Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 1.0e-66 256.5 122 100.0
Medtr8g027915 Medicago truncatula HOM05D007041 ORTHO05D008036 3.4e-38 161.8 100 79.0
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 8.4e-29 130.6 124 58.9
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 3.5e-27 125.2 122 53.3
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 5.3e-15 84.7 125 41.6
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.9e-15 84.3 116 41.4
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 4.5e-14 81.6 120 41.7
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 4.5e-14 81.6 116 46.6
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 5.8e-14 81.3 96 44.8
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.8e-14 81.3 96 44.8
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 7.6e-14 80.9 100 44.0
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-12 77.0 116 44.8
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.1e-12 77.0 104 38.5
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 1.1e-12 77.0 120 38.3
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 1.1e-12 77.0 122 39.3
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.1e-12 77.0 108 39.8
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 2.4e-12 75.9 91 42.9
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 2.4e-12 75.9 107 43.0
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.2e-12 75.1 91 42.9
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 5.4e-12 74.7 96 47.9
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.4e-12 74.7 96 47.9
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.4e-12 74.7 96 47.9
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 5.4e-12 74.7 99 39.4
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 7.1e-12 74.3 117 41.0
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 1.2e-11 73.6 91 41.8
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.1e-11 72.8 109 45.0
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 2.1e-11 72.8 90 47.8
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 3.5e-11 72.0 114 37.7
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 4.6e-11 71.6 93 38.7
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 7.9e-11 70.9 44 68.2
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.0e-10 70.5 52 61.5
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 1.3e-10 70.1 99 40.4
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 1.8e-10 69.7 54 55.6
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 2.3e-10 69.3 104 41.3
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 2.3e-10 69.3 116 38.8
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 3.9e-10 68.6 68 48.5
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 3.9e-10 68.6 92 42.4
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 3.9e-10 68.6 113 38.1
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 6.7e-10 67.8 100 41.0
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.1e-09 67.0 62 50.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.5e-09 66.6 120 36.7
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 1.9e-09 66.2 108 37.0
Lalb_Chr18g0044291 Lupinus albus HOM05D007041 ORTHO05D008036 2.5e-09 65.9 106 39.6
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 4.3e-09 65.1 88 45.5
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.6e-09 64.7 112 35.7
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 5.6e-09 64.7 94 37.2
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.4e-09 64.3 83 42.2
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.3e-08 63.5 44 59.1
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.6e-08 63.2 86 37.2
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 1.6e-08 63.2 108 40.7
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.6e-08 63.2 54 50.0
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 2.1e-08 62.8 100 42.0
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 2.1e-08 62.8 101 39.6
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 2.1e-08 62.8 94 40.4
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 2.8e-08 62.4 121 33.1
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 2.8e-08 62.4 106 34.0
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 3.7e-08 62.0 105 39.0
Lj1g0010364 Lotus japonicus HOM05D007041 ORTHO05D008036 4.8e-08 61.6 98 43.9
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 6.2e-08 61.2 120 35.0
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 6.2e-08 61.2 107 38.3
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 8.1e-08 60.8 82 35.4
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 8.1e-08 60.8 119 34.5
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 1.4e-07 60.1 127 29.1
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 1.8e-07 59.7 89 37.1
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 2.4e-07 59.3 45 55.6
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 2.4e-07 59.3 88 37.5
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 4.0e-07 58.5 37 62.2
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 4.0e-07 58.5 37 59.5
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 4.0e-07 58.5 37 59.5
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 4.0e-07 58.5 43 48.8
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.0e-07 58.5 106 34.0
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 4.0e-07 58.5 97 36.1
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.3e-07 58.2 106 34.0
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 5.3e-07 58.2 96 38.5
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 6.9e-07 57.8 38 57.9
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 9.0e-07 57.4 37 59.5
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 9.0e-07 57.4 90 32.2
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 1.2e-06 57.0 84 39.3
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 1.2e-06 57.0 37 59.5
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 1.2e-06 57.0 98 32.7
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.5e-06 56.6 106 34.0
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 2.0e-06 56.2 34 64.7
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 2.0e-06 56.2 56 50.0
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 2.0e-06 56.2 86 36.0
SGA_v2.0_scaffold11G05722 Striga asiatica HOM05D007041 ORTHO05D008036 2.6e-06 55.8 95 41.1
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 3.4e-06 55.5 34 64.7
TPR.G7659 Trifolium pratense HOM05D007041 ORTHO05D008036 3.4e-06 55.5 103 39.8
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 4.5e-06 55.1 48 47.9
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 1.0e-05 53.9 104 31.7


User provided reference genes

Program Settings