Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7824 Trifolium pratense HOM05D006772 ORTHO05D008367 2.3e-61 238.8 126 100.0
Medtr5g014370 Medicago truncatula HOM05D006772 ORTHO05D008367 8.3e-48 193.7 129 79.8
Psat2g173920 Pisum sativum HOM05D006772 ORTHO05D008367 1.9e-44 182.6 131 76.3
Ca_24649_v3 Cicer arietinum L. HOM05D006772 ORTHO05D008367 4.7e-43 177.9 127 75.6
Lj2g0019736 Lotus japonicus HOM05D006772 ORTHO05D008367 1.5e-41 172.9 131 67.2
arahy.Tifrunner.gnm1.ann1.6N9PAN Arachis hypogaea HOM05D006772 ORTHO05D008367 2.1e-38 162.5 125 69.6
arahy.Tifrunner.gnm1.ann1.WNGN5W Arachis hypogaea HOM05D006772 ORTHO05D008367 2.1e-38 162.5 125 69.6
VMungo1215G2403 Vigna mungo HOM05D006772 ORTHO05D008367 1.3e-37 159.8 128 67.2
Lalb_Chr05g0213971 Lupinus albus HOM05D006772 ORTHO05D008367 6.6e-37 157.5 126 68.3
Glyma.11G043000 Glycine max HOM05D006772 ORTHO05D008367 1.9e-36 156.0 127 66.9
Phvul.002G006800 Phaseolus vulgaris HOM05D006772 ORTHO05D008367 7.3e-36 154.1 128 66.4
Lalb_Chr16g0379141 Lupinus albus HOM05D006772 ORTHO05D008367 2.3e-34 149.1 129 63.6
QL12p005804 Quercus lobata HOM05D006772 ORTHO05D008367 1.2e-33 146.7 126 59.5
QL12p005837 Quercus lobata HOM05D006772 ORTHO05D008367 1.2e-33 146.7 126 59.5
COL.COLO4_17058 Corchorus olitorius HOM05D006772 ORTHO05D008367 4.4e-33 144.8 124 60.5
Thecc.03G229400 Theobroma cacao HOM05D006772 ORTHO05D008367 1.3e-32 143.3 124 60.5
Duzib205G2036 Durio zibethinus HOM05D006772 ORTHO05D008367 2.2e-32 142.5 126 61.9
Glyma.05G111700 Glycine max HOM05D006772 ORTHO05D008367 1.1e-31 140.2 129 58.9
Glyma.17G155300 Glycine max HOM05D006772 ORTHO05D008367 5.4e-31 137.9 134 58.2
Aqoxy3G02398 Aquilegia oxysepala HOM05D006772 ORTHO05D008367 7.1e-31 137.5 124 55.6
Sabra03G0061100 Salix brachista HOM05D006772 ORTHO05D008367 7.1e-31 137.5 126 60.3
Potri.003G091400 Populus trichocarpa HOM05D006772 ORTHO05D008367 4.6e-30 134.8 126 58.7
Nn1g00537 Nelumbo nucifera HOM05D006772 ORTHO05D008367 6.0e-30 134.4 125 56.8
Potri.001G142700 Populus trichocarpa HOM05D006772 ORTHO05D008367 7.8e-30 134.0 127 58.3
Cc08_g02570 Coffea canephora HOM05D006772 ORTHO05D008367 1.0e-29 133.7 124 54.0
Peaxi162Scf00460g00052 Petunia axillaris HOM05D006772 ORTHO05D008367 1.0e-29 133.7 124 54.8
TAR375G0733 Trochodendron aralioides HOM05D006772 ORTHO05D008367 1.0e-29 133.7 124 56.5
MD16G1275100 Malus domestica HOM05D006772 ORTHO05D008367 1.7e-29 132.9 127 53.5
TWI15G0236 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.7e-29 132.9 124 56.5
TWI60G0285 Tripterygium wilfordii HOM05D006772 ORTHO05D008367 1.7e-29 132.9 124 55.6
Hma1.2p1_0991F.1_g245070 Hydrangea macrophylla HOM05D006772 ORTHO05D008367 2.3e-29 132.5 124 56.5
Eucgr.D02187 Eucalyptus grandis HOM05D006772 ORTHO05D008367 3.0e-29 132.1 124 55.6
Sabra01G0111500 Salix brachista HOM05D006772 ORTHO05D008367 3.0e-29 132.1 127 56.7
Haze_08246 Corylus avellana HOM05D006772 ORTHO05D008367 3.9e-29 131.7 128 56.2
Gohir.D12G211500 Gossypium hirsutum HOM05D006772 ORTHO05D008367 3.9e-29 131.7 124 57.3
Manes.17G012000 Manihot esculenta HOM05D006772 ORTHO05D008367 3.9e-29 131.7 130 55.4
Nn6g33607 Nelumbo nucifera HOM05D006772 ORTHO05D008367 3.9e-29 131.7 124 56.5
Gohir.A03G001600 Gossypium hirsutum HOM05D006772 ORTHO05D008367 5.1e-29 131.3 124 58.1
Gohir.D03G170700 Gossypium hirsutum HOM05D006772 ORTHO05D008367 6.6e-29 131.0 124 58.1
Ciclev10033079m.g Citrus clementina HOM05D006772 ORTHO05D008367 1.1e-28 130.2 127 55.1
MD06G1033600 Malus domestica HOM05D006772 ORTHO05D008367 1.1e-28 130.2 127 55.1
Gohir.A12G208800 Gossypium hirsutum HOM05D006772 ORTHO05D008367 1.5e-28 129.8 124 56.5
Gorai.008G227000 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.5e-28 129.8 124 56.5
Nitab4.5_0000804g0080 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.5e-28 129.8 127 51.2
Gorai.003G181100 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.9e-28 129.4 124 57.3
Nitab4.5_0001666g0010 Nicotiana tabacum HOM05D006772 ORTHO05D008367 1.9e-28 129.4 124 51.6
FvH4_5g21990 Fragaria vesca HOM05D006772 ORTHO05D008367 3.3e-28 128.6 127 55.1
FAN08G3182 Fragaria x ananassa HOM05D006772 ORTHO05D008367 3.3e-28 128.6 127 54.3
FAN18G1611 Fragaria x ananassa HOM05D006772 ORTHO05D008367 3.3e-28 128.6 127 55.1
Rhsim07G0126400 Rhododendron simsii HOM05D006772 ORTHO05D008367 3.3e-28 128.6 124 54.8
Cfa012424 Carpinus fangiana HOM05D006772 ORTHO05D008367 4.3e-28 128.3 129 57.4
HanXRQChr03g0084031 Helianthus annuus HOM05D006772 ORTHO05D008367 4.3e-28 128.3 129 53.5
RcHm_v2.0_Chr7g0209491 Rosa chinensis HOM05D006772 ORTHO05D008367 4.3e-28 128.3 129 52.7
VMungo0251G2965 Vigna mungo HOM05D006772 ORTHO05D008367 7.3e-28 127.5 130 55.4
Eucgr.E00285 Eucalyptus grandis HOM05D006772 ORTHO05D008367 9.6e-28 127.1 128 53.1
FAN04G3098 Fragaria x ananassa HOM05D006772 ORTHO05D008367 1.2e-27 126.7 127 54.3
Sopen08g025600 Solanum pennellii HOM05D006772 ORTHO05D008367 2.1e-27 125.9 124 51.6
PGSC0003DMG400043394 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.8e-27 125.6 124 51.6
CANSAT21G2446 Cannabis sativa HOM05D006772 ORTHO05D008367 4.7e-27 124.8 132 50.8
Lj4g0015139 Lotus japonicus HOM05D006772 ORTHO05D008367 4.7e-27 124.8 138 54.3
Lsat_1_v5_gn_6_78680 Lactuca sativa HOM05D006772 ORTHO05D008367 6.2e-27 124.4 135 55.6
Solyc08g077020.1 Solanum lycopersicum HOM05D006772 ORTHO05D008367 6.2e-27 124.4 124 50.8
CSS0038918 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 4.0e-26 121.7 124 53.2
CSS0016213 Camellia sinensis var. sinensis HOM05D006772 ORTHO05D008367 6.8e-26 120.9 124 53.2
Prupe.5G037100 Prunus persica HOM05D006772 ORTHO05D008367 8.9e-26 120.6 127 50.4
Atru.chr6.1734 Acer truncatum HOM05D006772 ORTHO05D008367 1.5e-25 119.8 124 52.4
CiPaw.12G062700 Carya illinoinensis HOM05D006772 ORTHO05D008367 3.4e-25 118.6 132 49.2
Lj4g0019114 Lotus japonicus HOM05D006772 ORTHO05D008367 3.4e-25 118.6 138 52.9
FAN13G1934 Fragaria x ananassa HOM05D006772 ORTHO05D008367 4.4e-25 118.2 117 55.6
Sc01g0007510 Simmondsia chinensis HOM05D006772 ORTHO05D008367 9.9e-25 117.1 131 49.6
ECA240G4560 Erigeron canadensis HOM05D000236 ORTHO05D000192 2.2e-24 115.9 114 52.6
DCAR_024967 Daucus carota HOM05D006772 ORTHO05D008367 2.9e-24 115.5 129 51.2
Sed0022952 Sechium edule HOM05D006772 ORTHO05D008367 6.4e-24 114.4 125 46.4
PGR042G0478 Punica granatum HOM05D006772 ORTHO05D008367 7.1e-23 110.9 128 48.4
Sed0027084 Sechium edule HOM05D006772 ORTHO05D008367 7.1e-23 110.9 127 46.5
Gohir.A11G030300 Gossypium hirsutum HOM05D006772 ORTHO05D008367 2.1e-22 109.4 129 49.6
PGSC0003DMG400036785 Solanum tuberosum HOM05D006772 ORTHO05D008367 2.1e-22 109.4 114 49.1
MELO3C003403.2 Cucumis melo HOM05D006772 ORTHO05D008367 1.7e-21 106.3 131 49.6
MBI02_g14426_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 3.0e-21 105.5 124 46.8
Ah.12g054950 Amaranthus hybridus HOM05D006772 ORTHO05D008367 8.7e-21 104.0 108 49.1
CsaV3_3G049240 Cucumis sativus L. HOM05D006772 ORTHO05D008367 8.7e-21 104.0 133 51.1
BcaB02g09448 Brassica carinata HOM05D006772 ORTHO05D008367 7.3e-20 100.9 126 42.9
MBI05_g46462_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 7.3e-20 100.9 106 49.1
Aa31LG9G15310 Aethionema arabicum HOM05D006772 ORTHO05D008367 1.6e-19 99.8 127 42.5
THA.LOC104807956 Tarenaya hassleriana HOM05D006772 ORTHO05D008367 3.6e-19 98.6 124 44.4
A05p10490 Brassica napus HOM05D006772 ORTHO05D008367 1.4e-18 96.7 126 42.1
BraA05t19987Z Brassica rapa HOM05D006772 ORTHO05D008367 1.4e-18 96.7 126 42.1
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 2.4e-18 95.9 121 43.0
BcaB02g09453 Brassica carinata HOM05D006772 ORTHO05D008367 3.1e-18 95.5 126 41.3
BcaB02g09458 Brassica carinata HOM05D006772 ORTHO05D008367 3.1e-18 95.5 126 41.3
BcaB02g09462 Brassica carinata HOM05D006772 ORTHO05D008367 3.1e-18 95.5 126 41.3
BcaC02g11632 Brassica carinata HOM05D006772 ORTHO05D008367 3.1e-18 95.5 126 41.3
C04p12890 Brassica napus HOM05D006772 ORTHO05D008367 3.1e-18 95.5 126 41.3
BolC4t22934H Brassica oleracea HOM05D006772 ORTHO05D008367 3.1e-18 95.5 126 41.3
C04p64260 Brassica napus HOM05D006772 ORTHO05D008367 5.3e-18 94.7 125 41.6
CDE08G0662 Ceratophyllum demersum HOM05D006772 ORTHO05D008367 5.3e-18 94.7 120 42.5
Thhalv10017432m.g Eutrema salsugineum HOM05D006772 ORTHO05D008367 5.3e-18 94.7 126 43.7
PGR031G2239 Punica granatum HOM05D006772 ORTHO05D008367 6.9e-18 94.4 135 48.1
BcaB06g28837 Brassica carinata HOM05D006772 ORTHO05D008367 9.0e-18 94.0 126 42.9
A04p26870 Brassica napus HOM05D006772 ORTHO05D008367 1.5e-17 93.2 125 40.8
BraA04t18187Z Brassica rapa HOM05D006772 ORTHO05D008367 1.5e-17 93.2 125 40.8
CARHR129440 Cardamine hirsuta HOM05D006772 ORTHO05D008367 1.5e-17 93.2 126 44.4
BcaC02g07718 Brassica carinata HOM05D006772 ORTHO05D008367 5.8e-17 91.3 125 40.0
BolC4t27910H Brassica oleracea HOM05D006772 ORTHO05D008367 5.8e-17 91.3 125 40.0
Sp4g17500 Schrenkiella parvula HOM05D006772 ORTHO05D008367 7.6e-17 90.9 126 41.3
Carub.0004s1698 Capsella rubella HOM05D006772 ORTHO05D008367 2.2e-16 89.4 126 42.9
ATR0564G457 Amborella trichopoda HOM05D006772 ORTHO05D008367 8.4e-16 87.4 143 35.7
AT2G35290 Arabidopsis thaliana HOM05D006772 ORTHO05D008367 8.4e-16 87.4 126 42.1
CiPaw.11G092300 Carya illinoinensis HOM05D006772 ORTHO05D008367 4.6e-14 81.6 124 41.9
Gohir.D11G028900 Gossypium hirsutum HOM05D006772 ORTHO05D008367 4.6e-14 81.6 104 45.2
AL4G31320 Arabidopsis lyrata HOM05D006772 ORTHO05D008367 1.0e-13 80.5 118 41.5
Os03g0170100 Oryza sativa ssp. japonica HOM05D006772 ORTHO05D008367 1.3e-13 80.1 117 41.0
Dinv28946 Davidia involucrata HOM05D006772 ORTHO05D008367 3.9e-13 78.6 75 53.3
Peaxi162Scf00102g00514 Petunia axillaris HOM05D006772 ORTHO05D008367 4.3e-12 75.1 75 49.3
HPP92_011259 Vanilla planifolia HOM05D006772 ORTHO05D008367 1.3e-11 73.6 121 39.7
Zm00001eb402290 Zea mays HOM05D006772 ORTHO05D008367 2.1e-11 72.8 116 40.5
Gorai.007G031500 Gossypium raimondii HOM05D006772 ORTHO05D008367 1.4e-10 70.1 97 41.2
SEGI_37864 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.4e-10 69.3 96 36.5
EL10Ac5g12135 Beta vulgaris HOM05D003523 ORTHO05D008367 2.0e-09 66.2 102 39.2
MBI02_g18931_MAGBIO Magnolia biondii HOM05D006772 ORTHO05D008367 6.4e-08 61.2 124 34.7
SEGI_18606 Sequoiadendron giganteum HOM05D006772 ORTHO05D008367 2.1e-06 56.2 84 40.5


User provided reference genes

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