Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.4e-57 226.1 115 100.0
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 8.4e-47 190.3 115 82.6
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 3.7e-34 148.3 126 65.1
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 6.9e-33 144.1 120 66.7
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.2e-31 139.0 120 66.7
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 2.9e-31 138.7 122 63.1
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 5.5e-30 134.4 117 62.4
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 2.4e-25 119.0 121 57.9
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 9.0e-25 117.1 121 57.0
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 1.2e-24 116.7 108 56.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.0e-24 115.9 116 60.3
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 2.6e-24 115.5 115 55.7
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 2.6e-24 115.5 108 55.6
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 7.6e-24 114.0 115 54.8
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 7.6e-24 114.0 117 53.0
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.3e-23 113.2 117 52.1
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.3e-23 113.2 117 52.1
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.7e-23 112.8 117 58.1
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 3.8e-23 111.7 108 54.6
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 5.0e-23 111.3 115 54.8
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 6.5e-23 110.9 113 53.1
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 8.4e-23 110.5 119 52.9
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 2.5e-22 109.0 115 52.2
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.5e-22 109.0 117 54.7
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 4.2e-22 108.2 117 53.8
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 4.2e-22 108.2 116 51.7
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 7.2e-22 107.5 114 50.9
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 9.3e-22 107.1 114 50.9
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 9.3e-22 107.1 117 53.0
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.6e-21 106.3 113 50.4
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 3.5e-21 105.1 112 50.0
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 4.6e-21 104.8 114 50.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 4.6e-21 104.8 117 54.7
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.3e-20 102.4 107 49.5
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.3e-20 102.4 116 50.9
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 5.1e-20 101.3 112 48.2
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 6.7e-20 100.9 120 50.8
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 6.7e-20 100.9 116 47.4
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 1.1e-19 100.1 118 50.0
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-19 100.1 114 48.2
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.9e-19 99.4 115 47.8
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.5e-19 99.0 111 50.5
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 2.5e-19 99.0 115 47.8
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 4.3e-19 98.2 112 50.9
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.1e-17 92.0 114 44.7
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.1e-17 91.7 109 42.2
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 4.1e-17 91.7 109 42.2
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.3e-17 91.3 116 45.7
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 1.5e-16 89.7 110 56.4
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 2.0e-16 89.4 111 55.0
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.9e-16 87.8 113 44.2
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 1.0e-15 87.0 106 48.1
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.0e-15 87.0 113 44.2
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 1.0e-15 87.0 112 45.5
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.0e-15 87.0 113 43.4
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 1.7e-15 86.3 110 54.5
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.9e-15 85.5 124 41.9
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 2.9e-15 85.5 114 43.9
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 1.4e-14 83.2 109 45.0
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 1.9e-14 82.8 106 46.2
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 7.9e-13 77.4 123 43.1
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.4e-12 76.6 107 44.9
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 2.3e-12 75.9 104 47.1
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 3.9e-12 75.1 113 40.7
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 5.1e-12 74.7 116 38.8
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 6.7e-12 74.3 116 40.5
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 6.7e-12 74.3 113 41.6
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 8.8e-12 73.9 113 41.6
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 1.1e-11 73.6 108 42.6
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 1.5e-11 73.2 111 37.8
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 2.0e-11 72.8 111 42.3
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 2.0e-11 72.8 117 38.5
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 3.3e-11 72.0 123 36.6
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 3.3e-11 72.0 112 38.4
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 4.3e-11 71.6 110 35.5
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 4.3e-11 71.6 117 39.3
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 4.3e-11 71.6 106 43.4
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 5.7e-11 71.2 119 37.8
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 5.7e-11 71.2 119 37.8
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 5.7e-11 71.2 119 37.8
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 5.7e-11 71.2 113 38.9
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 7.4e-11 70.9 118 38.1
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 9.7e-11 70.5 77 51.9
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 1.3e-10 70.1 117 40.2
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.8e-10 68.9 118 37.3
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 2.8e-10 68.9 117 38.5
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 2.8e-10 68.9 116 37.1
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 2.8e-10 68.9 112 40.2
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.7e-10 68.6 110 36.4
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 6.3e-10 67.8 111 37.8
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 6.3e-10 67.8 115 37.4
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 6.3e-10 67.8 112 37.5
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 3.1e-09 65.5 111 37.8
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 1.2e-08 63.5 107 42.1
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.0e-08 62.8 118 33.9
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.0e-08 62.8 108 35.2
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.0e-08 62.8 108 35.2
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.5e-08 61.6 106 34.9
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 4.5e-08 61.6 110 37.3
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 5.9e-08 61.2 114 33.3
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.7e-07 59.7 112 33.0
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 2.9e-07 58.9 112 33.0
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.9e-07 58.9 130 32.3
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 3.8e-07 58.5 113 34.5
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.5e-07 57.4 112 36.6
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 1.4e-06 56.6 129 34.1
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 1.9e-06 56.2 112 33.0
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 3.2e-06 55.5 110 31.8
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 3.2e-06 55.5 113 35.4
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 4.2e-06 55.1 113 27.4
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 4.2e-06 55.1 123 33.3
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 4.2e-06 55.1 112 33.9
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 4.2e-06 55.1 112 36.6
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 7.2e-06 54.3 115 34.8
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.2e-06 54.3 106 36.8
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 7.2e-06 54.3 36 63.9
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 9.4e-06 53.9 113 25.7


User provided reference genes

Program Settings