Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 1.1e-74 283.1 137 100.0
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 1.3e-70 269.6 137 95.6
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 3.8e-70 268.1 137 94.9
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 1.2e-68 263.1 137 92.7
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.5e-63 246.1 137 86.1
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 2.0e-63 245.7 137 86.9
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 6.4e-62 240.7 137 83.2
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 1.4e-61 239.6 137 82.5
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 7.1e-61 237.3 137 83.9
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.2e-60 236.5 137 84.7
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 1.2e-60 236.5 137 81.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.6e-60 236.1 137 84.7
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 1.3e-59 233.0 137 79.6
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.3e-57 226.5 137 79.6
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 2.8e-57 225.3 137 78.8
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 4.8e-57 224.6 137 77.4
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 4.8e-57 224.6 137 78.8
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 8.2e-57 223.8 138 79.7
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 5.3e-56 221.1 137 78.1
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 1.5e-55 219.5 137 76.6
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 2.6e-55 218.8 137 76.6
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 2.6e-55 218.8 137 76.6
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 5.8e-55 217.6 137 77.4
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 7.6e-55 217.2 138 75.4
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 4.9e-54 214.5 137 80.3
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 1.4e-53 213.0 137 74.5
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 1.6e-52 209.5 137 71.5
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 3.5e-52 208.4 137 75.9
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.8e-51 206.1 137 71.5
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 3.0e-51 205.3 137 72.3
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 3.0e-51 205.3 137 70.8
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 3.0e-51 205.3 137 73.0
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 3.9e-51 204.9 137 72.3
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 5.1e-51 204.5 137 73.0
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 6.7e-51 204.1 137 72.3
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 6.7e-51 204.1 137 73.7
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 8.7e-51 203.8 137 70.8
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 1.1e-50 203.4 137 73.0
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.5e-50 203.0 137 73.0
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 1.5e-50 203.0 137 67.2
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 2.5e-50 202.2 138 68.1
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 2.5e-50 202.2 137 71.5
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 3.3e-50 201.8 138 72.5
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 3.3e-50 201.8 137 69.3
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 4.3e-50 201.4 138 71.7
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 7.4e-50 200.7 137 71.5
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 9.7e-50 200.3 137 68.6
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 9.7e-50 200.3 137 71.5
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 1.6e-49 199.5 137 73.0
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 2.2e-49 199.1 137 71.5
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 4.8e-49 198.0 137 70.1
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 4.1e-48 194.9 137 69.3
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 5.3e-48 194.5 126 75.4
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 6.9e-48 194.1 137 68.6
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 6.9e-48 194.1 137 68.6
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 6.9e-48 194.1 137 69.3
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.2e-47 193.4 137 65.0
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.2e-47 193.4 137 70.8
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.2e-47 193.4 137 67.2
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 1.2e-47 193.4 137 67.9
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 1.5e-47 193.0 125 78.4
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.5e-47 193.0 137 70.8
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 4.5e-47 191.4 137 65.0
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.7e-46 189.5 137 65.7
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 1.7e-46 189.5 137 65.7
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 2.9e-46 188.7 126 72.2
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.1e-45 186.8 137 65.0
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 1.1e-45 186.8 124 72.6
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 1.9e-45 186.0 126 71.4
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 4.2e-45 184.9 138 65.9
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 5.5e-45 184.5 137 65.7
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.2e-45 184.1 137 63.5
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 9.4e-45 183.7 137 65.7
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-44 183.3 137 65.7
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-44 183.3 137 65.7
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 1.2e-44 183.3 137 66.4
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.2e-44 183.3 136 64.0
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 1.6e-44 183.0 137 65.0
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 1.6e-44 183.0 137 67.2
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 1.6e-44 183.0 137 65.0
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 2.1e-44 182.6 137 65.7
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 2.7e-44 182.2 137 64.2
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 4.6e-44 181.4 127 69.3
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 6.1e-44 181.0 137 66.4
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 6.1e-44 181.0 138 65.9
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 6.1e-44 181.0 137 65.7
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 1.0e-43 180.3 137 62.8
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 2.3e-43 179.1 117 72.6
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 2.0e-42 176.0 121 70.2
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 2.0e-42 176.0 137 62.8
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 1.3e-41 173.3 137 62.0
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 2.2e-41 172.6 138 59.4
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 2.8e-41 172.2 137 59.1
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 2.8e-41 172.2 113 73.5
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 3.1e-40 168.7 139 58.3
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 1.2e-39 166.8 126 64.3
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.4e-39 165.2 127 63.8
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 6.5e-38 161.0 139 58.3
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 6.5e-38 161.0 137 62.0
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 2.1e-36 156.0 114 63.2
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 2.1e-36 156.0 113 61.1
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 4.7e-36 154.8 121 64.5
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 4.7e-36 154.8 125 58.4
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 7.9e-36 154.1 107 72.9
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 3.9e-35 151.8 107 72.0
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 2.2e-33 146.0 146 52.1
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 4.5e-31 138.3 102 68.6
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 9.4e-29 130.6 143 44.8
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.8e-27 126.3 105 61.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 1.8e-27 126.3 93 57.0
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 8.8e-27 124.0 147 44.9
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 1.5e-26 123.2 105 57.1
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 3.3e-26 122.1 105 59.0
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 2.2e-25 119.4 114 55.3
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 4.8e-25 118.2 93 61.3
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 4.5e-23 111.7 105 53.3
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 5.5e-21 104.8 91 59.3
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 3.6e-20 102.1 82 63.4
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 7.0e-16 87.8 97 43.3
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 9.1e-16 87.4 58 70.7
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 1.0e-14 84.0 96 47.9
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 4.4e-10 68.6 46 69.6
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 3.7e-09 65.5 55 50.9
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 1.0e-06 57.4 84 34.5


User provided reference genes

Program Settings