Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7749 Trifolium pratense HOM05D000026 ORTHO05D013700 4.4e-104 381.3 198 100.0
TPR.G4 Trifolium pratense HOM05D000026 ORTHO05D001292 1.9e-54 216.5 125 95.2
Medtr1g099260 Medicago truncatula HOM05D000026 ORTHO05D001292 1.1e-46 190.7 126 85.7
Psat0s3359g0040 Pisum sativum HOM05D000026 ORTHO05D001292 4.6e-45 185.3 126 85.7
Lj5g0002118 Lotus japonicus HOM05D000026 ORTHO05D001292 1.1e-33 147.5 121 72.7
Ca_10693_v3 Cicer arietinum L. HOM05D000026 ORTHO05D001292 5.3e-33 145.2 128 77.3
Lalb_Chr06g0161491 Lupinus albus HOM05D000026 ORTHO05D001292 3.6e-29 132.5 122 66.4
Glyma.10G227000 Glycine max HOM05D000026 ORTHO05D001292 1.3e-26 124.0 75 76.0
QL02p024613 Quercus lobata HOM05D000026 ORTHO05D001292 3.1e-25 119.4 138 55.8
CiPaw.15G019300 Carya illinoinensis HOM05D000026 ORTHO05D001292 1.2e-24 117.5 124 62.9
Haze_17729 Corylus avellana HOM05D000026 ORTHO05D001292 2.9e-23 112.8 132 56.1
MD08G1201700 Malus domestica HOM05D000026 ORTHO05D001292 2.9e-23 112.8 120 55.8
Potri.005G189500 Populus trichocarpa HOM05D000026 ORTHO05D001292 3.8e-23 112.5 128 57.0
MD10G1020300 Malus domestica HOM05D000026 ORTHO05D001292 5.0e-23 112.1 121 57.9
Phvul.007G078200 Phaseolus vulgaris HOM05D000026 ORTHO05D001292 6.5e-23 111.7 116 59.5
Manes.18G089500 Manihot esculenta HOM05D000026 ORTHO05D001292 8.5e-23 111.3 129 52.7
DCAR_010091 Daucus carota HOM05D000026 ORTHO05D001292 1.5e-22 110.5 126 55.6
Prupe.8G022700 Prunus persica HOM05D000026 ORTHO05D001292 1.5e-22 110.5 122 59.0
AT5G42120 Arabidopsis thaliana HOM05D000026 ORTHO05D001292 1.9e-22 110.2 129 54.3
BcaC06g33850 Brassica carinata HOM05D000026 ORTHO05D001292 2.5e-22 109.8 123 55.3
BolC7t44137H Brassica oleracea HOM05D000026 ORTHO05D001292 2.5e-22 109.8 123 55.3
PGSC0003DMG400000789 Solanum tuberosum HOM05D000026 ORTHO05D001292 5.5e-22 108.6 126 58.7
A06p41430 Brassica napus HOM05D000026 ORTHO05D001292 9.4e-22 107.8 129 55.8
Sp2g16310 Schrenkiella parvula HOM05D000026 ORTHO05D001292 1.2e-21 107.5 141 52.5
TWI34G1929 Tripterygium wilfordii HOM05D000026 ORTHO05D001292 1.2e-21 107.5 133 52.6
C07p36210 Brassica napus HOM05D000026 ORTHO05D001292 2.1e-21 106.7 113 57.5
Solyc04g071000.1 Solanum lycopersicum HOM05D000026 ORTHO05D001292 3.6e-21 105.9 135 54.1
AL8G19750 Arabidopsis lyrata HOM05D000026 ORTHO05D001292 6.1e-21 105.1 131 51.9
Carub.0008s0723 Capsella rubella HOM05D000026 ORTHO05D001292 6.1e-21 105.1 136 50.0
Ciclev10003430m.g Citrus clementina HOM05D000026 ORTHO05D001292 8.0e-21 104.8 126 54.8
Sopen04g026950 Solanum pennellii HOM05D000026 ORTHO05D001292 8.0e-21 104.8 135 53.3
MD10G1019800 Malus domestica HOM05D000026 ORTHO05D013700 1.0e-20 104.4 123 55.3
BraA06t27069Z Brassica rapa HOM05D000026 ORTHO05D001292 1.4e-20 104.0 129 55.0
Sabra05G0144800 Salix brachista HOM05D000026 ORTHO05D001292 1.4e-20 104.0 104 56.7
Thecc.08G147100 Theobroma cacao HOM05D000026 ORTHO05D001292 1.4e-20 104.0 126 54.0
Aqoxy6G00383 Aquilegia oxysepala HOM05D000026 ORTHO05D001292 2.3e-20 103.2 125 52.8
CARHR194620 Cardamine hirsuta HOM05D000026 ORTHO05D001292 2.3e-20 103.2 127 52.0
Aa31LG4G5570 Aethionema arabicum HOM05D000026 ORTHO05D001292 4.0e-20 102.4 125 52.8
Nitab4.5_0004019g0030 Nicotiana tabacum HOM05D000026 ORTHO05D001292 4.0e-20 102.4 118 56.8
TWI60G0636 Tripterygium wilfordii HOM05D000026 ORTHO05D001292 5.2e-20 102.1 136 49.3
BcaNung06417 Brassica carinata HOM05D000026 ORTHO05D001292 8.8e-20 101.3 128 51.6
Nitab4.5_0000299g0310 Nicotiana tabacum HOM05D000026 ORTHO05D001292 8.8e-20 101.3 120 57.5
CAN.G715.8 Capsicum annuum HOM05D000026 ORTHO05D001292 1.5e-19 100.5 124 55.6
Actinidia01149 Actinidia chinensis HOM05D000026 ORTHO05D001292 2.6e-19 99.8 119 55.5
TAR376G0779 Trochodendron aralioides HOM05D000026 ORTHO05D001292 2.6e-19 99.8 124 57.3
VMungo0720G0999 Vigna mungo HOM05D000026 ORTHO05D001292 2.6e-19 99.8 121 56.2
ClCG08G006580 Citrullus lanatus HOM05D000026 ORTHO05D001292 3.4e-19 99.4 122 56.6
Thhalv10005258m.g Eutrema salsugineum HOM05D000026 ORTHO05D001292 3.4e-19 99.4 134 52.2
THA.LOC104798882 Tarenaya hassleriana HOM05D000026 ORTHO05D001292 3.4e-19 99.4 122 52.5
CSS0011331 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D001292 5.7e-19 98.6 127 52.0
Eucgr.F04258 Eucalyptus grandis HOM05D000026 ORTHO05D001292 1.7e-18 97.1 126 50.8
Sc02g0004310 Simmondsia chinensis HOM05D000026 ORTHO05D001292 4.8e-18 95.5 142 46.5
Duzib093G2132 Durio zibethinus HOM05D000026 ORTHO05D001292 8.3e-18 94.7 126 50.8
COL.COLO4_08291 Corchorus olitorius HOM05D000026 ORTHO05D001292 4.1e-17 92.4 124 50.0
PGR044G2503 Punica granatum HOM05D000026 ORTHO05D001292 5.4e-17 92.0 111 52.3
RcHm_v2.0_Chr7g0230531 Rosa chinensis HOM05D000026 ORTHO05D001292 9.1e-17 91.3 126 49.2
Oeu007016.1 Olea europaea HOM05D000026 ORTHO05D001292 2.0e-16 90.1 139 45.3
Migut.N03216 Erythranthe guttata HOM05D000026 ORTHO05D001292 4.5e-16 89.0 138 42.8
CSS0019825 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D001292 7.7e-16 88.2 127 49.6
TPR.G7739 Trifolium pratense HOM05D000026 ORTHO05D013700 7.7e-16 88.2 43 95.3
Cc10_g14140 Coffea canephora HOM05D000026 ORTHO05D001292 1.0e-15 87.8 113 52.2
Nn5g28673 Nelumbo nucifera HOM05D000026 ORTHO05D001292 1.3e-15 87.4 129 53.5
Gohir.D02G071600 Gossypium hirsutum HOM05D000026 ORTHO05D001292 5.0e-15 85.5 123 49.6
Gorai.005G080800 Gossypium raimondii HOM05D000026 ORTHO05D001292 5.0e-15 85.5 123 49.6
Dinv41106 Davidia involucrata HOM05D001639 ORTHO05D008274 8.5e-15 84.7 94 55.3
FAN08G3414 Fragaria x ananassa HOM05D000026 ORTHO05D001292 1.1e-14 84.3 75 53.3
FAN18G3562 Fragaria x ananassa HOM05D000026 ORTHO05D001292 1.5e-14 84.0 75 53.3
Sed0001055 Sechium edule HOM05D000026 ORTHO05D001292 1.9e-14 83.6 77 50.6
DCAR_001092 Daucus carota HOM05D000026 ORTHO05D001292 2.5e-14 83.2 127 44.1
FvH4_5g32800 Fragaria vesca HOM05D000026 ORTHO05D001292 3.2e-14 82.8 120 48.3
MELO3C008394.2 Cucumis melo HOM05D000026 ORTHO05D001292 7.2e-14 81.6 76 50.0
CsaV3_6G029650 Cucumis sativus L. HOM05D000026 ORTHO05D001292 9.4e-14 81.3 125 51.2
CsaV3_6G030850 Cucumis sativus L. HOM05D000026 ORTHO05D001292 9.4e-14 81.3 125 51.2
Cpa.g.sc49.42 Carica papaya HOM05D000026 ORTHO05D001292 6.1e-13 78.6 77 49.4
CsaV3_6G029640 Cucumis sativus L. HOM05D000026 ORTHO05D013700 2.3e-12 76.6 71 47.9
CsaV3_6G030870 Cucumis sativus L. HOM05D000026 ORTHO05D013700 2.3e-12 76.6 71 47.9
FvH4_4g18200 Fragaria vesca HOM05D000026 ORTHO05D001292 4.0e-12 75.9 120 46.7
Gohir.A02G065700 Gossypium hirsutum HOM05D000026 ORTHO05D001292 5.2e-12 75.5 76 48.7
Atru.chr13.2239 Acer truncatum HOM05D000026 ORTHO05D001292 1.2e-11 74.3 77 48.1
CANSAT25G0644 Cannabis sativa HOM05D000026 ORTHO05D001292 2.0e-11 73.6 121 43.0
FAN07G0884 Fragaria x ananassa HOM05D000026 ORTHO05D001292 9.8e-11 71.2 127 44.1
HanXRQChr05g0161421 Helianthus annuus HOM05D000026 ORTHO05D001292 9.8e-11 71.2 121 44.6
COL.COLO4_08292 Corchorus olitorius HOM05D000026 ORTHO05D013700 1.3e-10 70.9 76 46.1
Hma1.2p1_0483F.1_g162760 Hydrangea macrophylla HOM05D000026 ORTHO05D001292 3.7e-10 69.3 74 48.6
PSO622G0001 Papaver somniferum HOM05D000026 ORTHO05D001292 4.9e-10 68.9 128 44.5
SGA_v2.0_scaffold25G11185 Striga asiatica HOM05D000026 ORTHO05D001292 1.1e-09 67.8 142 38.7
MSTRG.22367 Avicennia marina HOM05D000026 ORTHO05D013700 1.4e-09 67.4 75 42.7
PSO675G5222 Papaver somniferum HOM05D000026 ORTHO05D001292 1.4e-09 67.4 130 41.5
Lsat_1_v5_gn_6_98801 Lactuca sativa HOM05D000026 ORTHO05D001292 1.8e-09 67.0 100 42.0
Lsat_1_v5_gn_1_8741 Lactuca sativa HOM05D000026 ORTHO05D001292 3.1e-09 66.2 123 38.2
PSO675G5299 Papaver somniferum HOM05D000026 ORTHO05D001292 1.2e-08 64.3 125 43.2
AUR62013518 Chenopodium quinoa HOM05D000026 ORTHO05D034364 2.0e-08 63.5 127 41.7
HanXRQChr11g0333331 Helianthus annuus HOM05D000026 ORTHO05D001292 3.5e-08 62.8 106 41.5
Dinv10338 Davidia involucrata HOM05D000026 ORTHO05D001292 4.5e-08 62.4 107 43.9
MD11G1205300 Malus domestica HOM05D000026 ORTHO05D013700 4.5e-08 62.4 74 44.6
SGA_v2.0_scaffold42G15983 Striga asiatica HOM05D000026 ORTHO05D001292 4.5e-08 62.4 126 43.7
ECA236G4437 Erigeron canadensis HOM05D000026 ORTHO05D001292 1.0e-07 61.2 107 44.9
Oeu015112.1 Olea europaea HOM05D000026 ORTHO05D013700 1.0e-07 61.2 73 41.1
ATR0751G122 Amborella trichopoda HOM05D000026 ORTHO05D001292 1.7e-07 60.5 102 44.1
Migut.H01754 Erythranthe guttata HOM05D000026 ORTHO05D001292 1.7e-07 60.5 99 43.4
Sc03g0011430 Simmondsia chinensis HOM05D000026 ORTHO05D001292 1.7e-07 60.5 103 40.8
SEGI_12259 Sequoiadendron giganteum HOM05D000026 ORTHO05D001292 2.3e-07 60.1 105 39.0
Ah.04g166600 Amaranthus hybridus HOM05D000026 ORTHO05D001292 2.9e-07 59.7 128 36.7
PSO349G0228 Papaver somniferum HOM05D000026 ORTHO05D001292 2.9e-07 59.7 101 40.6
Sc03g0011340 Simmondsia chinensis HOM05D000026 ORTHO05D001292 2.9e-07 59.7 103 39.8
Cpa.g.sc12.115 Carica papaya HOM05D000026 ORTHO05D001292 3.8e-07 59.3 103 37.9
Lj1P890T26 Lonicera japonica HOM05D000026 ORTHO05D001292 6.6e-07 58.5 131 40.5
SalBow7G2077 Salvia bowleyana HOM05D000026 ORTHO05D001292 8.6e-07 58.2 75 40.0
SalBow7G4703 Salvia bowleyana HOM05D000026 ORTHO05D001292 8.6e-07 58.2 75 40.0
AUR62026756 Chenopodium quinoa HOM05D000026 ORTHO05D001292 1.1e-06 57.8 75 38.7
HanXRQChr03g0074001 Helianthus annuus HOM05D000026 ORTHO05D001292 1.1e-06 57.8 101 39.6
Rhsim04G0012400 Rhododendron simsii HOM05D000026 ORTHO05D001292 1.1e-06 57.8 106 43.4
CiPaw.11G204400 Carya illinoinensis HOM05D000026 ORTHO05D001292 1.5e-06 57.4 112 39.3
Lsat_1_v5_gn_9_88680 Lactuca sativa HOM05D000026 ORTHO05D001292 2.5e-06 56.6 103 39.8
CSS0030436 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D001292 3.3e-06 56.2 133 39.8
Carub.0008s1618 Capsella rubella HOM05D000026 ORTHO05D001292 3.3e-06 56.2 104 37.5
Oeu014363.1 Olea europaea HOM05D000026 ORTHO05D001292 3.3e-06 56.2 129 38.0
AL8G31390 Arabidopsis lyrata HOM05D000026 ORTHO05D001292 4.3e-06 55.8 104 37.5
Lj8C179G7 Lonicera japonica HOM05D000026 ORTHO05D001292 4.3e-06 55.8 129 36.4
PGR083G0263 Punica granatum HOM05D000026 ORTHO05D001292 4.3e-06 55.8 103 40.8
Actinidia35402 Actinidia chinensis HOM05D000026 ORTHO05D001292 5.6e-06 55.5 106 41.5
Oeu046936.1 Olea europaea HOM05D000026 ORTHO05D001292 5.6e-06 55.5 130 38.5
THA.LOC104817706 Tarenaya hassleriana HOM05D000026 ORTHO05D001292 5.6e-06 55.5 103 39.8
Zm00001eb236670 Zea mays HOM05D000026 ORTHO05D001292 5.6e-06 55.5 101 39.6
Aa31LG3G11730 Aethionema arabicum HOM05D000026 ORTHO05D001292 7.3e-06 55.1 103 37.9
EL10Ac1g01493 Beta vulgaris HOM05D000026 ORTHO05D001292 7.3e-06 55.1 77 37.7
ECA240G2228 Erigeron canadensis HOM05D000026 ORTHO05D001292 7.3e-06 55.1 135 37.8
Prupe.6G024000 Prunus persica HOM05D000026 ORTHO05D001292 7.3e-06 55.1 100 41.0
THA.LOC104806499 Tarenaya hassleriana HOM05D000026 ORTHO05D001292 7.3e-06 55.1 103 40.8
AT5G55830 Arabidopsis thaliana HOM05D000026 ORTHO05D001292 9.5e-06 54.7 104 36.5


User provided reference genes

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