Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7612 Trifolium pratense HOM05D007680 ORTHO05D009702 1.5e-45 186.4 147 100.0
TPR.G305 Trifolium pratense HOM05D007680 ORTHO05D009702 2.0e-24 116.3 157 78.3
Psat6g094320 Pisum sativum HOM05D007680 ORTHO05D009702 7.0e-22 107.8 151 71.5
Medtr1g050700 Medicago truncatula HOM05D007680 ORTHO05D009702 5.9e-21 104.8 153 56.2
Phvul.007G245300 Phaseolus vulgaris HOM05D007680 ORTHO05D009702 1.3e-20 103.6 65 90.8
Lalb_Chr01g0010321 Lupinus albus HOM05D007680 ORTHO05D009702 8.6e-20 100.9 155 72.9
Glyma.02G165700 Glycine max HOM05D007680 ORTHO05D009702 4.2e-19 98.6 65 86.2
VMungo0720G1600 Vigna mungo HOM05D007680 ORTHO05D009702 1.2e-18 97.1 65 86.2
Lalb_Chr19g0129271 Lupinus albus HOM05D007680 ORTHO05D009702 1.6e-18 96.7 150 70.0
arahy.Tifrunner.gnm1.ann1.VK4BH4 Arachis hypogaea HOM05D007680 ORTHO05D009702 6.1e-18 94.7 68 77.9
CiPaw.14G028600 Carya illinoinensis HOM05D007680 ORTHO05D009702 4.0e-17 92.0 66 81.8
QL04p041248 Quercus lobata HOM05D007680 ORTHO05D009702 4.0e-17 92.0 65 78.5
TAR636G0370 Trochodendron aralioides HOM05D007680 ORTHO05D009702 4.0e-17 92.0 66 80.3
Haze_02610 Corylus avellana HOM05D007680 ORTHO05D009702 5.2e-17 91.7 66 80.3
THA.LOC104824894 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 5.2e-17 91.7 66 81.8
THA.LOC104824900 Tarenaya hassleriana HOM05D007680 ORTHO05D009702 5.2e-17 91.7 66 81.8
MBI17_g11658_MAGBIO Magnolia biondii HOM05D007680 ORTHO05D009702 6.8e-17 91.3 66 81.8
ATR0820G188 Amborella trichopoda HOM05D007680 ORTHO05D009702 8.9e-17 90.9 66 81.8
TAR636G3254 Trochodendron aralioides HOM05D007680 ORTHO05D009702 8.9e-17 90.9 66 80.3
Atru.chr12.970 Acer truncatum HOM05D007680 ORTHO05D009702 2.0e-16 89.7 66 78.8
Ciclev10032885m.g Citrus clementina HOM05D007680 ORTHO05D009702 2.0e-16 89.7 68 79.4
Nn2g14013 Nelumbo nucifera HOM05D007680 ORTHO05D009702 2.6e-16 89.4 64 81.2
Actinidia31090 Actinidia chinensis HOM05D007680 ORTHO05D009702 3.4e-16 89.0 67 80.6
Cfa011226 Carpinus fangiana HOM05D007680 ORTHO05D009702 3.4e-16 89.0 66 77.3
TAR636G2061 Trochodendron aralioides HOM05D007680 ORTHO05D009702 3.4e-16 89.0 66 77.3
CSS0013494 Camellia sinensis var. sinensis HOM05D007680 ORTHO05D009702 4.4e-16 88.6 67 79.1
ClCG05G021580 Citrullus lanatus HOM05D007680 ORTHO05D009702 5.7e-16 88.2 67 80.6
MELO3C012366.2 Cucumis melo HOM05D007680 ORTHO05D009702 5.7e-16 88.2 67 80.6
FAN03G2755 Fragaria x ananassa HOM05D007680 ORTHO05D009702 5.7e-16 88.2 68 77.9
FAN06G0858 Fragaria x ananassa HOM05D007680 ORTHO05D009702 5.7e-16 88.2 68 77.9
MD07G1087200 Malus domestica HOM05D007680 ORTHO05D009702 5.7e-16 88.2 68 77.9
Sed0005690 Sechium edule HOM05D007680 ORTHO05D009702 5.7e-16 88.2 67 80.6
Thecc.10G109800 Theobroma cacao HOM05D007680 ORTHO05D009702 5.7e-16 88.2 68 77.9
Thecc.K0008600 Theobroma cacao HOM05D007680 ORTHO05D009702 5.7e-16 88.2 68 77.9
Cpa.g.sc128.47 Carica papaya HOM05D007680 ORTHO05D009702 7.5e-16 87.8 66 81.8
Gohir.A05G288200 Gossypium hirsutum HOM05D007680 ORTHO05D009702 7.5e-16 87.8 68 77.9
PSO384G1244 Papaver somniferum HOM05D007680 ORTHO05D009702 7.5e-16 87.8 67 79.1
CsaV3_5G035650 Cucumis sativus L. HOM05D007680 ORTHO05D009702 9.8e-16 87.4 67 79.1
RcHm_v2.0_Chr1g0333251 Rosa chinensis HOM05D007680 ORTHO05D009702 9.8e-16 87.4 68 76.5
EL10Ac2g03857 Beta vulgaris HOM05D007680 ORTHO05D009702 1.3e-15 87.0 68 75.0
Prupe.2G086600 Prunus persica HOM05D007680 ORTHO05D009702 1.3e-15 87.0 68 76.5
GSVIVG01034708001 Vitis vinifera HOM05D007680 ORTHO05D009702 1.3e-15 87.0 64 78.1
Lj2C27T21 Lonicera japonica HOM05D007680 ORTHO05D009702 2.2e-15 86.3 67 79.1
Ah.10g034230 Amaranthus hybridus HOM05D007680 ORTHO05D009702 3.7e-15 85.5 68 73.5
CDE08G1572 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 3.7e-15 85.5 66 71.2
Gohir.D05G289400 Gossypium hirsutum HOM05D007680 ORTHO05D009702 3.7e-15 85.5 68 76.5
Gorai.009G304500 Gossypium raimondii HOM05D007680 ORTHO05D009702 3.7e-15 85.5 68 76.5
Thhalv10026523m.g Eutrema salsugineum HOM05D007680 ORTHO05D009702 4.9e-15 85.1 66 74.2
vmacro10277 Vaccinium macrocarpon HOM05D007680 ORTHO05D009702 4.9e-15 85.1 67 76.1
Duzib128G1419 Durio zibethinus HOM05D007680 ORTHO05D009702 6.3e-15 84.7 68 75.0
Potri.008G025700 Populus trichocarpa HOM05D007680 ORTHO05D009702 6.3e-15 84.7 65 78.5
Hma1.2p1_0026F.1_g016760 Hydrangea macrophylla HOM05D007680 ORTHO05D009702 8.3e-15 84.3 67 74.6
CDE02G0611 Ceratophyllum demersum HOM05D007680 ORTHO05D009702 1.1e-14 84.0 65 70.8
Aqoxy2G01382 Aquilegia oxysepala HOM05D007680 ORTHO05D009702 1.4e-14 83.6 63 74.6
COL.COLO4_33896 Corchorus olitorius HOM05D007680 ORTHO05D009702 1.4e-14 83.6 68 75.0
Potri.010G234900 Populus trichocarpa HOM05D007680 ORTHO05D009702 1.4e-14 83.6 67 76.1
CARHR246610 Cardamine hirsuta HOM05D007680 ORTHO05D009702 1.8e-14 83.2 66 74.2
HanXRQChr08g0217901 Helianthus annuus HOM05D007680 ORTHO05D009702 1.8e-14 83.2 67 74.6
Sp7g35810 Schrenkiella parvula HOM05D007680 ORTHO05D009702 1.8e-14 83.2 66 72.7
Sopen11g003400 Solanum pennellii HOM05D007680 ORTHO05D009702 3.1e-14 82.4 65 76.9
PGSC0003DMG400027341 Solanum tuberosum HOM05D007680 ORTHO05D009702 3.1e-14 82.4 65 76.9
PGR044G0006 Punica granatum HOM05D007680 ORTHO05D009702 4.1e-14 82.0 66 77.3
AL7G12370 Arabidopsis lyrata HOM05D007680 ORTHO05D009702 5.4e-14 81.6 66 72.7
AT4G40045 Arabidopsis thaliana HOM05D007680 ORTHO05D009702 5.4e-14 81.6 66 72.7
Oeu060261.1 Olea europaea HOM05D007680 ORTHO05D009702 5.4e-14 81.6 65 75.4
TWI38G2267 Tripterygium wilfordii HOM05D007680 ORTHO05D009702 9.2e-14 80.9 66 74.2
Carub.0007s0203 Capsella rubella HOM05D007680 ORTHO05D009702 2.7e-13 79.3 66 71.2
SalBow6G1777 Salvia bowleyana HOM05D007680 ORTHO05D009702 2.7e-13 79.3 65 72.3
Sc20g0001300 Simmondsia chinensis HOM05D007680 ORTHO05D009702 2.7e-13 79.3 65 70.8
Migut.F01656 Erythranthe guttata HOM05D007680 ORTHO05D009702 4.5e-13 78.6 65 73.8
Manes.05G202400 Manihot esculenta HOM05D007680 ORTHO05D009702 4.5e-13 78.6 65 75.4
Lj6g0009049 Lotus japonicus HOM05D007680 ORTHO05D009702 5.9e-13 78.2 50 80.0
BolC1t00107H Brassica oleracea HOM05D007680 ORTHO05D009702 1.7e-12 76.6 66 72.7
A01p00970 Brassica napus HOM05D007680 ORTHO05D009702 3.8e-12 75.5 66 71.2
C01p01090 Brassica napus HOM05D007680 ORTHO05D009702 3.8e-12 75.5 66 71.2
BraA01t00095Z Brassica rapa HOM05D007680 ORTHO05D009702 3.8e-12 75.5 66 71.2
SEGI_03872 Sequoiadendron giganteum HOM05D007680 ORTHO05D009702 5.0e-12 75.1 61 68.9
Glyma.10G104651 Glycine max HOM05D007680 ORTHO05D009702 4.3e-11 72.0 63 65.1
Dinv30655 Davidia involucrata HOM05D007680 ORTHO05D009702 5.6e-11 71.6 50 78.0
unitig_899.g15034 Utricularia gibba HOM05D007680 ORTHO05D009702 9.5e-11 70.9 67 67.2
Hund17353 Selenicereus undatus HOM05D007680 ORTHO05D009702 1.6e-10 70.1 57 70.2
arahy.Tifrunner.gnm1.ann1.UIS3VC Arachis hypogaea HOM05D007680 ORTHO05D009702 1.4e-09 67.0 64 60.9
Zm00001eb411120 Zea mays HOM05D007680 ORTHO05D009702 6.8e-09 64.7 64 59.4
Sabra10G0182100 Salix brachista HOM05D007680 ORTHO05D009702 8.9e-09 64.3 50 68.0
Lsat_1_v5_gn_2_102521 Lactuca sativa HOM05D007680 ORTHO05D009702 2.0e-08 63.2 65 58.5
AUR62043943 Chenopodium quinoa HOM05D000002 ORTHO05D000001 3.4e-08 62.4 45 73.3
Os12g0206700 Oryza sativa ssp. japonica HOM05D007680 ORTHO05D009702 2.9e-07 59.3 64 54.7
Zm00001eb004510 Zea mays HOM05D007680 ORTHO05D009702 1.9e-06 56.6 59 61.0


User provided reference genes

Program Settings