Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7711 Trifolium pratense HOM05D026687 ORTHO05D016918 3.4e-50 201.4 109 100.0
TPR.G35212 Trifolium pratense HOM05D026687 ORTHO05D016918 1.0e-38 163.3 99 89.9
TPR.G18119 Trifolium pratense HOM05D026687 ORTHO05D016918 5.2e-38 161.0 96 90.6
TPR.G35214 Trifolium pratense HOM05D026687 ORTHO05D016918 1.1e-35 153.3 99 87.9
TPR.G11499 Trifolium pratense HOM05D000032 ORTHO05D006669 3.4e-29 131.7 100 81.0
Medtr2g041140 Medicago truncatula HOM05D000032 ORTHO05D006669 2.3e-22 109.0 100 68.0
Ca_14808_v3 Cicer arietinum L. HOM05D000032 ORTHO05D006669 5.4e-19 97.8 105 67.6
Medtr3g049990 Medicago truncatula HOM05D000032 ORTHO05D006669 5.4e-19 97.8 70 81.4
VMungo0540G0072 Vigna mungo HOM05D000032 ORTHO05D006669 1.9e-16 89.4 103 64.1
Phvul.006G039100 Phaseolus vulgaris HOM05D000032 ORTHO05D006669 1.2e-15 86.7 103 62.1
Psat5g176240 Pisum sativum HOM05D000032 ORTHO05D006669 1.0e-14 83.6 72 75.0
Lj6g0002233 Lotus japonicus HOM05D000032 ORTHO05D006669 1.8e-14 82.8 104 58.7
Glyma.18G101600 Glycine max HOM05D000032 ORTHO05D006669 4.0e-14 81.6 103 56.3
Lalb_Chr20g0113951 Lupinus albus HOM05D000032 ORTHO05D006669 1.5e-13 79.7 102 58.8
Haze_22652 Corylus avellana HOM05D000032 ORTHO05D006669 4.4e-13 78.2 93 57.0
Thecc.08G046400 Theobroma cacao HOM05D000032 ORTHO05D006669 9.8e-13 77.0 94 55.3
Ciclev10000409m.g Citrus clementina HOM05D000032 ORTHO05D006669 1.3e-12 76.6 95 55.8
Eucgr.A00214 Eucalyptus grandis HOM05D000032 ORTHO05D006669 2.2e-12 75.9 95 49.5
Peaxi162Scf00553g00813 Petunia axillaris HOM05D000032 ORTHO05D006669 2.2e-12 75.9 105 52.4
Potri.005G241300 Populus trichocarpa HOM05D000032 ORTHO05D006669 8.3e-12 73.9 95 50.5
Duzib093G1385 Durio zibethinus HOM05D000032 ORTHO05D006669 1.1e-11 73.6 94 54.3
Glyma.08G313100 Glycine max HOM05D000032 ORTHO05D006669 1.1e-11 73.6 101 54.5
Gorai.009G193900 Gossypium raimondii HOM05D000032 ORTHO05D006669 1.1e-11 73.6 94 53.2
Atru.chr13.268 Acer truncatum HOM05D000032 ORTHO05D006669 1.4e-11 73.2 99 52.5
Potri.002G020101 Populus trichocarpa HOM05D000032 ORTHO05D016918 1.4e-11 73.2 91 51.6
TWI36G0775 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 1.4e-11 73.2 96 57.3
Lj6g0027027 Lotus japonicus HOM05D000032 ORTHO05D006669 3.2e-11 72.0 104 53.8
QL02p011979 Quercus lobata HOM05D000032 ORTHO05D006669 3.2e-11 72.0 95 53.7
Atru.chr11.1620 Acer truncatum HOM05D000032 ORTHO05D006669 5.4e-11 71.2 95 53.7
FvH4_2g38260 Fragaria vesca HOM05D000032 ORTHO05D006669 1.2e-10 70.1 95 54.7
Gohir.D05G188600 Gossypium hirsutum HOM05D000032 ORTHO05D006669 1.6e-10 69.7 94 51.1
CiPaw.07G148200 Carya illinoinensis HOM05D000032 ORTHO05D006669 4.6e-10 68.2 96 53.1
Gohir.A05G185800 Gossypium hirsutum HOM05D000032 ORTHO05D006669 7.8e-10 67.4 94 51.1
COL.COLO4_26129 Corchorus olitorius HOM05D000032 ORTHO05D006669 1.0e-09 67.0 95 50.5
RcHm_v2.0_Chr6g0303111 Rosa chinensis HOM05D000032 ORTHO05D006669 1.0e-09 67.0 105 48.6
arahy.Tifrunner.gnm1.ann1.CZI2M2 Arachis hypogaea HOM05D000032 ORTHO05D006669 1.3e-09 66.6 67 59.7
arahy.Tifrunner.gnm1.ann1.KG3JNQ Arachis hypogaea HOM05D000032 ORTHO05D006669 1.3e-09 66.6 67 59.7
TWI56G0435 Tripterygium wilfordii HOM05D000032 ORTHO05D006669 1.7e-09 66.2 96 51.0
Dinv15073 Davidia involucrata HOM05D000032 ORTHO05D006669 2.3e-09 65.9 94 50.0
CSS0021497 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 3.0e-09 65.5 95 46.3
CSS0023183 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D006669 3.0e-09 65.5 95 46.3
QL12p004290 Quercus lobata HOM05D000032 ORTHO05D006669 3.0e-09 65.5 95 51.6
TPR.G35215 Trifolium pratense HOM05D001217 ORTHO05D016918 3.9e-09 65.1 58 72.4
Dinv39530 Davidia involucrata HOM05D000032 ORTHO05D006669 5.0e-09 64.7 94 50.0
FAN27G2308 Fragaria x ananassa HOM05D000032 ORTHO05D006669 5.0e-09 64.7 95 51.6
Lj1C1148G8 Lonicera japonica HOM05D000032 ORTHO05D006669 1.1e-08 63.5 94 51.1
TPR.G35954 Trifolium pratense HOM05D000230 ORTHO05D016918 1.1e-08 63.5 39 84.6
Migut.C00853 Erythranthe guttata HOM05D000032 ORTHO05D006669 1.5e-08 63.2 94 50.0
MELO3C003842.2 Cucumis melo HOM05D000032 ORTHO05D006669 2.5e-08 62.4 95 50.5
CsaV3_3G045070 Cucumis sativus L. HOM05D000032 ORTHO05D006669 2.5e-08 62.4 95 50.5
Cpa.g.sc29.166 Carica papaya HOM05D000032 ORTHO05D006669 4.3e-08 61.6 95 46.3
Cc00_g14370 Coffea canephora HOM05D000032 ORTHO05D006669 7.3e-08 60.8 95 51.6
SGA_v2.0_scaffold92G28212 Striga asiatica HOM05D000032 ORTHO05D006669 9.5e-08 60.5 97 47.4
Cc10_g01510 Coffea canephora HOM05D000032 ORTHO05D016918 1.6e-07 59.7 95 50.5
Lsat_1_v5_gn_8_10200 Lactuca sativa HOM05D000032 ORTHO05D006669 2.8e-07 58.9 100 45.0
Nn5g30744 Nelumbo nucifera HOM05D000032 ORTHO05D006669 3.6e-07 58.5 95 46.3
Prupe.1G363600 Prunus persica HOM05D000032 ORTHO05D006669 8.0e-07 57.4 70 51.4
Sopen04g035190 Solanum pennellii HOM05D000032 ORTHO05D006669 1.1e-06 57.0 105 44.8
ClCG09G010550 Citrullus lanatus HOM05D000032 ORTHO05D006669 1.4e-06 56.6 95 48.4
PGR042G0181 Punica granatum HOM05D000032 ORTHO05D006669 1.4e-06 56.6 95 46.3
Oeu007360.3 Olea europaea HOM05D000032 ORTHO05D006669 2.3e-06 55.8 104 45.2
Sabra05G0186800 Salix brachista HOM05D000032 ORTHO05D006669 4.0e-06 55.1 69 49.3
arahy.Tifrunner.gnm1.ann1.B7U3FX Arachis hypogaea HOM05D002394 ORTHO05D002508 5.2e-06 54.7 62 54.8


User provided reference genes

Program Settings