Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7534 Trifolium pratense HOM05D002967 ORTHO05D003281 1.6e-64 249.2 119 100.0
TPR.G5831 Trifolium pratense HOM05D002967 ORTHO05D003281 3.2e-33 145.2 80 87.5
Medtr4g087240 Medicago truncatula HOM05D002967 ORTHO05D003281 1.0e-26 123.6 84 72.6
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.2e-26 122.5 80 71.2
Ca_18644_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 2.2e-26 122.5 80 71.2
arahy.Tifrunner.gnm1.ann1.6YR4L6 Arachis hypogaea HOM05D002967 ORTHO05D003281 3.7e-21 105.1 79 64.6
Psat7g120480 Pisum sativum HOM05D002967 ORTHO05D003281 4.8e-21 104.8 80 65.0
arahy.Tifrunner.gnm1.ann1.A4LE7P Arachis hypogaea HOM05D002967 ORTHO05D003281 6.3e-21 104.4 79 64.6
Lj4g0020084 Lotus japonicus HOM05D002967 ORTHO05D003281 2.6e-19 99.0 80 61.2
Lalb_Chr05g0218911 Lupinus albus HOM05D002967 ORTHO05D003281 2.9e-18 95.5 80 57.5
Glyma.02G136900 Glycine max HOM05D002967 ORTHO05D003281 5.5e-17 91.3 80 58.8
Phvul.003G296100 Phaseolus vulgaris HOM05D002967 ORTHO05D003281 6.7e-15 84.3 78 57.7
VMungo0251G2728 Vigna mungo HOM05D002967 ORTHO05D003281 3.3e-14 82.0 78 57.7
FvH4_2g07200 Fragaria vesca HOM05D002967 ORTHO05D003281 8.2e-13 77.4 64 51.6
FAN15G1887 Fragaria x ananassa HOM05D002967 ORTHO05D003281 8.2e-13 77.4 64 51.6
FAN20G0861 Fragaria x ananassa HOM05D002967 ORTHO05D003281 8.2e-13 77.4 64 51.6
FAN24G3221 Fragaria x ananassa HOM05D002967 ORTHO05D003281 8.2e-13 77.4 64 51.6
QL11p039087 Quercus lobata HOM05D002967 ORTHO05D003281 4.1e-12 75.1 60 51.7
RcHm_v2.0_Chr6g0259631 Rosa chinensis HOM05D002967 ORTHO05D003281 5.3e-12 74.7 69 46.4
Prupe.8G113300 Prunus persica HOM05D002967 ORTHO05D003281 6.9e-12 74.3 65 52.3
Potri.009G108400 Populus trichocarpa HOM05D002967 ORTHO05D003281 9.1e-12 73.9 57 54.4
MD05G1072600 Malus domestica HOM05D002967 ORTHO05D003281 2.0e-11 72.8 51 58.8
Sabra09G0082700 Salix brachista HOM05D002967 ORTHO05D003281 2.0e-11 72.8 57 54.4
GSVIVG01031846001 Vitis vinifera HOM05D002967 ORTHO05D003281 2.6e-11 72.4 65 50.8
SGA_v2.0_scaffold51G18840 Striga asiatica HOM05D002967 ORTHO05D003281 7.7e-11 70.9 54 57.4
Prupe.8G113400 Prunus persica HOM05D002967 ORTHO05D003281 2.2e-10 69.3 51 58.8
BraA01t00183Z Brassica rapa HOM05D002967 ORTHO05D003281 3.8e-10 68.6 56 51.8
MELO3C021926.2 Cucumis melo HOM05D002967 ORTHO05D003281 3.8e-10 68.6 53 56.6
BolC1t00202H Brassica oleracea HOM05D002967 ORTHO05D003281 6.5e-10 67.8 56 51.8
Gohir.A11G189000 Gossypium hirsutum HOM05D002967 ORTHO05D003281 6.5e-10 67.8 46 56.5
arahy.Tifrunner.gnm1.ann1.BKM0WC Arachis hypogaea HOM05D002967 ORTHO05D003281 8.5e-10 67.4 90 36.7
Actinidia27930 Actinidia chinensis HOM05D002967 ORTHO05D003281 1.1e-09 67.0 62 50.0
Hma1.2p1_1353F.1_g277760 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.1e-09 67.0 69 49.3
Hma1.2p1_1353F.1_g277770 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.1e-09 67.0 69 49.3
Hma1.2p1_1527F.1_g289034 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.1e-09 67.0 69 49.3
Hma1.2p1_1527F.1_g289035 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.1e-09 67.0 69 49.3
C01p02100 Brassica napus HOM05D002967 ORTHO05D003281 1.4e-09 66.6 56 50.0
FvH4_1g14770 Fragaria vesca HOM05D002967 ORTHO05D003281 1.4e-09 66.6 45 60.0
FAN19G0299 Fragaria x ananassa HOM05D002967 ORTHO05D003281 1.4e-09 66.6 45 60.0
A01p01940 Brassica napus HOM05D002967 ORTHO05D003281 1.9e-09 66.2 56 50.0
Medtr5g018400 Medicago truncatula HOM05D002967 ORTHO05D003281 1.9e-09 66.2 46 56.5
TAR628G0275 Trochodendron aralioides HOM05D002967 ORTHO05D003281 2.5e-09 65.9 78 38.5
Ca_24803_v3 Cicer arietinum L. HOM05D000235 ORTHO05D003281 3.2e-09 65.5 82 40.2
ECA240G3361 Erigeron canadensis HOM05D002967 ORTHO05D003281 3.2e-09 65.5 39 69.2
Manes.15G144900 Manihot esculenta HOM05D002967 ORTHO05D003281 3.2e-09 65.5 51 54.9
Aa31LG7G13340 Aethionema arabicum HOM05D002967 ORTHO05D003281 4.2e-09 65.1 118 33.9
Carub.0007s0330 Capsella rubella HOM05D002967 ORTHO05D003281 5.5e-09 64.7 81 40.7
Cc00_g04700 Coffea canephora HOM05D002967 ORTHO05D003281 5.5e-09 64.7 47 59.6
CsaV3_2G014250 Cucumis sativus L. HOM05D002967 ORTHO05D003281 7.2e-09 64.3 53 52.8
QL06p043820 Quercus lobata HOM05D002967 ORTHO05D003281 7.2e-09 64.3 84 38.1
TAR376G0613 Trochodendron aralioides HOM05D002967 ORTHO05D003281 7.2e-09 64.3 79 40.5
Lsat_1_v5_gn_9_109060 Lactuca sativa HOM05D002967 ORTHO05D003281 9.4e-09 63.9 39 66.7
GSVIVG01005082001 Vitis vinifera HOM05D002967 ORTHO05D003281 9.4e-09 63.9 46 56.5
Haze_15190 Corylus avellana HOM05D002967 ORTHO05D003281 1.2e-08 63.5 123 34.1
Dinv42113 Davidia involucrata HOM05D002967 ORTHO05D003281 1.2e-08 63.5 41 63.4
Duzib264G0622 Durio zibethinus HOM05D002967 ORTHO05D003281 1.2e-08 63.5 91 36.3
Nn5g29395 Nelumbo nucifera HOM05D002967 ORTHO05D003281 1.2e-08 63.5 44 56.8
Nitab4.5_0000417g0080 Nicotiana tabacum HOM05D002967 ORTHO05D003281 1.2e-08 63.5 52 51.9
RcHm_v2.0_Chr2g0103711 Rosa chinensis HOM05D002967 ORTHO05D003281 1.2e-08 63.5 45 57.8
BcaNung03506 Brassica carinata HOM05D002967 ORTHO05D003281 1.6e-08 63.2 46 54.3
CDE04G1790 Ceratophyllum demersum HOM05D002967 ORTHO05D003281 1.6e-08 63.2 46 56.5
Dinv26755 Davidia involucrata HOM05D002967 ORTHO05D003281 1.6e-08 63.2 55 50.9
Gohir.D11G195500 Gossypium hirsutum HOM05D002967 ORTHO05D003281 1.6e-08 63.2 46 52.2
Gorai.007G209400 Gossypium raimondii HOM05D002967 ORTHO05D003281 1.6e-08 63.2 46 52.2
PSO541G5630 Papaver somniferum HOM05D002967 ORTHO05D003281 1.6e-08 63.2 46 58.7
PSO675G7490 Papaver somniferum HOM05D002967 ORTHO05D003281 1.6e-08 63.2 46 58.7
Psat2g164120 Pisum sativum HOM05D002967 ORTHO05D003281 1.6e-08 63.2 113 31.9
AT4G37110 Arabidopsis thaliana HOM05D002967 ORTHO05D003281 2.1e-08 62.8 82 39.0
Cfa004219 Carpinus fangiana HOM05D002967 ORTHO05D003281 2.1e-08 62.8 91 37.4
Medtr5g018470 Medicago truncatula HOM05D002967 ORTHO05D003281 2.7e-08 62.4 42 59.5
Nitab4.5_0000520g0070 Nicotiana tabacum HOM05D002967 ORTHO05D003281 2.7e-08 62.4 52 50.0
Oeu032933.1 Olea europaea HOM05D002967 ORTHO05D003281 2.7e-08 62.4 91 36.3
TWI73G0117 Tripterygium wilfordii HOM05D002967 ORTHO05D003281 2.7e-08 62.4 91 37.4
Glyma.11G059900 Glycine max HOM05D002967 ORTHO05D003281 3.6e-08 62.0 82 39.0
MBI16_g19888_MAGBIO Magnolia biondii HOM05D002967 ORTHO05D003281 3.6e-08 62.0 41 63.4
Sed0006017 Sechium edule HOM05D002967 ORTHO05D003281 3.6e-08 62.0 53 50.9
SGA_v2.0_scaffold204G41615 Striga asiatica HOM05D002967 ORTHO05D003281 3.6e-08 62.0 67 38.8
Aa31LG6G13870 Aethionema arabicum HOM05D002967 ORTHO05D003281 4.7e-08 61.6 42 57.1
HanXRQChr03g0072111 Helianthus annuus HOM05D002967 ORTHO05D003281 4.7e-08 61.6 54 50.0
Lalb_Chr05g0213121 Lupinus albus HOM05D002967 ORTHO05D003281 4.7e-08 61.6 78 39.7
Os11g0568300 Oryza sativa ssp. japonica HOM05D002967 ORTHO05D003281 4.7e-08 61.6 67 46.3
TPR.G11336 Trifolium pratense HOM05D002967 ORTHO05D003281 4.7e-08 61.6 82 36.6
AL7G13890 Arabidopsis lyrata HOM05D002967 ORTHO05D003281 6.1e-08 61.2 51 47.1
CARHR293140 Cardamine hirsuta HOM05D002967 ORTHO05D003281 6.1e-08 61.2 78 38.5
ClCG02G013140 Citrullus lanatus HOM05D002967 ORTHO05D003281 6.1e-08 61.2 46 50.0
MELO3C020926.2 Cucumis melo HOM05D002967 ORTHO05D003281 6.1e-08 61.2 46 50.0
FAN28G1129 Fragaria x ananassa HOM05D002967 ORTHO05D003281 6.1e-08 61.2 45 55.6
Hma1.2p1_0261F.1_g105110 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 6.1e-08 61.2 49 51.0
SalBow8G2386 Salvia bowleyana HOM05D002967 ORTHO05D003281 6.1e-08 61.2 71 47.9
Sp7g34660 Schrenkiella parvula HOM05D002967 ORTHO05D003281 6.1e-08 61.2 46 52.2
TWI79G0973 Tripterygium wilfordii HOM05D002967 ORTHO05D003281 6.1e-08 61.2 55 50.9
vmacro17899 Vaccinium macrocarpon HOM05D002967 ORTHO05D003281 6.1e-08 61.2 42 57.1
Cpa.g.sc15.95 Carica papaya HOM05D002967 ORTHO05D003281 7.9e-08 60.8 84 36.9
Cc07_g05530 Coffea canephora HOM05D002967 ORTHO05D003281 7.9e-08 60.8 79 36.7
Duzib132G0764 Durio zibethinus HOM05D002967 ORTHO05D003281 7.9e-08 60.8 46 52.2
Glyma.01G181700 Glycine max HOM05D002967 ORTHO05D003281 7.9e-08 60.8 78 41.0
Prupe.7G142700 Prunus persica HOM05D002967 ORTHO05D003281 7.9e-08 60.8 68 42.6
CDE07G0802 Ceratophyllum demersum HOM05D002967 ORTHO05D003281 1.0e-07 60.5 46 54.3
Ciclev10025387m.g Citrus clementina HOM05D002967 ORTHO05D003281 1.0e-07 60.5 102 33.3
Migut.H02541 Erythranthe guttata HOM05D002967 ORTHO05D003281 1.0e-07 60.5 55 52.7
Lalb_Chr09g0322901 Lupinus albus HOM05D002967 ORTHO05D003281 1.0e-07 60.5 82 36.6
PGR102G1475 Punica granatum HOM05D002967 ORTHO05D003281 1.0e-07 60.5 110 31.8
SEGI_24787 Sequoiadendron giganteum HOM05D002967 ORTHO05D003281 1.0e-07 60.5 77 40.3
PGSC0003DMG400010028 Solanum tuberosum HOM05D002967 ORTHO05D003281 1.0e-07 60.5 68 39.7
CSS0004019 Camellia sinensis var. sinensis HOM05D002967 ORTHO05D003281 1.4e-07 60.1 71 45.1
CSS0044282 Camellia sinensis var. sinensis HOM05D002967 ORTHO05D003281 1.4e-07 60.1 72 37.5
CARHR245410 Cardamine hirsuta HOM05D002967 ORTHO05D003281 1.4e-07 60.1 51 51.0
Lj4A137T59 Lonicera japonica HOM05D002967 ORTHO05D003281 1.4e-07 60.1 46 50.0
Pp3c5_6750 Physcomitrium patens HOM05D002967 ORTHO05D003281 1.4e-07 60.1 51 51.0
Rhsim08G0106600 Rhododendron simsii HOM05D002967 ORTHO05D003281 1.4e-07 60.1 52 50.0
Sp4g02500 Schrenkiella parvula HOM05D002967 ORTHO05D003281 1.4e-07 60.1 76 38.2
Solyc02g090200.3 Solanum lycopersicum HOM05D002967 ORTHO05D003281 1.4e-07 60.1 68 38.2
Sopen02g034890 Solanum pennellii HOM05D002967 ORTHO05D003281 1.4e-07 60.1 68 38.2
THA.LOC104819826 Tarenaya hassleriana HOM05D002967 ORTHO05D003281 1.4e-07 60.1 102 35.3
VMungo1215G3450 Vigna mungo HOM05D002967 ORTHO05D003281 1.4e-07 60.1 82 36.6
Atru.chr3.451 Acer truncatum HOM05D002967 ORTHO05D003281 1.8e-07 59.7 95 35.8
A04p17930 Brassica napus HOM05D002967 ORTHO05D003281 1.8e-07 59.7 42 52.4
C04p52840 Brassica napus HOM05D002967 ORTHO05D003281 1.8e-07 59.7 42 52.4
BolC4t26849H Brassica oleracea HOM05D002967 ORTHO05D003281 1.8e-07 59.7 42 52.4
BraA04t17413Z Brassica rapa HOM05D002967 ORTHO05D003281 1.8e-07 59.7 42 52.4
CAN.G836.30 Capsicum annuum HOM05D002967 ORTHO05D003281 1.8e-07 59.7 66 39.4
ECA246G5182 Erigeron canadensis HOM05D002967 ORTHO05D003281 1.8e-07 59.7 46 52.2
Eucgr.H01969 Eucalyptus grandis HOM05D002967 ORTHO05D003281 1.8e-07 59.7 46 56.5
FAN26G2244 Fragaria x ananassa HOM05D002967 ORTHO05D003281 1.8e-07 59.7 45 53.3
MD10G1087200 Malus domestica HOM05D002967 ORTHO05D003281 1.8e-07 59.7 54 50.0
Peaxi162Scf00651g00210 Petunia axillaris HOM05D002967 ORTHO05D003281 1.8e-07 59.7 39 61.5
Thecc.01G047700 Theobroma cacao HOM05D002967 ORTHO05D003281 1.8e-07 59.7 46 50.0
TPR.G11359 Trifolium pratense HOM05D002967 ORTHO05D003281 1.8e-07 59.7 46 50.0
Zm00001eb200060 Zea mays HOM05D002967 ORTHO05D003281 1.8e-07 59.7 52 48.1
AL4G13520 Arabidopsis lyrata HOM05D002967 ORTHO05D003281 2.3e-07 59.3 78 37.2
CiPaw.01G026800 Carya illinoinensis HOM05D002967 ORTHO05D003281 2.3e-07 59.3 46 50.0
CsaV3_2G017230 Cucumis sativus L. HOM05D002967 ORTHO05D003281 2.3e-07 59.3 44 50.0
Thhalv10025333m.g Eutrema salsugineum HOM05D002967 ORTHO05D003281 2.3e-07 59.3 52 46.2
HanXRQChr03g0072121 Helianthus annuus HOM05D002967 ORTHO05D003281 2.3e-07 59.3 39 61.5
MD02G1160900 Malus domestica HOM05D002967 ORTHO05D003281 2.3e-07 59.3 50 54.0
Nitab4.5_0000108g0270 Nicotiana tabacum HOM05D002967 ORTHO05D003281 2.3e-07 59.3 68 38.2
Phvul.002G022700 Phaseolus vulgaris HOM05D002967 ORTHO05D003281 2.3e-07 59.3 91 38.5
SalBow8G5019 Salvia bowleyana HOM05D002967 ORTHO05D003281 2.3e-07 59.3 39 66.7
Aqoxy5G01410 Aquilegia oxysepala HOM05D002967 ORTHO05D003281 3.0e-07 58.9 42 57.1
Carub.0004s0275 Capsella rubella HOM05D002967 ORTHO05D003281 3.0e-07 58.9 78 37.2
CAN.G107.16 Capsicum annuum HOM05D002967 ORTHO05D003281 3.0e-07 58.9 65 43.1
AUR62003826 Chenopodium quinoa HOM05D002967 ORTHO05D003281 3.0e-07 58.9 60 43.3
Migut.H00488 Erythranthe guttata HOM05D002967 ORTHO05D003281 3.0e-07 58.9 41 56.1
FAN23G1223 Fragaria x ananassa HOM05D002967 ORTHO05D003281 3.0e-07 58.9 45 53.3
Nitab4.5_0001014g0110 Nicotiana tabacum HOM05D002967 ORTHO05D003281 3.0e-07 58.9 68 36.8
Lj2g0010753 Lotus japonicus HOM05D002967 ORTHO05D003281 3.9e-07 58.5 115 29.6
Sabra07G0031600 Salix brachista HOM05D002967 ORTHO05D003281 3.9e-07 58.5 110 31.8
SMO287G0013 Selaginella moellendorffii HOM05D002967 ORTHO05D003281 3.9e-07 58.5 62 45.2
unitig_899.g14649 Utricularia gibba HOM05D002967 ORTHO05D003281 3.9e-07 58.5 55 47.3
CANSAT01G1694 Cannabis sativa HOM05D002967 ORTHO05D003281 5.1e-07 58.2 62 41.9
Lsat_1_v5_gn_3_92201 Lactuca sativa HOM05D002967 ORTHO05D003281 5.1e-07 58.2 48 47.9
Lj9C364G10 Lonicera japonica HOM05D002967 ORTHO05D003281 5.1e-07 58.2 69 47.8
RhsimUnG0104900 Rhododendron simsii HOM05D002967 ORTHO05D003281 5.1e-07 58.2 52 50.0
Zm00001eb114140 Zea mays HOM05D002967 ORTHO05D003281 5.1e-07 58.2 49 55.1
Potri.007G036200 Populus trichocarpa HOM05D002967 ORTHO05D003281 6.7e-07 57.8 110 31.8
Sc03g0001250 Simmondsia chinensis HOM05D002967 ORTHO05D003281 6.7e-07 57.8 43 51.2
PGSC0003DMG400011552 Solanum tuberosum HOM05D002967 ORTHO05D003281 6.7e-07 57.8 52 48.1
PGSC0003DMG400011554 Solanum tuberosum HOM05D002967 ORTHO05D003281 6.7e-07 57.8 52 48.1
Zm00001eb241200 Zea mays HOM05D000173 ORTHO05D003281 6.7e-07 57.8 49 53.1
MSTRG.2914 Avicennia marina HOM05D002967 ORTHO05D003281 8.8e-07 57.4 41 56.1
HanXRQChr12g0361041 Helianthus annuus HOM05D002967 ORTHO05D003281 8.8e-07 57.4 46 50.0
MD15G1275000 Malus domestica HOM05D002967 ORTHO05D003281 8.8e-07 57.4 42 54.8
Manes.13G130500 Manihot esculenta HOM05D002967 ORTHO05D003281 8.8e-07 57.4 44 50.0
Solyc12g088480.2 Solanum lycopersicum HOM05D002967 ORTHO05D003281 8.8e-07 57.4 39 59.0
Ah.02g123930 Amaranthus hybridus HOM05D002967 ORTHO05D003281 1.1e-06 57.0 84 38.1
ATR0733G124 Amborella trichopoda HOM05D002967 ORTHO05D003281 1.1e-06 57.0 52 50.0
AT2G23530 Arabidopsis thaliana HOM05D002967 ORTHO05D003281 1.1e-06 57.0 41 51.2
AUR62001978 Chenopodium quinoa HOM05D002967 ORTHO05D003281 1.1e-06 57.0 60 41.7
CAN.G107.37 Capsicum annuum HOM05D002967 ORTHO05D003281 2.0e-06 56.2 39 61.5
DCAR_025685 Daucus carota HOM05D002967 ORTHO05D003281 2.0e-06 56.2 43 53.5
Sed0026248 Sechium edule HOM05D002967 ORTHO05D003281 2.0e-06 56.2 42 47.6
Ah.03g144020 Amaranthus hybridus HOM05D002967 ORTHO05D003281 2.6e-06 55.8 46 50.0
SalBow1G6871 Salvia bowleyana HOM05D002967 ORTHO05D003281 3.3e-06 55.5 69 39.1
Sopen12g030460 Solanum pennellii HOM05D002967 ORTHO05D003281 3.3e-06 55.5 39 56.4
Hund06199 Selenicereus undatus HOM05D002967 ORTHO05D003281 4.4e-06 55.1 39 56.4
Mapoly0033s0025 Marchantia polymorpha HOM05D002967 ORTHO05D003281 5.7e-06 54.7 103 33.0
Dinv39908 Davidia involucrata HOM05D002967 ORTHO05D003281 7.4e-06 54.3 93 32.3


User provided reference genes

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