Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7670 Trifolium pratense HOM05D000442 ORTHO05D001242 6.5e-23 109.8 52 100.0
TPR.G15697 Trifolium pratense HOM05D000442 ORTHO05D001242 3.2e-22 107.5 52 96.2
Medtr4g008080 Medicago truncatula HOM05D000442 ORTHO05D001242 1.0e-20 102.4 52 90.4
Psat7g260840 Pisum sativum HOM05D000442 ORTHO05D001242 1.2e-19 99.0 52 90.4
Ca_20500_v3 Cicer arietinum L. HOM05D000442 ORTHO05D001242 1.3e-18 95.5 52 84.6
VMungo0647G2540 Vigna mungo HOM05D000442 ORTHO05D001242 5.3e-17 90.1 51 84.3
Phvul.008G254500 Phaseolus vulgaris HOM05D000442 ORTHO05D001242 9.1e-17 89.4 51 84.3
Glyma.08G221700 Glycine max HOM05D000442 ORTHO05D001242 5.9e-16 86.7 51 84.3
Lj3g0002597 Lotus japonicus HOM05D000442 ORTHO05D001242 5.9e-16 86.7 51 76.5
Glyma.07G020300 Glycine max HOM05D000442 ORTHO05D001242 2.2e-15 84.7 52 78.8
arahy.Tifrunner.gnm1.ann1.FB1AMA Arachis hypogaea HOM05D000442 ORTHO05D001242 1.1e-14 82.4 50 76.0
arahy.Tifrunner.gnm1.ann1.YXGI3Q Arachis hypogaea HOM05D000442 ORTHO05D001242 1.1e-14 82.4 50 76.0
GSVIVG01029591001 Vitis vinifera HOM05D000442 ORTHO05D001242 5.5e-14 80.1 52 80.8
Nn2g12779 Nelumbo nucifera HOM05D000442 ORTHO05D001242 2.1e-13 78.2 52 75.0
PSO017G6551 Papaver somniferum HOM05D000442 ORTHO05D001242 2.7e-13 77.8 52 76.9
EL10Ac7g18177 Beta vulgaris HOM05D000442 ORTHO05D001242 3.6e-13 77.4 52 73.1
PGSC0003DMG400037251 Solanum tuberosum HOM05D000442 ORTHO05D001242 3.6e-13 77.4 52 73.1
PSO170G0911 Papaver somniferum HOM05D000442 ORTHO05D001242 1.0e-12 75.9 52 75.0
Solyc12g055780.3 Solanum lycopersicum HOM05D000442 ORTHO05D001242 1.4e-12 75.5 52 73.1
Sopen12g024250 Solanum pennellii HOM05D000442 ORTHO05D001242 1.4e-12 75.5 52 73.1
HanXRQChr10g0311441 Helianthus annuus HOM05D000442 ORTHO05D001242 3.0e-12 74.3 52 71.2
ClCG09G001610 Citrullus lanatus HOM05D000442 ORTHO05D001242 8.8e-12 72.8 52 69.2
Nitab4.5_0007548g0040 Nicotiana tabacum HOM05D000442 ORTHO05D001242 8.8e-12 72.8 52 71.2
AUR62025649 Chenopodium quinoa HOM05D000442 ORTHO05D001242 1.2e-11 72.4 52 71.2
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.2e-11 72.4 52 71.2
Hund18604 Selenicereus undatus HOM05D000442 ORTHO05D001242 1.2e-11 72.4 52 69.2
CANSAT01G2222 Cannabis sativa HOM05D000442 ORTHO05D001242 1.5e-11 72.0 52 73.1
CAN.G2835.2 Capsicum annuum HOM05D000442 ORTHO05D001242 1.5e-11 72.0 52 69.2
Lsat_1_v5_gn_5_137340 Lactuca sativa HOM05D000442 ORTHO05D001242 1.5e-11 72.0 52 69.2
Ah.08g217710 Amaranthus hybridus HOM05D000442 ORTHO05D001242 4.4e-11 70.5 52 67.3
CsaV3_7G033730 Cucumis sativus L. HOM05D000442 ORTHO05D001242 4.4e-11 70.5 52 67.3
Actinidia21875 Actinidia chinensis HOM05D000979 ORTHO05D001811 5.7e-11 70.1 51 72.5
MELO3C024286.2 Cucumis melo HOM05D000442 ORTHO05D001242 9.8e-11 69.3 52 65.4
Nitab4.5_0000357g0260 Nicotiana tabacum HOM05D000442 ORTHO05D001242 9.8e-11 69.3 41 78.0
Sed0018654 Sechium edule HOM05D000442 ORTHO05D001242 9.8e-11 69.3 52 65.4
AUR62001355 Chenopodium quinoa HOM05D000442 ORTHO05D001242 2.2e-10 68.2 50 72.0
CSS0031591 Camellia sinensis var. sinensis HOM05D000442 ORTHO05D001242 2.8e-10 67.8 52 67.3
CSS0044729 Camellia sinensis var. sinensis HOM05D000442 ORTHO05D001242 2.8e-10 67.8 52 67.3
MBI16_g30548_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D001242 2.8e-10 67.8 52 69.2
Prupe.3G020000 Prunus persica HOM05D000442 ORTHO05D001242 2.8e-10 67.8 52 67.3
ATR0580G211 Amborella trichopoda HOM05D000442 ORTHO05D001242 3.7e-10 67.4 52 67.3
MD09G1161100 Malus domestica HOM05D000442 ORTHO05D001242 4.8e-10 67.0 52 67.3
QL05p083794 Quercus lobata HOM05D000442 ORTHO05D001242 4.8e-10 67.0 39 82.1
CiPaw.01G089200 Carya illinoinensis HOM05D000442 ORTHO05D001242 1.4e-09 65.5 51 68.6
ATR0582G140 Amborella trichopoda HOM05D000442 ORTHO05D001242 3.1e-09 64.3 52 61.5
FvH4_6g37150 Fragaria vesca HOM05D000442 ORTHO05D001242 4.1e-09 63.9 52 65.4
FAN09G1872 Fragaria x ananassa HOM05D000979 ORTHO05D001811 5.4e-09 63.5 52 63.5
Lj9C541T22 Lonicera japonica HOM05D000442 ORTHO05D001242 5.4e-09 63.5 54 59.3
RcHm_v2.0_Chr2g0149721 Rosa chinensis HOM05D000442 ORTHO05D001242 9.1e-09 62.8 52 61.5
Aqoxy6G00831 Aquilegia oxysepala HOM05D000442 ORTHO05D001242 1.2e-08 62.4 52 59.6
Lalb_Chr25g0278671 Lupinus albus HOM05D000442 ORTHO05D001242 1.6e-08 62.0 40 67.5
MBI16_g30321_MAGBIO Magnolia biondii HOM05D000442 ORTHO05D001242 1.6e-08 62.0 52 55.8
vmacro18753 Vaccinium macrocarpon HOM05D000442 ORTHO05D001242 1.6e-08 62.0 52 63.5
Cpa.g.sc155.29 Carica papaya HOM05D000442 ORTHO05D001242 2.0e-08 61.6 52 59.6
TAR376G1230 Trochodendron aralioides HOM05D000442 ORTHO05D001242 2.7e-08 61.2 52 55.8
ATR0582G159 Amborella trichopoda HOM05D000442 ORTHO05D001242 3.5e-08 60.8 51 62.7
Actinidia21645 Actinidia chinensis HOM05D000442 ORTHO05D001242 4.5e-08 60.5 44 72.7
FAN02G2303 Fragaria x ananassa HOM05D000979 ORTHO05D001811 4.5e-08 60.5 52 59.6
Ciclev10027864m.g Citrus clementina HOM05D000442 ORTHO05D001242 1.3e-07 58.9 51 54.9
Atru.chr6.1282 Acer truncatum HOM05D000442 ORTHO05D001242 1.7e-07 58.5 51 52.9
MSTRG.23384 Avicennia marina HOM05D000442 ORTHO05D001242 1.7e-07 58.5 42 61.9
TAR381G0632 Trochodendron aralioides HOM05D000442 ORTHO05D001242 1.7e-07 58.5 52 53.8
Os09g0498600 Oryza sativa ssp. japonica HOM05D000442 ORTHO05D001242 2.2e-07 58.2 54 59.3
Oeu046981.1 Olea europaea HOM05D000442 ORTHO05D001979 2.9e-07 57.8 52 55.8
SEGI_09033 Sequoiadendron giganteum HOM05D000442 ORTHO05D001979 2.9e-07 57.8 51 54.9
AagrBONN_evm.TU.Sc2ySwM_368.188 Anthoceros agrestis HOM05D000442 ORTHO05D001979 3.8e-07 57.4 51 52.9
Pp3c14_13560 Physcomitrium patens HOM05D000442 ORTHO05D001979 3.8e-07 57.4 51 54.9
PSO541G0350 Papaver somniferum HOM05D000442 ORTHO05D001242 5.0e-07 57.0 52 51.9
PSO675G1336 Papaver somniferum HOM05D000442 ORTHO05D001242 5.0e-07 57.0 52 51.9
Mapoly0022s0041 Marchantia polymorpha HOM05D000442 ORTHO05D007032 6.5e-07 56.6 51 51.0
vmacro01865 Vaccinium macrocarpon HOM05D000442 ORTHO05D001242 8.5e-07 56.2 51 52.9
QL11p025374 Quercus lobata HOM05D000442 ORTHO05D001242 1.1e-06 55.8 51 52.9
SEGI_12697 Sequoiadendron giganteum HOM05D000442 ORTHO05D001979 1.1e-06 55.8 40 57.5
Hma1.2p1_1093F.1_g256300 Hydrangea macrophylla HOM05D000442 ORTHO05D001242 1.5e-06 55.5 52 50.0
Zm00001eb392120 Zea mays HOM05D000442 ORTHO05D001979 1.5e-06 55.5 51 54.9
Cfa007929 Carpinus fangiana HOM05D000442 ORTHO05D001979 1.9e-06 55.1 51 49.0
PSO017G3244 Papaver somniferum HOM05D000442 ORTHO05D001979 1.9e-06 55.1 51 51.0
PSO478G3051 Papaver somniferum HOM05D000442 ORTHO05D001979 1.9e-06 55.1 51 51.0
CANSAT64G0142 Cannabis sativa HOM05D000442 ORTHO05D001979 2.5e-06 54.7 52 51.9
Phvul.004G030100 Phaseolus vulgaris HOM05D000442 ORTHO05D001979 2.5e-06 54.7 51 52.9
SalBow3G2520 Salvia bowleyana HOM05D000442 ORTHO05D001242 2.5e-06 54.7 52 50.0
VMungo0464G1166 Vigna mungo HOM05D000442 ORTHO05D001979 2.5e-06 54.7 51 52.9
MELO3C018612.2 Cucumis melo HOM05D000442 ORTHO05D001242 3.2e-06 54.3 51 52.9
CsaV3_7G006820 Cucumis sativus L. HOM05D000442 ORTHO05D001242 3.2e-06 54.3 51 52.9
Glyma.19G024400 Glycine max HOM05D000442 ORTHO05D001979 3.2e-06 54.3 51 52.9
Rhsim05G0101700 Rhododendron simsii HOM05D000442 ORTHO05D001242 3.2e-06 54.3 52 50.0
Rhsim08G0070600 Rhododendron simsii HOM05D000442 ORTHO05D001979 3.2e-06 54.3 51 54.9
Rhsim11G0142000 Rhododendron simsii HOM05D000442 ORTHO05D001242 3.2e-06 54.3 51 52.9
Aqoxy3G00302 Aquilegia oxysepala HOM05D000442 ORTHO05D001979 4.2e-06 53.9 40 55.0
Cfa004848 Carpinus fangiana HOM05D000442 ORTHO05D001242 4.2e-06 53.9 51 49.0
CiPaw.05G029000 Carya illinoinensis HOM05D000442 ORTHO05D001242 4.2e-06 53.9 51 49.0
Haze_10503 Corylus avellana HOM05D000442 ORTHO05D001242 4.2e-06 53.9 51 49.0
Ca_04292_v3 Cicer arietinum L. HOM05D000442 ORTHO05D001979 5.5e-06 53.5 53 52.8
Haze_14146 Corylus avellana HOM05D000442 ORTHO05D001979 5.5e-06 53.5 51 47.1
Medtr6g012630 Medicago truncatula HOM05D000442 ORTHO05D001979 5.5e-06 53.5 40 60.0
SEGI_11997 Sequoiadendron giganteum HOM05D000442 ORTHO05D001242 5.5e-06 53.5 51 52.9
Thecc.06G060400 Theobroma cacao HOM05D000442 ORTHO05D001242 5.5e-06 53.5 52 50.0
Zm00001eb018350 Zea mays HOM05D000442 ORTHO05D001979 5.5e-06 53.5 51 51.0
CiPaw.03G061000 Carya illinoinensis HOM05D000442 ORTHO05D001979 7.2e-06 53.1 51 47.1
CDE01G0118 Ceratophyllum demersum HOM05D000442 ORTHO05D001242 7.2e-06 53.1 52 53.8
CDE02G4200 Ceratophyllum demersum HOM05D000442 ORTHO05D001242 7.2e-06 53.1 52 53.8
Glyma.13G062200 Glycine max HOM05D000442 ORTHO05D001979 7.2e-06 53.1 51 52.9
Oeu019463.1 Olea europaea HOM05D000442 ORTHO05D001979 7.2e-06 53.1 51 49.0
Oeu020998.1 Olea europaea HOM05D000442 ORTHO05D001979 7.2e-06 53.1 51 49.0
THA.LOC104821601 Tarenaya hassleriana HOM05D000442 ORTHO05D001242 7.2e-06 53.1 54 48.1
TWI14G0552 Tripterygium wilfordii HOM05D000442 ORTHO05D001242 7.2e-06 53.1 51 49.0
CiPaw.06G158300 Carya illinoinensis HOM05D000442 ORTHO05D001242 9.5e-06 52.8 51 49.0
ClCG09G016140 Citrullus lanatus HOM05D000442 ORTHO05D001242 9.5e-06 52.8 51 49.0
Cc07_g13890 Coffea canephora HOM05D000442 ORTHO05D001242 9.5e-06 52.8 53 50.9
Migut.H02281 Erythranthe guttata HOM05D000442 ORTHO05D001242 9.5e-06 52.8 52 51.9
Hma1.2p1_0409F.1_g146840 Hydrangea macrophylla HOM05D000442 ORTHO05D001979 9.5e-06 52.8 52 48.1
Hma1.2p1_3621F.1_g337080 Hydrangea macrophylla HOM05D000442 ORTHO05D001979 9.5e-06 52.8 52 48.1
Lalb_Chr21g0318661 Lupinus albus HOM05D000442 ORTHO05D001979 9.5e-06 52.8 51 51.0
MD09G1053100 Malus domestica HOM05D000442 ORTHO05D001979 9.5e-06 52.8 40 55.0
QL02p082579 Quercus lobata HOM05D000442 ORTHO05D001979 9.5e-06 52.8 51 51.0
RcHm_v2.0_Chr6g0270731 Rosa chinensis HOM05D000442 ORTHO05D001242 9.5e-06 52.8 51 47.1
SGA_v2.0_scaffold413G51184 Striga asiatica HOM05D000442 ORTHO05D001979 9.5e-06 52.8 40 57.5
TWI34G0700 Tripterygium wilfordii HOM05D000442 ORTHO05D001979 9.5e-06 52.8 51 51.0
GSVIVG01011439001 Vitis vinifera HOM05D000442 ORTHO05D001979 9.5e-06 52.8 51 49.0


User provided reference genes

Program Settings