Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7816 Trifolium pratense HOM05D006208 ORTHO05D007606 1.7e-32 142.1 73 100.0
TPR.G35926 Trifolium pratense HOM05D006208 ORTHO05D007606 8.9e-18 93.2 61 78.7
Ca_03440_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 1.0e-13 79.7 66 63.6
Ca_08778_v3 Cicer arietinum L. HOM05D006208 ORTHO05D007606 1.0e-13 79.7 66 63.6
Medtr7g087140 Medicago truncatula HOM05D006208 ORTHO05D007606 1.5e-12 75.9 70 60.0
Lj1g0003173 Lotus japonicus HOM05D006208 ORTHO05D007606 4.3e-12 74.3 62 64.5
Glyma.19G119400 Glycine max HOM05D006208 ORTHO05D007606 9.5e-12 73.2 66 59.1
Lalb_Chr22g0358421 Lupinus albus HOM05D006208 ORTHO05D007606 9.5e-12 73.2 66 57.6
MD12G1014000 Malus domestica HOM05D006208 ORTHO05D007606 9.5e-12 73.2 61 59.0
QL07p016540 Quercus lobata HOM05D006208 ORTHO05D007606 1.2e-11 72.8 57 63.2
Gohir.A13G096300 Gossypium hirsutum HOM05D006208 ORTHO05D007606 1.6e-11 72.4 57 61.4
Gohir.D13G101700 Gossypium hirsutum HOM05D006208 ORTHO05D007606 1.6e-11 72.4 57 61.4
Gorai.013G113800 Gossypium raimondii HOM05D006208 ORTHO05D007606 1.6e-11 72.4 57 61.4
FAN04G2426 Fragaria x ananassa HOM05D006208 ORTHO05D007606 4.0e-10 67.8 70 48.6
RcHm_v2.0_Chr3g0495701 Rosa chinensis HOM05D006208 ORTHO05D007606 6.8e-10 67.0 66 53.0
FAN13G0695 Fragaria x ananassa HOM05D006208 ORTHO05D007606 8.9e-10 66.6 57 57.9
Thecc.05G239100 Theobroma cacao HOM05D006208 ORTHO05D007606 8.9e-10 66.6 70 50.0
vmacro07634 Vaccinium macrocarpon HOM05D006208 ORTHO05D007606 8.9e-10 66.6 57 57.9
COL.COLO4_08902 Corchorus olitorius HOM05D006208 ORTHO05D007606 1.2e-09 66.2 57 57.9
CANSAT78G0878 Cannabis sativa HOM05D006208 ORTHO05D007606 1.5e-09 65.9 76 47.4
VMungo1383G1214 Vigna mungo HOM05D006208 ORTHO05D007606 1.5e-09 65.9 64 57.8
Rhsim03G0045700 Rhododendron simsii HOM05D006208 ORTHO05D007606 2.6e-09 65.1 57 56.1
CiPaw.09G165300 Carya illinoinensis HOM05D006208 ORTHO05D007606 3.4e-09 64.7 76 47.4
Dinv14560 Davidia involucrata HOM05D006208 ORTHO05D007606 3.4e-09 64.7 67 52.2
Duzib177G0527 Durio zibethinus HOM05D006208 ORTHO05D007606 3.4e-09 64.7 76 47.4
Hma1.2p1_1127F.1_g259670 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 3.4e-09 64.7 59 55.9
Hma1.2p1_0776F.1_g216610 Hydrangea macrophylla HOM05D006208 ORTHO05D007606 9.8e-09 63.2 57 56.1
Ciclev10032470m.g Citrus clementina HOM05D006208 ORTHO05D007606 1.3e-08 62.8 58 53.4
Hund10725 Selenicereus undatus HOM05D006208 ORTHO05D007606 1.3e-08 62.8 57 56.1
Lj1A1159G88 Lonicera japonica HOM05D006208 ORTHO05D007606 1.7e-08 62.4 57 54.4
Atru.chr2.1570 Acer truncatum HOM05D006208 ORTHO05D007606 3.7e-08 61.2 67 46.3
FAN18G4346 Fragaria x ananassa HOM05D006208 ORTHO05D007606 3.7e-08 61.2 70 45.7
FvH4_3g02594 Fragaria vesca HOM05D006208 ORTHO05D007606 4.9e-08 60.8 57 54.4
Manes.08G150900 Manihot esculenta HOM05D006208 ORTHO05D007606 4.9e-08 60.8 57 52.6
Sc22g0000860 Simmondsia chinensis HOM05D006208 ORTHO05D007606 6.4e-08 60.5 57 50.9
EL10As12g24012 Beta vulgaris HOM05D006208 ORTHO05D007606 8.3e-08 60.1 56 53.6
TWI34G1475 Tripterygium wilfordii HOM05D006208 ORTHO05D007606 1.1e-07 59.7 57 57.9
Solyc10g085660.3 Solanum lycopersicum HOM05D006208 ORTHO05D007606 1.4e-07 59.3 58 51.7
Sopen10g035070 Solanum pennellii HOM05D006208 ORTHO05D007606 1.4e-07 59.3 58 51.7
arahy.Tifrunner.gnm1.ann1.71CHM8 Arachis hypogaea HOM05D006208 ORTHO05D007606 3.2e-07 58.2 58 55.2
Cpa.g.sc73.15 Carica papaya HOM05D006208 ORTHO05D007606 3.2e-07 58.2 63 46.0
AUR62036506 Chenopodium quinoa HOM05D006208 ORTHO05D007606 3.2e-07 58.2 57 49.1
PGSC0003DMG400008402 Solanum tuberosum HOM05D006208 ORTHO05D007606 3.2e-07 58.2 68 48.5
MELO3C019160.2 Cucumis melo HOM05D006208 ORTHO05D007606 4.1e-07 57.8 63 49.2
Potri.013G067600 Populus trichocarpa HOM05D006208 ORTHO05D007606 4.1e-07 57.8 70 44.3
Cc03_g15330 Coffea canephora HOM05D006208 ORTHO05D007606 7.0e-07 57.0 56 51.8
Sp1g07360 Schrenkiella parvula HOM05D006208 ORTHO05D007606 7.0e-07 57.0 57 47.4
FvH4_5g39040 Fragaria vesca HOM05D006208 ORTHO05D007606 9.2e-07 56.6 70 42.9
A06p05650 Brassica napus HOM05D000200 ORTHO05D000262 1.2e-06 56.2 57 49.1
BraA06t23774Z Brassica rapa HOM05D000200 ORTHO05D000262 1.2e-06 56.2 57 49.1
Cfa019872 Carpinus fangiana HOM05D006208 ORTHO05D007606 1.2e-06 56.2 57 47.4
Haze_20379 Corylus avellana HOM05D006208 ORTHO05D007606 1.2e-06 56.2 57 47.4
BcaC05g24798 Brassica carinata HOM05D006208 ORTHO05D007606 1.6e-06 55.8 57 49.1
C05p06810 Brassica napus HOM05D000200 ORTHO05D000262 1.6e-06 55.8 57 49.1
BolC5t29440H Brassica oleracea HOM05D000200 ORTHO05D000262 1.6e-06 55.8 57 49.1
TAR636G0902 Trochodendron aralioides HOM05D006208 ORTHO05D007606 1.6e-06 55.8 56 48.2
GSVIVG01029918001 Vitis vinifera HOM05D006208 ORTHO05D007606 1.6e-06 55.8 70 42.9
AUR62037069 Chenopodium quinoa HOM05D006208 ORTHO05D007606 2.0e-06 55.5 57 47.4
Nitab4.5_0000381g0210 Nicotiana tabacum HOM05D006208 ORTHO05D007606 2.7e-06 55.1 57 47.4
Nitab4.5_0015172g0010 Nicotiana tabacum HOM05D006208 ORTHO05D007606 2.7e-06 55.1 57 47.4
THA.LOC104798848 Tarenaya hassleriana HOM05D006208 ORTHO05D007606 3.5e-06 54.7 57 50.9
Aqoxy6G01592 Aquilegia oxysepala HOM05D006208 ORTHO05D007606 6.0e-06 53.9 57 49.1
BcaB07g34110 Brassica carinata HOM05D006208 ORTHO05D007606 6.0e-06 53.9 57 47.4
AT1G08710 Arabidopsis thaliana HOM05D006208 ORTHO05D007606 7.8e-06 53.5 57 49.1
CAN.G1018.11 Capsicum annuum HOM05D006208 ORTHO05D007606 7.8e-06 53.5 58 44.8
ClCG04G006060 Citrullus lanatus HOM05D006208 ORTHO05D007606 7.8e-06 53.5 62 48.4


User provided reference genes

Program Settings