Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7683 Trifolium pratense HOM05D007683 ORTHO05D009703 4.0e-81 304.7 150 100.0
Medtr5g067740 Medicago truncatula HOM05D007683 ORTHO05D009703 2.5e-51 205.7 148 73.6
Psat2g062760 Pisum sativum HOM05D007683 ORTHO05D009703 8.4e-39 164.1 157 63.1
LjContig00408g0002016 Lotus japonicus HOM05D007683 ORTHO05D009703 2.5e-35 152.5 156 56.4
Glyma.14G186400 Glycine max HOM05D007683 ORTHO05D009703 1.2e-32 143.7 161 51.6
Phvul.008G186200 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 4.5e-32 141.7 99 67.7
Glyma.06G141600 Glycine max HOM05D007683 ORTHO05D009703 1.0e-28 130.6 103 63.1
Glyma.02G219100 Glycine max HOM05D007683 ORTHO05D009703 1.9e-27 126.3 103 67.0
Phvul.009G042800 Phaseolus vulgaris HOM05D007683 ORTHO05D009703 7.6e-24 114.4 98 60.2
VMungo1309G1531 Vigna mungo HOM05D007683 ORTHO05D009703 7.6e-24 114.4 133 48.1
FAN03G1207 Fragaria x ananassa HOM05D007683 ORTHO05D009703 1.1e-22 110.5 100 61.0
FvH4_7g26070 Fragaria vesca HOM05D007683 ORTHO05D009703 1.4e-22 110.2 104 59.6
FAN01G0748 Fragaria x ananassa HOM05D007683 ORTHO05D009703 2.5e-22 109.4 104 58.7
Lalb_Chr11g0067711 Lupinus albus HOM05D007683 ORTHO05D009703 3.2e-22 109.0 145 49.0
VMungo0647G1507 Vigna mungo HOM05D007683 ORTHO05D009703 7.9e-21 104.4 74 67.6
Cfa001197 Carpinus fangiana HOM05D007683 ORTHO05D009703 3.9e-20 102.1 92 58.7
Haze_17368 Corylus avellana HOM05D007683 ORTHO05D009703 6.7e-20 101.3 99 57.6
RcHm_v2.0_Chr1g0372481 Rosa chinensis HOM05D007683 ORTHO05D009703 6.7e-20 101.3 101 56.4
Peaxi162Scf00073g10232 Petunia axillaris HOM05D007683 ORTHO05D009703 1.1e-19 100.5 132 49.2
Manes.10G003157 Manihot esculenta HOM05D007683 ORTHO05D009703 1.5e-19 100.1 129 49.6
Cpa.g.sc19.42 Carica papaya HOM05D007683 ORTHO05D009703 3.3e-19 99.0 103 54.4
Lj1g0018746 Lotus japonicus HOM05D007683 ORTHO05D009703 3.3e-19 99.0 95 55.8
Ciclev10033031m.g Citrus clementina HOM05D007683 ORTHO05D009703 5.7e-19 98.2 102 58.8
Prupe.2G265400 Prunus persica HOM05D007683 ORTHO05D009703 1.3e-18 97.1 103 55.3
Gohir.D10G184400 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.2e-18 96.3 84 63.1
Gorai.011G206600 Gossypium raimondii HOM05D007683 ORTHO05D009703 2.2e-18 96.3 84 63.1
QL08p065063 Quercus lobata HOM05D007683 ORTHO05D009703 2.2e-18 96.3 103 52.4
MD01G1169200 Malus domestica HOM05D007683 ORTHO05D009703 2.8e-18 95.9 85 64.7
Thecc.10G184800 Theobroma cacao HOM05D007683 ORTHO05D009703 3.7e-18 95.5 101 56.4
Gohir.A10G177800 Gossypium hirsutum HOM05D007683 ORTHO05D009703 4.8e-18 95.1 100 54.0
Cc02_g05230 Coffea canephora HOM05D007683 ORTHO05D009703 6.3e-18 94.7 89 56.2
COL.COLO4_19470 Corchorus olitorius HOM05D007683 ORTHO05D009703 8.2e-18 94.4 100 58.0
CANSAT56G2075 Cannabis sativa HOM05D007683 ORTHO05D009703 1.4e-17 93.6 147 43.5
MSTRG.8877 Avicennia marina HOM05D007683 ORTHO05D009703 1.8e-17 93.2 89 57.3
TWI09G1439 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 1.8e-17 93.2 138 44.2
TWI73G0272 Tripterygium wilfordii HOM05D007683 ORTHO05D009703 4.1e-17 92.0 96 54.2
DCAR_014661 Daucus carota HOM05D007683 ORTHO05D009703 5.3e-17 91.7 93 53.8
Dinv21856 Davidia involucrata HOM05D004933 ORTHO05D005465 9.0e-17 90.9 82 59.8
MD07G1235100 Malus domestica HOM05D007683 ORTHO05D009703 9.0e-17 90.9 92 55.4
THA.LOC104823170 Tarenaya hassleriana HOM05D007683 ORTHO05D009703 9.0e-17 90.9 56 78.6
Hma1.2p1_0264F.1_g105970 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 1.2e-16 90.5 86 55.8
Lj6g0012778 Lotus japonicus HOM05D007683 ORTHO05D009703 2.0e-16 89.7 92 53.3
Duzib106G0215 Durio zibethinus HOM05D007683 ORTHO05D009703 2.6e-16 89.4 83 56.6
Gorai.010G219400 Gossypium raimondii HOM05D007683 ORTHO05D009703 4.5e-16 88.6 108 48.1
Oeu008103.1 Olea europaea HOM05D007683 ORTHO05D009703 7.6e-16 87.8 130 43.1
Eucgr.J00104 Eucalyptus grandis HOM05D007683 ORTHO05D009703 1.0e-15 87.4 105 49.5
Rhsim03G0153400 Rhododendron simsii HOM05D007683 ORTHO05D009703 1.0e-15 87.4 104 50.0
SGA_v2.0_scaffold60G20879 Striga asiatica HOM05D007683 ORTHO05D009703 1.0e-15 87.4 93 53.8
PGSC0003DMG400020609 Solanum tuberosum HOM05D007683 ORTHO05D009703 1.7e-15 86.7 77 59.7
Gohir.D06G187100 Gossypium hirsutum HOM05D007683 ORTHO05D009703 2.2e-15 86.3 94 52.1
Nitab4.5_0006356g0030 Nicotiana tabacum HOM05D007683 ORTHO05D009703 2.2e-15 86.3 63 65.1
Potri.013G090200 Populus trichocarpa HOM05D007683 ORTHO05D009703 2.2e-15 86.3 103 48.5
Solyc03g095700.1 Solanum lycopersicum HOM05D007683 ORTHO05D009703 3.8e-15 85.5 85 57.6
PGR044G1007 Punica granatum HOM05D007683 ORTHO05D009703 5.0e-15 85.1 86 53.5
Atru.chr12.196 Acer truncatum HOM05D007683 ORTHO05D009703 8.5e-15 84.3 67 65.7
Nitab4.5_0000171g0240 Nicotiana tabacum HOM05D007683 ORTHO05D009703 8.5e-15 84.3 71 60.6
Sabra13G0070100 Salix brachista HOM05D007683 ORTHO05D009703 1.4e-14 83.6 92 52.2
Sed0023040 Sechium edule HOM05D007683 ORTHO05D009703 1.9e-14 83.2 91 56.0
Ah.12g064430 Amaranthus hybridus HOM05D007683 ORTHO05D009703 3.2e-14 82.4 87 52.9
Sopen03g025620 Solanum pennellii HOM05D007683 ORTHO05D009703 7.2e-14 81.3 84 54.8
BolC9t59911H Brassica oleracea HOM05D007683 ORTHO05D009703 9.3e-14 80.9 124 40.3
Gohir.A06G180150 Gossypium hirsutum HOM05D007683 ORTHO05D009703 9.3e-14 80.9 94 45.7
ClCG07G005260 Citrullus lanatus HOM05D007683 ORTHO05D009703 1.6e-13 80.1 86 50.0
TAR633G1265 Trochodendron aralioides HOM05D007683 ORTHO05D009703 1.6e-13 80.1 119 43.7
MELO3C020169.2 Cucumis melo HOM05D007683 ORTHO05D009703 4.6e-13 78.6 68 61.8
C09p71480 Brassica napus HOM05D007683 ORTHO05D009703 1.0e-12 77.4 103 43.7
Sed0015955 Sechium edule HOM05D007683 ORTHO05D009703 1.0e-12 77.4 84 57.1
A10p30970 Brassica napus HOM05D007683 ORTHO05D009703 1.4e-12 77.0 112 42.9
BraA10t45142Z Brassica rapa HOM05D007683 ORTHO05D009703 1.4e-12 77.0 112 42.9
CsaV3_5G011110 Cucumis sativus L. HOM05D007683 ORTHO05D009703 1.4e-12 77.0 124 41.1
Aa31LG11G6070 Aethionema arabicum HOM05D007683 ORTHO05D009703 1.8e-12 76.6 74 54.1
Sp6g37610 Schrenkiella parvula HOM05D007683 ORTHO05D009703 1.8e-12 76.6 88 50.0
CARHR208020 Cardamine hirsuta HOM05D007683 ORTHO05D009703 2.3e-12 76.3 77 57.1
Thhalv10014989m.g Eutrema salsugineum HOM05D007683 ORTHO05D009703 2.3e-12 76.3 114 43.9
AL6G15060 Arabidopsis lyrata HOM05D007683 ORTHO05D009703 3.9e-12 75.5 90 50.0
BcaB05g21726 Brassica carinata HOM05D007683 ORTHO05D009703 3.9e-12 75.5 80 55.0
BcaC06g32231 Brassica carinata HOM05D007683 ORTHO05D009703 3.9e-12 75.5 65 58.5
Nn2g10270 Nelumbo nucifera HOM05D007683 ORTHO05D009703 3.9e-12 75.5 65 58.5
Carub.0006s0415 Capsella rubella HOM05D007683 ORTHO05D009703 5.1e-12 75.1 90 48.9
Hma1.2p1_1805F.1_g303190 Hydrangea macrophylla HOM05D007683 ORTHO05D009703 5.1e-12 75.1 51 68.6
Ah.11g042460 Amaranthus hybridus HOM05D007683 ORTHO05D009703 1.9e-11 73.2 91 45.1
AT5G05220 Arabidopsis thaliana HOM05D007683 ORTHO05D009703 2.5e-11 72.8 92 46.7
Migut.F00568 Erythranthe guttata HOM05D007683 ORTHO05D009703 9.7e-11 70.9 52 63.5
ATR1127G105 Amborella trichopoda HOM05D007683 ORTHO05D009703 4.1e-09 65.5 95 41.1
Lsat_1_v5_gn_2_126821 Lactuca sativa HOM05D007683 ORTHO05D009703 3.4e-08 62.4 77 45.5
MBI15_g36064_MAGBIO Magnolia biondii HOM05D007683 ORTHO05D009703 3.4e-08 62.4 50 60.0
CDE07G1521 Ceratophyllum demersum HOM05D006969 ORTHO05D008826 3.8e-07 58.9 53 54.7
ECA238G0799 Erigeron canadensis HOM05D007683 ORTHO05D009703 8.5e-07 57.8 102 41.2
Zm00001eb015980 Zea mays HOM05D007683 ORTHO05D009703 4.2e-06 55.5 68 47.1
HanXRQChr14g0460581 Helianthus annuus HOM05D007683 ORTHO05D009703 5.5e-06 55.1 86 41.9
C02p02220 Brassica napus HOM05D007683 ORTHO05D009703 7.2e-06 54.7 30 83.3


User provided reference genes

Program Settings