Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.4e-46 189.1 89 100.0
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 2.8e-42 174.9 89 91.0
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 7.7e-40 166.8 89 87.6
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 2.2e-39 165.2 89 86.5
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 5.0e-39 164.1 89 86.5
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 7.2e-38 160.2 90 82.2
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 3.3e-35 151.4 90 77.8
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 76.7
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 2.8e-34 148.3 89 74.2
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 9.1e-33 143.3 89 71.9
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 9.1e-33 143.3 89 71.9
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.6e-32 142.5 87 71.3
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.6e-32 141.7 87 72.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 3.5e-32 141.4 87 71.3
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 4.5e-32 141.0 87 71.3
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 4.5e-32 141.0 87 70.1
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.7e-31 139.0 87 69.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.7e-31 139.0 87 71.3
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 1.7e-31 139.0 84 72.6
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.7e-31 139.0 87 71.3
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 2.9e-31 138.3 87 70.1
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 3.8e-31 137.9 87 70.1
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.8e-31 137.9 83 75.9
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 3.8e-31 137.9 87 70.1
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 5.0e-31 137.5 87 69.0
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 6.5e-31 137.1 87 67.8
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 8.5e-31 136.7 87 66.7
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 8.5e-31 136.7 87 70.1
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 8.5e-31 136.7 87 67.8
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 69.0
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 70.1
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 70.1
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 67.8
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.1e-30 136.3 87 67.8
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.5e-30 136.0 87 70.1
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.5e-30 136.0 88 68.2
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 1.9e-30 135.6 87 69.0
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 2.5e-30 135.2 87 67.8
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.5e-30 135.2 87 67.8
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 3.2e-30 134.8 87 69.0
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 3.2e-30 134.8 87 66.7
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.2e-30 134.4 87 69.0
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 5.5e-30 134.0 87 67.8
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 5.5e-30 134.0 87 67.8
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.5e-30 134.0 87 67.8
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.5e-30 134.0 87 67.8
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 9.4e-30 133.3 87 70.1
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 9.4e-30 133.3 87 70.1
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.2e-29 132.9 84 67.9
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.2e-29 132.9 87 64.4
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.2e-29 132.9 87 69.0
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 1.6e-29 132.5 87 66.7
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 1.6e-29 132.5 87 66.7
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 1.6e-29 132.5 84 67.9
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.6e-29 132.5 87 67.8
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 2.1e-29 132.1 87 66.7
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 2.7e-29 131.7 87 65.5
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 2.7e-29 131.7 87 70.1
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 3.6e-29 131.3 83 72.3
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 3.6e-29 131.3 87 65.5
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 4.7e-29 131.0 87 64.4
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 6.1e-29 130.6 87 64.4
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 6.1e-29 130.6 89 64.0
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 6.1e-29 130.6 87 65.5
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 8.0e-29 130.2 87 66.7
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 8.0e-29 130.2 87 64.4
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 1.0e-28 129.8 87 65.5
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.0e-28 129.8 87 65.5
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.0e-28 129.8 87 64.4
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.4e-28 129.4 87 64.4
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.4e-28 129.4 88 64.8
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.8e-28 129.0 87 64.4
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 2.3e-28 128.6 87 62.1
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 2.3e-28 128.6 87 63.2
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.0e-28 128.3 88 63.6
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.0e-28 127.9 87 67.8
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 5.2e-28 127.5 87 64.4
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 6.7e-28 127.1 83 68.7
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 6.7e-28 127.1 89 64.0
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 8.8e-28 126.7 98 62.2
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 8.8e-28 126.7 87 62.1
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 60.9
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 63.2
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 60.9
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 60.9
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 63.2
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 60.9
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 63.2
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 63.2
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 1.2e-27 126.3 87 60.9
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.5e-27 125.9 87 64.4
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 2.6e-27 125.2 87 63.2
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 2.6e-27 125.2 87 62.1
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 3.3e-27 124.8 87 63.2
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.4e-27 124.4 88 64.8
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 7.5e-27 123.6 87 63.2
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 9.7e-27 123.2 89 59.6
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.3e-26 122.9 87 60.9
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.2e-26 122.1 87 58.6
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.8e-26 121.7 82 64.6
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 2.8e-26 121.7 87 64.4
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 3.7e-26 121.3 82 64.6
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.8e-26 120.9 87 65.5
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.8e-26 120.9 87 65.5
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.8e-26 120.9 87 65.5
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.8e-26 120.9 87 65.5
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.1e-25 119.8 87 65.5
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.1e-25 119.8 88 61.4
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 1.1e-25 119.8 87 62.1
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 1.4e-25 119.4 87 64.4
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.8e-25 119.0 87 65.5
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.4e-25 118.6 87 63.2
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 9.1e-25 116.7 88 60.2
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 2.7e-24 115.2 87 57.5
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 5.9e-24 114.0 87 63.2
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 7.7e-24 113.6 84 61.9
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 2.2e-23 112.1 87 58.6
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.2e-21 106.3 85 57.6
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 4.7e-21 104.4 75 61.3
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 3.0e-20 101.7 58 75.9
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 4.4e-19 97.8 87 55.2
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-19 97.4 85 50.6
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 3.1e-17 91.7 62 62.9
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.1e-14 83.2 77 53.2
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 9.5e-14 80.1 60 58.3
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 1.2e-13 79.7 60 58.3
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.8e-12 75.9 56 60.7
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.8e-12 75.9 56 60.7
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.0e-12 75.1 57 56.1
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 5.7e-11 70.9 45 71.1
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 5.7e-11 70.9 82 40.2
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 2.8e-10 68.6 42 69.0
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 3.7e-10 68.2 42 69.0
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-09 66.2 71 43.7
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 1.4e-09 66.2 71 43.7
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 3.1e-09 65.1 74 44.6
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 5.4e-09 64.3 74 44.6
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 5.4e-09 64.3 74 44.6
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 7.0e-09 63.9 40 65.0
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 7.0e-09 63.9 40 65.0
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 5.9e-08 60.8 74 43.2
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.3e-07 58.9 82 34.1
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 2.9e-07 58.5 74 41.9
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 5.0e-07 57.8 74 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 6.6e-07 57.4 72 38.9
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 8.6e-07 57.0 87 29.9
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 1.5e-06 56.2 81 34.6
FAN12G2758 Fragaria x ananassa HOM05D034259 ORTHO05D005536 3.3e-06 55.1 35 62.9
FAN17G0629 Fragaria x ananassa HOM05D034259 ORTHO05D005536 3.3e-06 55.1 35 62.9
FAN22G1974 Fragaria x ananassa HOM05D034259 ORTHO05D005536 3.3e-06 55.1 35 62.9


User provided reference genes

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