Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 2.4e-187 658.7 335 100.0
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 6.2e-175 617.5 335 92.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 3.0e-169 598.6 335 91.3
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 9.9e-165 583.6 292 95.5
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.6e-159 566.2 335 82.7
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 5.8e-157 557.8 335 82.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.8e-156 555.1 342 81.0
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.0e-154 547.7 348 79.0
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 3.3e-152 542.0 330 80.6
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.0e-149 532.7 348 77.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 7.6e-149 530.8 333 78.7
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 1.6e-146 523.1 336 76.2
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 6.7e-145 517.7 336 75.3
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.9e-144 516.2 325 79.7
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 3.3e-144 515.4 323 76.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 5.7e-144 514.6 323 77.4
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.3e-143 513.5 346 74.9
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.6e-143 513.1 330 75.8
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 2.4e-142 509.2 338 74.9
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 3.1e-142 508.8 342 73.7
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 4.1e-142 508.4 323 77.1
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 9.0e-142 507.3 332 74.1
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.0e-141 506.1 331 74.6
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 2.0e-141 506.1 335 75.8
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 4.5e-141 505.0 330 73.9
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 4.5e-141 505.0 267 86.1
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 4.5e-141 505.0 325 74.8
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.7e-140 503.1 332 74.1
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.2e-140 502.7 334 74.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.2e-140 502.7 333 73.6
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.8e-140 501.9 324 73.8
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.8e-140 501.9 324 73.8
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 3.8e-140 501.9 330 73.6
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.4e-139 500.0 328 73.8
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.2e-139 498.8 325 73.8
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 3.2e-139 498.8 331 75.5
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.1e-138 496.1 328 74.4
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 2.7e-138 495.7 267 85.0
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 4.6e-138 495.0 328 75.0
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 4.6e-138 495.0 334 72.5
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 6.1e-138 494.6 261 87.0
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 1.3e-137 493.4 268 83.6
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.3e-137 492.7 267 85.0
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 3.0e-137 492.3 339 74.9
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.9e-137 491.9 324 73.1
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 6.7e-137 491.1 334 72.8
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.5e-136 490.0 324 71.9
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 1.9e-136 489.6 330 71.5
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.9e-136 489.6 285 81.4
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 2.5e-136 489.2 335 74.9
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.5e-136 489.2 326 72.7
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-136 488.8 330 71.5
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.3e-136 488.4 336 71.7
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 7.4e-136 487.6 330 71.2
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 7.4e-136 487.6 330 72.1
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.2e-135 486.1 330 70.9
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 2.2e-135 486.1 261 85.1
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 2.8e-135 485.7 323 78.6
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.8e-135 485.0 331 71.3
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.3e-135 484.6 261 85.1
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 8.2e-135 484.2 324 76.5
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 8.2e-135 484.2 323 78.3
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.1e-134 483.8 268 81.7
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.4e-134 483.4 330 71.2
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.4e-134 483.4 330 71.2
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.1e-134 482.3 268 82.1
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 5.3e-134 481.5 333 73.3
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 6.9e-134 481.1 332 72.0
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 6.9e-134 481.1 261 85.4
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 6.9e-134 481.1 335 73.4
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 1.2e-133 480.3 333 71.2
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.5e-133 479.9 330 70.3
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.5e-133 479.9 333 69.7
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.5e-133 479.9 326 70.9
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.5e-133 479.9 259 84.9
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.6e-133 479.2 334 70.7
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.4e-133 478.8 259 84.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 3.4e-133 478.8 259 84.6
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.5e-133 478.4 265 83.8
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 4.5e-133 478.4 278 80.6
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 5.9e-133 478.0 331 69.5
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 5.9e-133 478.0 338 69.8
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.7e-133 477.6 325 71.4
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 7.7e-133 477.6 323 70.6
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.0e-132 477.2 330 70.0
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.0e-132 477.2 330 70.0
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.7e-132 476.5 261 83.5
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 2.9e-132 475.7 333 70.9
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.8e-132 475.3 270 81.1
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 3.8e-132 475.3 326 74.8
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 5.0e-132 474.9 270 81.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 6.5e-132 474.6 330 70.6
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 6.5e-132 474.6 330 70.6
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 6.5e-132 474.6 326 73.0
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.9e-131 473.0 328 71.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 3.2e-131 472.2 330 69.7
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 4.2e-131 471.9 324 70.4
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 7.2e-131 471.1 329 69.3
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.6e-130 469.9 331 68.3
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 6.1e-130 468.0 325 69.5
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 7.9e-130 467.6 331 69.8
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 7.9e-130 467.6 260 81.5
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.0e-129 467.2 328 73.5
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 3.3e-128 462.2 324 69.8
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-128 462.2 327 69.7
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 3.3e-128 462.2 240 87.9
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 4.4e-128 461.8 240 88.3
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 5.7e-128 461.5 323 69.0
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.8e-127 459.1 261 80.1
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 6.3e-127 458.0 264 80.3
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.4e-126 456.8 271 78.6
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.8e-126 456.4 332 67.5
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.1e-126 455.7 332 67.2
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.0e-124 450.7 219 94.5
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-124 450.3 276 76.8
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 2.5e-123 446.0 233 88.4
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 9.4e-123 444.1 335 65.7
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.1e-122 443.0 263 78.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 3.5e-117 425.6 216 89.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 5.9e-117 424.9 324 63.3
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 2.2e-116 422.9 245 83.3
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.1e-115 420.6 268 73.9
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.5e-115 420.2 270 73.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 5.5e-115 418.3 217 86.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-114 417.2 219 85.8
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 2.3e-113 412.9 217 86.2
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 3.3e-112 409.1 221 86.4
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.0e-108 397.5 264 72.3
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.0e-108 395.2 264 70.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 6.5e-108 394.8 208 86.5
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.5e-107 393.7 265 70.9
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 7.0e-102 374.8 217 77.4
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 8.0e-98 361.3 295 66.4
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.8e-94 350.1 269 60.2
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.7e-92 343.6 269 61.7
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 8.0e-82 308.1 233 61.8
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 3.1e-81 306.2 243 63.0
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 8.3e-79 298.1 154 87.0
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.4e-78 296.6 159 84.3
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-73 280.8 217 65.9
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 3.2e-70 269.6 245 56.3
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-68 263.5 212 61.8
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 3.3e-67 259.6 210 62.9
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 1.8e-65 253.8 222 59.0
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 6.8e-65 251.9 147 74.8
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.7e-55 220.7 126 78.6
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.6e-53 212.6 147 68.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.3e-36 157.1 156 51.9
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 1.2e-16 91.7 81 55.6
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.5e-16 91.3 114 49.1
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 1.7e-15 87.8 106 48.1
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 3.8e-15 86.7 49 75.5
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.7e-10 70.1 62 53.2


User provided reference genes

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