ORTHO05D008362 5.9e-22 108.2 111 50.5
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 5.0e-21 105.1 162 37.7
HPP92_001567 Vanilla planifolia HOM05D004587 ORTHO05D005512 5.0e-21 105.1 162 39.5
HPP92_001722 Vanilla planifolia HOM05D004587 ORTHO05D005512 5.0e-21 105.1 162 39.5
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.2e-20 102.1 223 36.8
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 7.2e-20 101.3 161 39.8
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.2e-19 100.5 162 40.1
ATR0049G023 Amborella trichopoda HOM05D004587 ORTHO05D005512 1.6e-19 100.1 164 39.6
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.6e-19 100.1 152 39.5
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.6e-19 100.1 161 37.3
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.1e-19 99.8 110 49.1
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.7e-19 99.4 161 38.5
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 4.7e-19 98.6 160 38.1
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 1.4e-18 97.1 161 37.3
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 1.4e-18 97.1 161 37.3
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-18 96.7 160 37.5
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 2.3e-18 96.3 160 37.5
Os02g0128100 Oryza sativa ssp. japonica HOM05D004587 ORTHO05D005512 5.2e-18 95.1 173 41.6
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.5e-17 93.6 110 45.5
Ciclev10033624m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.6e-17 92.8 82 54.9
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 3.4e-17 92.4 153 38.6
CDE12G0528 Ceratophyllum demersum HOM05D004587 ORTHO05D005512 4.4e-17 92.0 163 36.2
AT5G46620 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 9.8e-17 90.9 110 45.5
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-16 90.1 160 36.9
Zm00001eb231030 Zea mays HOM05D004587 ORTHO05D005512 2.2e-16 89.7 171 35.1
CAN.G1659.7 Capsicum annuum HOM05D004587 ORTHO05D005512 3.7e-16 89.0 81 50.6
HPP92_001583 Vanilla planifolia HOM05D004587 ORTHO05D005512 4.8e-16 88.6 180 34.4
Nitab4.5_0001276g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 6.3e-16 88.2 82 51.2
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.1e-15 87.4 156 37.2
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 1.8e-15 86.7 161 36.6
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 1.8e-15 86.7 161 36.6
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 2.0e-14 83.2 88 52.3
Mapoly0066s0035 Marchantia polymorpha HOM05D004587 ORTHO05D005512 2.7e-14 82.8 152 37.5
AL7G30750 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.5e-14 82.0 80 50.0
Cpa.g.sc90.47 Carica papaya HOM05D004587 ORTHO05D005512 7.7e-14 81.3 75 54.7
Pp3c10_13670 Physcomitrium patens HOM05D004587 ORTHO05D005512 1.8e-10 70.1 97 44.3
Haze_08256 Corylus avellana HOM05D004587 ORTHO05D005512 2.3e-10 69.7 78 46.2
SEGI_38344 Sequoiadendron giganteum HOM05D004587 ORTHO05D005512 1.5e-09 67.0 79 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3589 Anthoceros agrestis HOM05D004587 ORTHO05D005512 1.3e-08 63.9 108 37.0
Pp3c4_4690 Physcomitrium patens HOM05D004587 ORTHO05D005512 3.7e-08 62.4 153 32.0
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 3.1e-07 59.3 88 51.1
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 3.5e-06 55.8 35 68.6
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 3.5e-06 55.8 82 39.0
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 3.5e-06 55.8 82 35.4


User provided reference genes

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