Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 6.9e-54 213.8 112 100.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 4.6e-50 201.1 112 92.9
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 1.9e-40 169.1 110 77.3
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 7.4e-40 167.2 110 74.5
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 3.7e-39 164.9 110 73.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 2.6e-37 158.7 110 70.0
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 6.5e-36 154.1 108 70.4
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 6.5e-36 154.1 110 70.0
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.4e-35 152.9 108 71.3
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 8.2e-31 137.1 105 61.9
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 1.4e-30 136.3 105 61.9
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-29 133.3 104 61.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 1.2e-29 133.3 105 63.8
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 2.9e-28 128.6 105 61.0
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 2.5e-27 125.6 107 58.9
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 4.2e-27 124.8 107 58.9
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 4.2e-27 124.8 104 62.5
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 3.6e-26 121.7 105 57.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-26 121.7 107 57.9
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 4.7e-26 121.3 107 56.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 6.1e-26 120.9 96 60.4
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 6.1e-26 120.9 96 60.4
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 3.9e-25 118.2 101 62.4
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 5.2e-25 117.9 96 58.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 5.2e-25 117.9 107 55.1
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 2.0e-24 115.9 106 59.4
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 2.0e-24 115.9 101 59.4
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 3.3e-24 115.2 109 54.1
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 4.4e-24 114.8 108 51.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 4.4e-24 114.8 101 59.4
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 7.4e-24 114.0 102 55.9
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 9.7e-24 113.6 101 56.4
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 1.7e-23 112.8 106 54.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.7e-23 112.8 105 52.4
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.8e-23 112.1 100 56.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 2.8e-23 112.1 104 53.8
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.8e-23 112.1 93 61.3
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 2.8e-23 112.1 107 58.9
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 2.8e-23 112.1 107 58.9
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 6.3e-23 110.9 105 55.2
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 1.1e-22 110.2 103 56.3
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.4e-22 109.8 105 52.4
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.8e-22 109.4 107 54.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.8e-22 109.4 95 55.8
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.8e-22 109.4 95 55.8
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 3.1e-22 108.6 106 49.1
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 7.0e-22 107.5 105 56.2
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 7.0e-22 107.5 108 53.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 1.6e-21 106.3 96 55.2
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 2.0e-21 105.9 95 54.7
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 2.0e-21 105.9 107 55.1
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 3.5e-21 105.1 102 57.8
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.5e-21 105.1 108 52.8
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 3.5e-21 105.1 110 53.6
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 5.9e-21 104.4 111 55.9
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 7.7e-21 104.0 106 48.1
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 1.0e-20 103.6 107 51.4
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 5.0e-20 101.3 105 55.2
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 5.0e-20 101.3 107 53.3
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 8.5e-20 100.5 97 53.6
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 8.5e-20 100.5 103 50.5
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 1.1e-19 100.1 96 55.2
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.9e-19 99.4 107 49.5
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 3.2e-19 98.6 86 58.1
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.2e-19 97.4 94 56.4
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 7.2e-19 97.4 94 57.4
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 7.2e-19 97.4 115 45.2
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 7.2e-19 97.4 108 51.9
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 9.4e-19 97.1 94 56.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.4e-19 97.1 94 55.3
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.4e-19 97.1 86 55.8
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.4e-19 97.1 86 55.8
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 1.6e-18 96.3 114 48.2
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 6.1e-18 94.4 93 62.4
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.1e-18 94.4 87 55.2
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 8.0e-18 94.0 93 62.4
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 8.0e-18 94.0 93 49.5
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.0e-17 93.6 93 49.5
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 3.0e-17 92.0 96 47.9
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 3.0e-17 92.0 96 47.9
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.7e-17 90.9 105 44.8
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 6.7e-17 90.9 110 43.6
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.2e-16 90.1 77 59.7
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.2e-16 90.1 112 47.3
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-16 89.7 112 47.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.3e-16 88.6 96 47.9
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.5e-16 87.4 112 46.4
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 9.7e-16 87.0 108 43.5
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 9.7e-16 87.0 67 64.2
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.7e-15 85.1 91 46.2
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 8.2e-15 84.0 110 44.5
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 8.2e-15 84.0 68 66.2
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 8.2e-15 84.0 105 45.7
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 8.2e-15 84.0 94 43.6
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 1.8e-14 82.8 114 42.1
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.8e-14 82.8 76 52.6
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 4.1e-14 81.6 109 39.4
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 5.3e-14 81.3 95 43.2
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 7.0e-14 80.9 95 46.3
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.2e-13 80.1 106 42.5
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.6e-13 79.7 105 44.8
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 2.0e-13 79.3 103 42.7
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 2.7e-13 79.0 85 51.8
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 3.5e-13 78.6 98 48.0
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 4.5e-13 78.2 93 52.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 5.9e-13 77.8 110 40.9
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 7.7e-13 77.4 93 48.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.3e-12 76.6 100 42.0
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 2.2e-12 75.9 98 45.9
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 5.0e-12 74.7 110 44.5
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 5.0e-12 74.7 93 45.2
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 6.5e-12 74.3 99 46.5
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 6.5e-12 74.3 99 44.4
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 6.5e-12 74.3 102 47.1
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 1.1e-11 73.6 98 46.9
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-11 73.6 111 41.4
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.1e-11 73.6 111 41.4
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 1.9e-11 72.8 99 42.4
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 4.2e-11 71.6 99 45.5
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 4.2e-11 71.6 99 45.5
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 4.2e-11 71.6 111 37.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 5.5e-11 71.2 113 38.9
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 7.2e-11 70.9 99 45.5
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 7.2e-11 70.9 99 45.5
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 1.2e-10 70.1 87 44.8
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 99 42.4
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-10 69.7 99 42.4
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 2.1e-10 69.3 68 54.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 3.6e-10 68.6 99 41.4
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 4.7e-10 68.2 99 41.4
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 4.7e-10 68.2 99 41.4
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 6.1e-10 67.8 99 44.4
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.4e-09 66.6 77 54.5
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 1.8e-09 66.2 79 46.8
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.3e-09 65.9 107 42.1
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 2.3e-09 65.9 68 52.9
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 2.3e-09 65.9 99 44.4
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 2.3e-09 65.9 68 52.9
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 3.0e-09 65.5 70 47.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 4.0e-09 65.1 68 51.5
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 4.0e-09 65.1 68 51.5
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 5.2e-09 64.7 77 49.4
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 6.8e-09 64.3 82 45.1
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.2e-08 63.5 75 48.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.6e-08 62.4 77 51.9
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.6e-08 62.4 79 43.0
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 7.5e-08 60.8 77 50.6
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 7.5e-08 60.8 78 50.0
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 7.5e-08 60.8 78 50.0
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 7.5e-08 60.8 75 45.3
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 9.8e-08 60.5 75 46.7
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 9.8e-08 60.5 75 46.7
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 9.8e-08 60.5 75 46.7
Aa31LG6G3890 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.3e-07 60.1 77 49.4
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 2.2e-07 59.3 77 49.4
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 2.2e-07 59.3 77 49.4
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 2.2e-07 59.3 77 49.4
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.2e-07 59.3 75 45.3
Cfa017341 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.2e-07 59.3 64 54.7
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 6.3e-07 57.8 75 44.0
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 8.3e-07 57.4 104 38.5
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 1.1e-06 57.0 75 41.3
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 1.1e-06 57.0 61 47.5
arahy.Tifrunner.gnm1.ann1.6X23CA Arachis hypogaea HOM05D005226 ORTHO05D004666 1.4e-06 56.6 78 48.7
Carub.0007s1945 Capsella rubella HOM05D009543 ORTHO05D004666 1.4e-06 56.6 105 35.2
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 1.8e-06 56.2 70 45.7
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 4.1e-06 55.1 104 33.7
Thhalv10026583m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 4.1e-06 55.1 76 44.7


User provided reference genes

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