Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 0.0e+00 1821.6 917 100.0
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 0.0e+00 1598.2 918 88.3
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 0.0e+00 1555.0 913 86.6
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 0.0e+00 1550.4 914 86.8
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 0.0e+00 1403.7 923 78.9
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 0.0e+00 1359.7 921 77.7
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 0.0e+00 1342.0 929 74.7
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1294.6 917 74.6
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 0.0e+00 1192.9 920 68.7
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1137.1 933 67.0
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 0.0e+00 1136.3 933 67.1
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 0.0e+00 1095.1 941 61.1
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 0.0e+00 1080.5 930 62.0
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 0.0e+00 1075.5 932 62.0
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 5.6e-311 1070.8 920 62.1
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 2.0e-308 1062.4 931 60.8
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-308 1062.4 919 61.8
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.5e-303 1046.2 926 61.1
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 2.8e-302 1042.0 912 60.7
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 1.7e-299 1032.7 928 59.5
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 2.2e-299 1032.3 924 59.8
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 1.1e-298 1030.0 929 59.4
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 7.1e-298 1027.3 930 58.6
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 1.2e-297 1026.5 931 59.0
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 3.9e-296 1021.5 917 59.7
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 6.7e-296 1020.8 937 58.3
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 1.1e-295 1020.0 945 58.6
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 5.6e-295 1017.7 919 58.8
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 1.4e-293 1013.1 819 65.9
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 3.1e-293 1011.9 925 58.1
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 2.6e-292 1008.8 937 57.6
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 8.7e-288 993.8 937 57.4
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-284 982.6 935 58.2
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 2.7e-281 972.2 933 57.3
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.0e-280 968.8 996 54.6
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.5e-279 966.5 915 56.7
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 3.7e-278 961.8 928 56.8
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 7.6e-276 954.1 935 57.2
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 1.0e-275 953.7 907 57.2
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.7e-273 945.7 944 53.7
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 4.6e-273 944.9 943 53.9
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 3.3e-271 938.7 940 54.1
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 3.7e-270 935.3 922 53.6
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 3.7e-270 935.3 925 53.5
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 1.1e-269 933.7 920 53.8
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 5.9e-268 927.9 937 54.2
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 2.2e-267 926.0 925 53.3
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.1e-266 923.7 927 54.3
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 4.2e-266 921.8 941 53.1
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 4.4e-263 911.8 928 53.9
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.1e-261 907.1 942 53.9
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 2.4e-261 906.0 730 64.7
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 9.1e-261 904.0 855 59.1
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 7.7e-260 901.0 941 52.6
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 6.1e-257 891.3 924 51.3
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 1.1e-255 887.1 914 52.3
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 5.7e-255 884.8 928 51.7
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 2.2e-254 882.9 920 55.8
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 1.0e-251 874.0 954 51.7
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 1.3e-251 873.6 930 51.6
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 2.2e-251 872.8 938 49.8
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 4.7e-249 865.1 908 51.7
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 8.8e-248 860.9 688 66.0
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 4.4e-247 858.6 910 51.4
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 7.0e-245 851.3 921 50.7
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 9.1e-245 850.9 938 50.7
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 1.2e-244 850.5 913 51.2
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 6.5e-243 844.7 907 50.8
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 3.6e-241 839.0 923 49.9
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 1.8e-240 836.6 909 50.2
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 3.0e-240 835.9 931 50.1
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 2.6e-239 832.8 921 49.4
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.2e-236 823.9 926 51.0
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-236 823.5 719 61.2
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 2.3e-235 819.7 929 48.4
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 1.3e-230 803.9 951 48.4
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.3e-230 803.9 925 48.9
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 9.2e-229 797.7 1154 42.5
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 2.0e-228 796.6 936 48.7
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 6.8e-224 781.6 1083 44.6
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.2e-223 780.8 923 47.2
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 3.2e-221 772.7 752 55.1
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 7.0e-221 771.5 915 47.5
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 2.8e-217 759.6 937 47.8
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.4e-216 757.3 926 47.7
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 3.1e-216 756.1 928 47.5
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 2.2e-214 750.0 906 46.8
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 5.4e-213 745.3 770 53.2
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 6.6e-211 738.4 922 46.2
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 7.3e-210 734.9 500 73.4
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 3.0e-203 713.0 911 46.2
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 4.3e-202 709.1 841 48.5
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.9e-194 683.7 579 62.5
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 2.8e-193 679.9 934 43.4
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 9.0e-192 674.9 726 51.2
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.9e-190 669.1 688 52.6
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 1.6e-188 664.1 415 80.7
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.0e-188 662.1 908 46.4
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.5e-183 647.5 654 55.8
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.2e-177 625.5 452 69.7
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 7.1e-165 585.5 472 68.0
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.8e-163 580.9 471 69.2
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.3e-162 576.6 484 61.2
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 4.8e-153 546.2 967 36.7
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.4e-152 544.7 920 40.1
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.4e-136 490.7 520 52.3
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 4.1e-128 463.4 920 34.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 8.0e-124 449.1 487 52.6
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.8e-123 446.0 481 52.6
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.5e-114 418.3 397 58.4
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 5.2e-107 393.3 509 43.8
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 1.1e-104 385.6 362 58.0
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 8.6e-102 375.9 329 60.8
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 6.2e-100 369.8 255 71.4
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 8.3e-97 359.4 1059 27.9
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.9e-93 348.2 222 74.8
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.9e-93 348.2 222 74.8
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 2.6e-90 337.8 477 45.1
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 3.7e-89 334.0 454 44.1
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.7e-89 334.0 423 48.2
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.3e-86 324.7 304 55.6
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 9.5e-85 319.3 280 62.1
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.6e-84 317.4 393 48.6
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 1.8e-83 315.1 533 37.1
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 5.6e-77 293.5 615 36.6
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.1e-76 289.7 331 48.9
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 9.9e-66 256.1 334 46.7
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 9.3e-64 249.6 247 57.1
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.0e-62 244.6 467 36.2
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 5.6e-61 240.4 511 32.1
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.2e-56 224.2 247 51.8
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.0e-51 207.6 247 44.9
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 3.4e-50 204.5 486 30.5
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 4.9e-49 200.7 389 34.2
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.0e-46 191.4 210 46.7
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.2e-40 171.0 242 45.9
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.2e-40 171.0 113 70.8
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 8.8e-38 163.3 137 55.5
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.3e-36 157.1 178 50.0
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 6.3e-36 157.1 178 50.0
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 1.0e-30 139.8 170 49.4
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 3.0e-30 138.3 184 43.5
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-30 138.3 170 48.8
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.4e-27 129.4 237 38.4
Psat5g100440 Pisum sativum HOM05D004183 ORTHO05D005022 2.4e-27 128.6 158 53.2
RcHm_v2.0_Chr1g0319771 Rosa chinensis HOM05D004183 ORTHO05D005022 7.0e-27 127.1 146 51.4
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 9.1e-27 126.7 202 41.1
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 7.2e-24 117.1 78 76.9
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 1.3e-20 106.3 159 37.7
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 1.5e-16 92.8 75 57.3
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 9.4e-16 90.1 940 20.6
RcHm_v2.0_Chr1g0320921 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-15 89.0 79 60.8
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.7e-15 88.6 200 31.5
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 6.1e-15 87.4 117 35.9
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.0e-13 82.4 135 40.7
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 5.3e-11 74.3 102 40.2
CARHR185280 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.5e-10 71.2 45 68.9
CARHR154530 Cardamine hirsuta HOM05D004183 ORTHO05D005022 3.0e-06 58.5 53 49.1
Hma1.2p1_0197F.1_g085110 Hydrangea macrophylla HOM05D004183 ORTHO05D008470 5.2e-06 57.8 69 43.5


User provided reference genes

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