Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7729 Trifolium pratense HOM05D001012 ORTHO05D004721 7.1e-27 123.2 65 100.0
TPR.G22240 Trifolium pratense HOM05D001012 ORTHO05D004721 1.9e-24 115.2 61 98.4
Medtr3g072390 Medicago truncatula HOM05D001012 ORTHO05D004721 8.4e-12 73.2 41 92.7
arahy.Tifrunner.gnm1.ann1.C03EZ9 Arachis hypogaea HOM05D001012 ORTHO05D004721 1.1e-11 72.8 41 90.2
arahy.Tifrunner.gnm1.ann1.QHVB9K Arachis hypogaea HOM05D001012 ORTHO05D004721 1.1e-11 72.8 41 90.2
TPR.G24051 Trifolium pratense HOM05D001012 ORTHO05D004721 2.5e-11 71.6 41 90.2
Glyma.06G112700 Glycine max HOM05D001012 ORTHO05D004721 9.3e-11 69.7 40 90.0
Solyc06g060360.3 Solanum lycopersicum HOM05D001012 ORTHO05D004721 9.3e-11 69.7 41 85.4
Sopen06g020500 Solanum pennellii HOM05D001012 ORTHO05D004721 9.3e-11 69.7 41 85.4
PGSC0003DMG400017558 Solanum tuberosum HOM05D001012 ORTHO05D004721 9.3e-11 69.7 41 85.4
Lalb_Chr17g0343781 Lupinus albus HOM05D001012 ORTHO05D004721 1.6e-10 68.9 62 62.9
CiPaw.05G222700 Carya illinoinensis HOM05D001012 ORTHO05D004721 2.7e-10 68.2 41 85.4
Lj1g0018062 Lotus japonicus HOM05D001012 ORTHO05D004721 2.7e-10 68.2 41 85.4
Peaxi162Scf00051g00088 Petunia axillaris HOM05D001012 ORTHO05D004721 2.7e-10 68.2 40 85.0
QL09p035232 Quercus lobata HOM05D001012 ORTHO05D004721 2.7e-10 68.2 41 82.9
Glyma.13G080500 Glycine max HOM05D001012 ORTHO05D004721 4.6e-10 67.4 61 63.9
COL.COLO4_35939 Corchorus olitorius HOM05D001012 ORTHO05D004721 6.1e-10 67.0 41 80.5
Actinidia02615 Actinidia chinensis HOM05D001012 ORTHO05D004721 7.9e-10 66.6 41 80.5
CANSAT25G1368 Cannabis sativa HOM05D001012 ORTHO05D004721 7.9e-10 66.6 41 82.9
Ciclev10002342m.g Citrus clementina HOM05D001012 ORTHO05D004721 7.9e-10 66.6 41 80.5
Cc00_g04270 Coffea canephora HOM05D001012 ORTHO05D004721 7.9e-10 66.6 38 89.5
Phvul.008G163500 Phaseolus vulgaris HOM05D001012 ORTHO05D004721 7.9e-10 66.6 41 85.4
PGR044G1962 Punica granatum HOM05D001012 ORTHO05D004721 7.9e-10 66.6 41 82.9
VMungo0647G1614 Vigna mungo HOM05D001012 ORTHO05D004721 7.9e-10 66.6 41 85.4
Atru.chr13.1443 Acer truncatum HOM05D001012 ORTHO05D004721 1.0e-09 66.2 41 80.5
Atru.chr13.1467 Acer truncatum HOM05D001012 ORTHO05D004721 1.0e-09 66.2 41 80.5
Haze_00447 Corylus avellana HOM05D001012 ORTHO05D004721 1.0e-09 66.2 41 80.5
Duzib116G0337 Durio zibethinus HOM05D001012 ORTHO05D004721 1.0e-09 66.2 41 80.5
Glyma.04G250100 Glycine max HOM05D001012 ORTHO05D004721 1.0e-09 66.2 40 85.0
Lj1g0008844 Lotus japonicus HOM05D001012 ORTHO05D004721 1.0e-09 66.2 41 82.9
Thecc.08G123900 Theobroma cacao HOM05D001012 ORTHO05D004721 1.0e-09 66.2 41 80.5
CAN.G1040.12 Capsicum annuum HOM05D001012 ORTHO05D004721 1.3e-09 65.9 38 86.8
Migut.C01137 Erythranthe guttata HOM05D001012 ORTHO05D004721 1.3e-09 65.9 41 78.0
Glyma.14G148800 Glycine max HOM05D001012 ORTHO05D004721 1.3e-09 65.9 41 82.9
DCAR_014091 Daucus carota HOM05D001012 ORTHO05D004721 1.8e-09 65.5 41 80.5
Lalb_Chr11g0065861 Lupinus albus HOM05D001012 ORTHO05D004721 1.8e-09 65.5 41 82.9
Aqoxy6G00201 Aquilegia oxysepala HOM05D001012 ORTHO05D004721 2.3e-09 65.1 41 78.0
CSS0029014 Camellia sinensis var. sinensis HOM05D001012 ORTHO05D004721 2.3e-09 65.1 41 80.5
Cfa016009 Carpinus fangiana HOM05D001012 ORTHO05D004721 2.3e-09 65.1 41 80.5
Hma1.2p1_0186F.1_g081740 Hydrangea macrophylla HOM05D001012 ORTHO05D004721 2.3e-09 65.1 39 84.6
vmacro12535 Vaccinium macrocarpon HOM05D001012 ORTHO05D004721 2.3e-09 65.1 37 89.2
MSTRG.25387 Avicennia marina HOM05D001012 ORTHO05D004721 3.0e-09 64.7 41 78.0
Potri.002G084600 Populus trichocarpa HOM05D001012 ORTHO05D004721 3.0e-09 64.7 53 64.2
TAR376G0631 Trochodendron aralioides HOM05D001012 ORTHO05D004721 3.0e-09 64.7 41 80.5
Phvul.009G124600 Phaseolus vulgaris HOM05D001012 ORTHO05D004721 3.9e-09 64.3 40 85.0
Psat5g132040 Pisum sativum HOM05D001012 ORTHO05D004721 3.9e-09 64.3 41 82.9
SGA_v2.0_scaffold28G12002 Striga asiatica HOM05D001012 ORTHO05D004721 3.9e-09 64.3 37 86.5
VMungo1309G2608 Vigna mungo HOM05D001012 ORTHO05D004721 3.9e-09 64.3 40 85.0
Actinidia23073 Actinidia chinensis HOM05D001012 ORTHO05D004721 5.1e-09 63.9 41 75.6
TAR628G0697 Trochodendron aralioides HOM05D001012 ORTHO05D004721 5.1e-09 63.9 41 78.0
Eucgr.F04356 Eucalyptus grandis HOM05D001012 ORTHO05D004721 6.7e-09 63.5 38 81.6
Lj4A623T14 Lonicera japonica HOM05D001012 ORTHO05D004721 6.7e-09 63.5 40 82.5
MD08G1165100 Malus domestica HOM05D001012 ORTHO05D004721 6.7e-09 63.5 41 78.0
MD15G1350900 Malus domestica HOM05D001012 ORTHO05D004721 6.7e-09 63.5 41 78.0
Rhsim06G0104500 Rhododendron simsii HOM05D001012 ORTHO05D004721 6.7e-09 63.5 37 83.8
SalBow6G4285 Salvia bowleyana HOM05D001012 ORTHO05D004721 6.7e-09 63.5 41 75.6
SalBow6G5549 Salvia bowleyana HOM05D001012 ORTHO05D004721 6.7e-09 63.5 41 75.6
THA.LOC104817291 Tarenaya hassleriana HOM05D001012 ORTHO05D004721 6.7e-09 63.5 41 78.0
Lalb_Chr10g0101771 Lupinus albus HOM05D001012 ORTHO05D004721 8.7e-09 63.2 61 59.0
MSTRG.1450 Avicennia marina HOM05D001012 ORTHO05D004721 1.1e-08 62.8 41 78.0
Potri.005G177100 Populus trichocarpa HOM05D001012 ORTHO05D004721 1.1e-08 62.8 53 64.2
Ah.05g170850 Amaranthus hybridus HOM05D001012 ORTHO05D004721 1.5e-08 62.4 37 83.8
CDE08G0101 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 1.5e-08 62.4 37 81.1
Duzib093G1741 Durio zibethinus HOM05D001012 ORTHO05D004721 1.5e-08 62.4 41 75.6
Gohir.A06G043900 Gossypium hirsutum HOM05D001012 ORTHO05D004721 1.5e-08 62.4 41 78.0
Gohir.D06G044800 Gossypium hirsutum HOM05D001012 ORTHO05D004721 1.5e-08 62.4 41 78.0
Gorai.010G049900 Gossypium raimondii HOM05D001012 ORTHO05D004721 1.5e-08 62.4 41 78.0
RcHm_v2.0_Chr6g0295651 Rosa chinensis HOM05D001012 ORTHO05D004721 1.5e-08 62.4 41 78.0
GSVIVG01008879001 Vitis vinifera HOM05D001012 ORTHO05D004721 1.5e-08 62.4 37 83.8
MSTRG.22411 Avicennia marina HOM05D001012 ORTHO05D004721 1.9e-08 62.0 37 83.8
Thhalv10011770m.g Eutrema salsugineum HOM05D001012 ORTHO05D004721 1.9e-08 62.0 41 75.6
FvH4_2g26790 Fragaria vesca HOM05D001012 ORTHO05D004721 1.9e-08 62.0 41 78.0
FAN20G2917 Fragaria x ananassa HOM05D001012 ORTHO05D004721 1.9e-08 62.0 41 78.0
FAN24G0070 Fragaria x ananassa HOM05D001012 ORTHO05D004721 1.9e-08 62.0 41 78.0
FAN27G2447 Fragaria x ananassa HOM05D001012 ORTHO05D004721 1.9e-08 62.0 41 78.0
SalBow7G2417 Salvia bowleyana HOM05D001012 ORTHO05D004721 1.9e-08 62.0 41 75.6
Aa31LG6G9310 Aethionema arabicum HOM05D001012 ORTHO05D004721 2.5e-08 61.6 41 75.6
Lj7A339T43 Lonicera japonica HOM05D001012 ORTHO05D004721 2.5e-08 61.6 37 81.1
Nn5g28255 Nelumbo nucifera HOM05D001012 ORTHO05D004721 2.5e-08 61.6 37 83.8
Sc01g0001170 Simmondsia chinensis HOM05D001012 ORTHO05D004721 2.5e-08 61.6 37 81.1
EL10Ac1g01053 Beta vulgaris HOM05D001012 ORTHO05D004721 3.3e-08 61.2 37 81.1
Cpa.g.sc36.57 Carica papaya HOM05D001012 ORTHO05D004721 3.3e-08 61.2 41 75.6
AUR62019046 Chenopodium quinoa HOM05D001012 ORTHO05D004721 3.3e-08 61.2 37 81.1
AUR62027886 Chenopodium quinoa HOM05D001012 ORTHO05D004721 3.3e-08 61.2 37 81.1
FAN15G0423 Fragaria x ananassa HOM05D001012 ORTHO05D004721 3.3e-08 61.2 40 80.0
unitig_747.g21492 Utricularia gibba HOM05D001012 ORTHO05D004721 3.3e-08 61.2 37 81.1
BcaB07g33932 Brassica carinata HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
BcaC08g42862 Brassica carinata HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
A10p07390 Brassica napus HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
C06p00720 Brassica napus HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
BolC6t35213H Brassica oleracea HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
BraSC36t46067Z Brassica rapa HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
Dinv07228 Davidia involucrata HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 78.0
Oeu047948.1 Olea europaea HOM05D001012 ORTHO05D004721 4.3e-08 60.8 37 81.1
Prupe.1G499800 Prunus persica HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 75.6
Sp1g33620 Schrenkiella parvula HOM05D001012 ORTHO05D004721 4.3e-08 60.8 41 73.2
Dinv27323 Davidia involucrata HOM05D001012 ORTHO05D004721 5.7e-08 60.5 37 83.8
SGA_v2.0_scaffold52G18973 Striga asiatica HOM05D001012 ORTHO05D004721 5.7e-08 60.5 41 75.6
TWI56G0260 Tripterygium wilfordii HOM05D001012 ORTHO05D004721 5.7e-08 60.5 37 75.7
BcaC07g37287 Brassica carinata HOM05D001012 ORTHO05D004721 7.4e-08 60.1 41 70.7
C08p07180 Brassica napus HOM05D001012 ORTHO05D004721 7.4e-08 60.1 41 70.7
Lalb_Chr04g0253411 Lupinus albus HOM05D001012 ORTHO05D004721 7.4e-08 60.1 38 81.6
Manes.18G076400 Manihot esculenta HOM05D001012 ORTHO05D004721 7.4e-08 60.1 37 78.4
Os01g0875300 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D004721 7.4e-08 60.1 39 76.9
AT1G44760 Arabidopsis thaliana HOM05D001012 ORTHO05D004721 9.7e-08 59.7 41 73.2
CARHR036010 Cardamine hirsuta HOM05D001012 ORTHO05D004721 9.7e-08 59.7 41 73.2
CiPaw.06G030300 Carya illinoinensis HOM05D001012 ORTHO05D004721 1.3e-07 59.3 41 75.6
CDE02G3226 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 1.3e-07 59.3 37 78.4
MELO3C010604.2 Cucumis melo HOM05D001012 ORTHO05D004721 1.3e-07 59.3 51 60.8
CsaV3_6G034520 Cucumis sativus L. HOM05D001012 ORTHO05D004721 1.3e-07 59.3 51 60.8
PSO170G4789 Papaver somniferum HOM05D001012 ORTHO05D004721 1.3e-07 59.3 38 73.7
PSO528G0066 Papaver somniferum HOM05D001012 ORTHO05D004721 1.3e-07 59.3 38 73.7
Hund27022 Selenicereus undatus HOM05D001012 ORTHO05D004721 1.3e-07 59.3 37 75.7
Zm00001eb348850 Zea mays HOM05D001012 ORTHO05D004721 1.3e-07 59.3 39 74.4
A08p06350 Brassica napus HOM05D001012 ORTHO05D004721 1.6e-07 58.9 41 68.3
BraA08t32643Z Brassica rapa HOM05D001012 ORTHO05D004721 1.6e-07 58.9 41 68.3
AL1G52420 Arabidopsis lyrata HOM05D001012 ORTHO05D004721 2.8e-07 58.2 35 82.9
Carub.0001s3528 Capsella rubella HOM05D001012 ORTHO05D004721 2.8e-07 58.2 41 70.7
CDE08G0591 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 2.8e-07 58.2 37 75.7
Duzib041G0256 Durio zibethinus HOM05D001012 ORTHO05D004721 2.8e-07 58.2 61 55.7
Sed0016510 Sechium edule HOM05D001012 ORTHO05D004721 2.8e-07 58.2 59 55.9
CDE08G0999 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 3.7e-07 57.8 37 70.3
ClCG11G015690 Citrullus lanatus HOM05D001012 ORTHO05D004721 3.7e-07 57.8 39 74.4
CsaV3_4G028320 Cucumis sativus L. HOM05D001012 ORTHO05D004721 3.7e-07 57.8 39 74.4
DCAR_017422 Daucus carota HOM05D001012 ORTHO05D004721 3.7e-07 57.8 41 70.7
Lalb_Chr20g0114621 Lupinus albus HOM05D001012 ORTHO05D004721 4.8e-07 57.4 40 77.5
CDE06G0137 Ceratophyllum demersum HOM05D001012 ORTHO05D004721 6.3e-07 57.0 37 70.3
Manes.02G162500 Manihot esculenta HOM05D001012 ORTHO05D004721 6.3e-07 57.0 41 68.3
Zm00001eb366440 Zea mays HOM05D001012 ORTHO05D004721 6.3e-07 57.0 37 75.7
Migut.N03286 Erythranthe guttata HOM05D001012 ORTHO05D004721 8.2e-07 56.6 39 79.5
Zm00001eb288570 Zea mays HOM05D001012 ORTHO05D004721 8.2e-07 56.6 39 71.8
ATR1134G024 Amborella trichopoda HOM05D001012 ORTHO05D004721 1.1e-06 56.2 37 73.0
MELO3C010473.2 Cucumis melo HOM05D001012 ORTHO05D004721 1.1e-06 56.2 39 69.2
Os05g0428400 Oryza sativa ssp. japonica HOM05D001012 ORTHO05D004721 1.1e-06 56.2 39 71.8
Hund16856 Selenicereus undatus HOM05D001012 ORTHO05D004721 1.1e-06 56.2 35 77.1
ClCG08G005620 Citrullus lanatus HOM05D001012 ORTHO05D004721 1.8e-06 55.5 37 64.9
unitig_46.g18126 Utricularia gibba HOM05D001012 ORTHO05D004721 3.1e-06 54.7 39 66.7
MSTRG.24168 Avicennia marina HOM05D001012 ORTHO05D004721 4.1e-06 54.3 35 77.1
Nitab4.5_0000633g0210 Nicotiana tabacum HOM05D001012 ORTHO05D004721 4.1e-06 54.3 32 81.2
Sed0010314 Sechium edule HOM05D001012 ORTHO05D004721 4.1e-06 54.3 37 75.7
Zm00001eb146130 Zea mays HOM05D001012 ORTHO05D004721 4.1e-06 54.3 37 73.0
BcaB04g17586 Brassica carinata HOM05D001012 ORTHO05D004721 5.3e-06 53.9 41 65.9
HanXRQChr04g0125221 Helianthus annuus HOM05D001012 ORTHO05D004721 5.3e-06 53.9 38 78.9
HPP92_011932 Vanilla planifolia HOM05D001012 ORTHO05D004721 5.3e-06 53.9 39 64.1
unitig_0.g2118 Utricularia gibba HOM05D001012 ORTHO05D004721 6.9e-06 53.5 40 75.0
HPP92_013747 Vanilla planifolia HOM05D001012 ORTHO05D004721 9.0e-06 53.1 39 61.5


User provided reference genes

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