Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 0.0e+00 1211.8 593 100.0
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 0.0e+00 1117.1 593 93.1
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 0.0e+00 1108.2 596 91.4
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 5.8e-309 1063.5 593 88.5
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 3.9e-305 1050.8 594 87.4
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 6.0e-298 1026.9 595 85.2
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 7.3e-296 1020.0 570 86.5
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 7.3e-296 1020.0 594 84.8
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.4e-291 1005.7 599 83.6
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 4.3e-288 994.2 587 83.1
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 1.7e-284 982.2 611 80.9
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 4.2e-283 977.6 598 80.6
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 1.8e-281 972.2 598 79.4
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 8.7e-281 969.9 598 80.1
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 8.7e-281 969.9 568 81.9
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 1.1e-280 969.5 595 80.0
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 3.7e-279 964.5 594 78.8
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.2e-279 963.8 568 81.0
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 6.2e-279 963.8 568 81.0
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.8e-278 962.2 568 81.2
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 9.0e-278 959.9 587 79.6
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 2.0e-277 958.7 568 80.5
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 5.8e-277 957.2 571 80.9
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 5.8e-277 957.2 568 80.3
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.3e-276 956.1 594 78.5
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.7e-276 955.7 600 77.7
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.6e-274 949.1 568 79.9
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 3.0e-273 944.9 595 77.1
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 3.9e-273 944.5 575 79.1
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 5.1e-273 944.1 579 79.1
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 8.7e-273 943.3 566 80.2
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 1.1e-272 943.0 568 79.6
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 9.6e-272 939.9 597 77.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 1.6e-271 939.1 567 79.9
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 6.3e-271 937.2 596 76.7
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 8.2e-271 936.8 566 79.0
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.1e-270 936.4 574 77.7
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 4.1e-270 934.5 568 78.5
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 5.3e-270 934.1 576 77.8
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.5e-269 932.6 598 75.6
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 1.5e-269 932.6 598 75.4
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 2.2e-268 928.7 575 78.4
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 2.9e-268 928.3 593 75.7
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 3.8e-268 927.9 587 76.0
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 8.5e-268 926.8 599 75.5
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 1.4e-267 926.0 597 75.9
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 1.6e-266 922.5 567 77.6
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 3.6e-266 921.4 576 78.0
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 3.6e-266 921.4 597 75.4
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 3.6e-266 921.4 605 74.4
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 4.6e-266 921.0 572 78.5
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 6.1e-266 920.6 593 75.7
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 7.9e-266 920.2 617 74.1
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.0e-265 919.8 617 74.1
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 2.3e-265 918.7 573 77.0
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 3.0e-265 918.3 569 77.0
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 5.1e-265 917.5 600 75.5
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 6.7e-265 917.1 578 76.3
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 8.7e-265 916.8 568 78.3
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.5e-264 916.0 567 77.4
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.5e-264 916.0 597 74.9
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 1.9e-264 915.6 603 75.0
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.9e-264 915.6 610 73.0
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 2.5e-264 915.2 588 75.9
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 3.3e-264 914.8 568 78.7
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 4.3e-264 914.4 617 73.7
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 5.7e-264 914.1 600 75.5
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 1.3e-263 912.9 599 74.1
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.6e-263 912.5 617 73.7
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 2.2e-263 912.1 568 76.8
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.1e-262 909.8 600 74.5
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 1.8e-262 909.1 606 74.8
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 3.1e-262 908.3 572 75.9
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 5.3e-262 907.5 605 73.1
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.1e-262 906.7 600 74.2
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 1.5e-261 906.0 602 73.4
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.5e-261 906.0 604 73.5
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.0e-261 905.6 580 76.2
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 2.6e-261 905.2 568 76.1
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 3.4e-261 904.8 601 73.4
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 1.7e-260 902.5 604 73.7
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 3.8e-260 901.4 603 73.6
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 8.5e-260 900.2 600 73.7
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 8.5e-260 900.2 568 76.6
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 1.4e-259 899.4 571 75.8
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 1.9e-259 899.0 615 71.9
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 4.2e-259 897.9 615 71.7
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 5.5e-259 897.5 603 74.1
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 9.4e-259 896.7 545 78.2
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 9.4e-259 896.7 572 74.0
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.0e-257 893.3 601 72.0
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 2.3e-257 892.1 597 72.4
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 3.9e-257 891.3 575 74.6
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 5.1e-257 891.0 578 75.6
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 1.1e-256 889.8 697 65.7
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 2.0e-256 889.0 580 75.7
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 9.7e-256 886.7 598 71.9
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 9.7e-256 886.7 615 71.1
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 3.1e-254 881.7 545 78.0
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 4.1e-254 881.3 600 71.5
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 9.1e-254 880.2 600 71.2
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 1.2e-253 879.8 573 75.0
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-253 878.6 602 71.4
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-253 878.6 574 73.3
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 4.5e-253 877.9 602 70.9
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 7.7e-253 877.1 600 71.2
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 7.7e-253 877.1 602 70.9
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.3e-252 876.3 600 71.0
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.3e-252 876.3 603 71.6
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 5.0e-252 874.4 600 70.5
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 6.5e-252 874.0 600 70.7
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.5e-252 873.6 601 70.9
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 1.4e-251 872.8 574 72.6
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 1.4e-251 872.8 571 72.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 8.8e-249 863.6 527 79.1
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 4.4e-248 861.3 596 72.1
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 4.5e-245 851.3 609 70.9
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 1.5e-243 846.3 521 77.9
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 3.6e-242 841.6 599 71.3
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 1.8e-241 839.3 605 69.6
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 2.7e-234 815.5 496 79.4
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 3.6e-234 815.1 555 69.2
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 6.1e-234 814.3 583 67.8
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 8.3e-231 803.9 929 49.6
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 3.6e-226 788.5 894 49.7
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 5.6e-211 738.0 568 65.3
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.2e-210 736.9 610 60.8
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.1e-209 733.8 568 65.0
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 2.3e-204 716.1 536 68.1
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 6.4e-199 698.0 403 83.1
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 2.4e-193 679.5 560 57.7
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 2.0e-184 649.8 449 68.4
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 1.1e-174 617.5 342 88.6
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.8e-168 595.1 434 69.6
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 1.0e-156 557.8 422 69.0
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 2.3e-148 530.0 576 47.9
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 7.7e-144 515.0 309 82.5
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.9e-135 486.5 445 60.9
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 5.5e-118 429.1 351 59.0
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 2.8e-101 373.6 401 44.6
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.8e-100 370.9 512 41.0
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.7e-98 364.4 534 38.0
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 6.6e-87 325.9 188 85.1
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 1.3e-82 311.6 214 66.8
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 2.4e-81 307.4 228 65.8
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 1.9e-78 297.7 621 33.2
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 9.5e-78 295.4 220 65.0
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.5e-70 270.8 234 56.4
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.5e-70 270.8 234 56.4
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.1e-65 255.4 374 35.0
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 3.0e-63 247.3 169 68.6
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 7.3e-62 242.7 169 66.9
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 4.5e-51 206.8 227 54.6
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 7.6e-51 206.1 228 52.2
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.8e-44 184.9 111 83.8
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.4e-27 127.5 72 84.7
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 2.9e-26 124.4 158 47.5
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 2.9e-26 124.4 158 47.5
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 1.3e-18 99.0 106 55.7
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 1.0e-15 89.4 42 92.9
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.3e-13 82.4 49 69.4
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.3e-13 82.4 49 69.4
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 4.1e-12 77.4 43 76.7
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 4.1e-12 77.4 48 68.8


User provided reference genes

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