Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 2.4e-212 741.9 372 100.0
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 8.0e-131 471.1 283 87.6
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 2.8e-115 419.5 256 86.7
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 3.7e-112 409.1 294 74.5
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 1.6e-110 403.7 293 74.4
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 8.6e-109 397.9 292 72.9
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 9.5e-108 394.4 295 72.5
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 1.2e-105 387.5 261 79.3
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 5.4e-103 378.6 264 73.9
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 1.7e-101 373.6 268 73.5
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 1.7e-101 373.6 254 75.2
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.3e-101 373.2 253 74.3
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 2.3e-101 373.2 253 74.3
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 3.9e-101 372.5 289 67.8
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 5.0e-101 372.1 250 73.6
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 6.6e-101 371.7 250 73.6
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 3.3e-100 369.4 261 73.6
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 3.3e-100 369.4 250 75.2
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 5.6e-100 368.6 294 69.7
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 1.2e-99 367.5 251 74.5
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 2.1e-99 366.7 247 74.5
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 3.6e-99 365.9 251 73.7
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 8.0e-99 364.8 284 68.3
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.0e-98 364.4 274 70.4
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 2.3e-98 363.2 261 70.9
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 6.8e-98 361.7 263 69.2
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 1.2e-97 360.9 264 69.7
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.2e-97 360.9 265 69.4
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.5e-97 360.5 245 73.5
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.5e-97 360.5 264 69.3
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 4.4e-97 359.0 246 73.2
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 7.5e-97 358.2 273 68.9
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.3e-96 357.5 277 68.2
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 1.7e-96 357.1 248 72.6
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 2.2e-96 356.7 251 70.9
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 4.9e-96 355.5 249 70.7
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 6.4e-96 355.1 250 70.0
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 1.9e-95 353.6 274 66.8
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.4e-95 353.2 270 67.8
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 3.2e-95 352.8 292 65.8
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 5.4e-95 352.1 246 72.4
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 5.4e-95 352.1 279 67.4
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 5.4e-95 352.1 246 72.4
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 7.0e-95 351.7 269 68.4
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 1.2e-94 350.9 252 71.0
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 1.2e-94 350.9 243 71.2
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.7e-94 349.7 243 70.4
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 2.7e-94 349.7 245 71.4
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 3.5e-94 349.4 233 73.4
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 6.0e-94 348.6 238 71.8
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 1.0e-93 347.8 249 70.7
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 1.3e-93 347.4 244 72.1
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 1.3e-93 347.4 253 75.1
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 3.9e-93 345.9 297 64.0
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 5.0e-93 345.5 290 62.4
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 6.6e-93 345.1 233 71.7
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 6.6e-93 345.1 249 69.9
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 1.1e-92 344.4 274 66.4
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 1.9e-92 343.6 248 70.2
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 1.9e-92 343.6 275 66.5
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 2.5e-92 343.2 274 66.1
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.6e-92 342.0 299 63.5
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 5.6e-92 342.0 262 67.9
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 5.6e-92 342.0 292 63.0
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 9.5e-92 341.3 264 69.3
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 9.5e-92 341.3 241 71.0
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 1.6e-91 340.5 273 65.2
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.6e-91 340.5 242 67.4
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.1e-91 340.1 244 68.4
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.1e-91 340.1 290 63.1
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 2.8e-91 339.7 286 62.9
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 8.1e-91 338.2 275 65.5
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 1.1e-90 337.8 253 70.0
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.1e-90 337.8 245 67.8
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 1.4e-90 337.4 284 63.0
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 1.8e-90 337.0 238 70.6
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 1.8e-90 337.0 275 65.5
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 1.8e-90 337.0 274 65.0
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 3.1e-90 336.3 277 63.9
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 5.2e-90 335.5 282 64.9
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 5.2e-90 335.5 291 59.8
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 6.8e-90 335.1 251 69.7
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 6.8e-90 335.1 250 66.8
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.2e-89 334.3 248 69.0
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 1.2e-89 334.3 291 59.5
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 4.4e-89 332.4 274 65.3
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 4.9e-88 328.9 243 69.5
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 1.4e-87 327.4 274 63.1
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 7.1e-87 325.1 249 65.9
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.0e-85 321.2 219 71.7
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 1.0e-85 321.2 240 67.9
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 3.0e-85 319.7 248 64.1
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.8e-82 310.5 250 66.4
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.5e-81 307.4 246 64.2
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 7.6e-81 305.1 283 59.7
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 2.4e-79 300.1 294 60.5
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 7.1e-79 298.5 283 56.9
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.1e-78 297.0 248 61.3
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.3e-77 294.3 202 72.8
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 2.3e-77 293.5 236 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 5.2e-74 282.3 237 60.3
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 2.0e-73 280.4 272 54.4
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 2.4e-71 273.5 208 64.4
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 5.1e-69 265.8 242 55.0
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.9e-68 263.8 206 65.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 5.3e-66 255.8 181 70.7
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 2.4e-58 230.3 265 49.4
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.9e-56 222.6 140 75.0
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 2.9e-48 196.8 151 66.9
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 6.7e-45 185.7 257 42.8
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 6.7e-45 185.7 211 46.4
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 1.0e-40 171.8 87 97.7
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.3e-37 161.4 212 41.0
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 7.2e-31 139.0 114 58.8
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 2.8e-27 127.1 137 52.6
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 7.4e-20 102.4 83 57.8
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 1.3e-19 101.7 62 79.0
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 3.7e-19 100.1 118 51.7
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 1.4e-18 98.2 68 63.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 2.6e-17 94.0 56 76.8
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 1.9e-15 87.8 62 69.4
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.9e-15 87.8 165 37.6
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 4.2e-15 86.7 63 66.7
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 5.5e-15 86.3 63 60.3
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 1.4e-13 81.6 173 36.4
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 2.0e-12 77.8 75 60.0
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 4.4e-12 76.6 50 74.0
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 2.8e-11 73.9 51 68.6
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 2.8e-11 73.9 169 34.3
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 5.3e-10 69.7 49 67.3
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 4.5e-09 66.6 53 60.4
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 5.0e-08 63.2 43 67.4
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 1.1e-07 62.0 82 42.7


User provided reference genes

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