Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7500 Trifolium pratense HOM05D000960 ORTHO05D000683 1.4e-81 306.2 157 100.0
Medtr6g022230 Medicago truncatula HOM05D000960 ORTHO05D000683 1.8e-44 183.0 120 80.0
Psat1g083320 Pisum sativum HOM05D000960 ORTHO05D000683 3.0e-39 165.6 120 74.2
Ca_04397_v3 Cicer arietinum L. HOM05D000960 ORTHO05D000683 3.7e-37 158.7 120 72.5
Glyma.19G055400 Glycine max HOM05D000960 ORTHO05D000683 1.8e-28 129.8 120 64.2
Glyma.05G072200 Glycine max HOM05D000960 ORTHO05D000683 8.5e-26 120.9 115 63.5
Phvul.004G058100 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 8.5e-26 120.9 120 62.5
VMungo0464G0206 Vigna mungo HOM05D000960 ORTHO05D000683 7.2e-25 117.9 121 59.5
Lalb_Chr02g0157991 Lupinus albus HOM05D000960 ORTHO05D000683 9.8e-22 107.5 114 54.4
CiPaw.03G049500 Carya illinoinensis HOM05D000960 ORTHO05D000683 1.4e-20 103.6 120 52.5
Lalb_Chr21g0317641 Lupinus albus HOM05D000960 ORTHO05D000683 1.7e-18 96.7 116 50.9
Dinv25703 Davidia involucrata HOM05D000960 ORTHO05D000683 2.9e-18 95.9 122 50.0
Glyma.16G064000 Glycine max HOM05D000960 ORTHO05D000683 6.5e-18 94.7 119 53.8
QL02p073263 Quercus lobata HOM05D000960 ORTHO05D000683 4.2e-17 92.0 118 48.3
Atru.chr3.2442 Acer truncatum HOM05D000960 ORTHO05D000683 1.6e-16 90.1 137 44.5
TWI36G1777 Tripterygium wilfordii HOM05D000960 ORTHO05D000683 8.0e-16 87.8 131 44.3
COL.COLO4_29259 Corchorus olitorius HOM05D000960 ORTHO05D000683 1.4e-15 87.0 134 44.0
CANSAT64G2593 Cannabis sativa HOM05D000960 ORTHO05D000683 4.0e-15 85.5 113 46.9
Phvul.008G146700 Phaseolus vulgaris HOM05D000960 ORTHO05D000683 5.2e-15 85.1 119 51.3
CiPaw.04G032400 Carya illinoinensis HOM05D000960 ORTHO05D000683 1.5e-14 83.6 91 52.7
Ciclev10014952m.g Citrus clementina HOM05D000960 ORTHO05D000683 2.6e-14 82.8 133 45.1
Potri.001G336300 Populus trichocarpa HOM05D000960 ORTHO05D000683 2.6e-14 82.8 139 41.7
arahy.Tifrunner.gnm1.ann1.2V6C5Z Arachis hypogaea HOM05D000960 ORTHO05D000683 3.4e-14 82.4 128 46.1
GSVIVG01003969001 Vitis vinifera HOM05D000960 ORTHO05D000683 3.4e-14 82.4 129 41.1
Gohir.A07G225200 Gossypium hirsutum HOM05D000960 ORTHO05D000683 4.4e-14 82.0 134 44.8
arahy.Tifrunner.gnm1.ann1.C5JWME Arachis hypogaea HOM05D000960 ORTHO05D000683 9.8e-14 80.9 122 47.5
arahy.Tifrunner.gnm1.ann1.N991H8 Arachis hypogaea HOM05D000960 ORTHO05D000683 1.3e-13 80.5 128 45.3
Duzib264G1066 Durio zibethinus HOM05D000960 ORTHO05D000683 1.3e-13 80.5 133 42.1
Gohir.D07G232400 Gossypium hirsutum HOM05D000960 ORTHO05D000683 1.3e-13 80.5 135 43.7
Prupe.3G298700 Prunus persica HOM05D000960 ORTHO05D000683 1.7e-13 80.1 117 47.9
MD17G1019000 Malus domestica HOM05D000960 ORTHO05D000683 2.2e-13 79.7 117 47.9
Manes.15G155600 Manihot esculenta HOM05D000960 ORTHO05D000683 2.2e-13 79.7 132 40.9
Gorai.001G267600 Gossypium raimondii HOM05D000960 ORTHO05D000683 2.8e-13 79.3 135 43.0
Nn4g22466 Nelumbo nucifera HOM05D000960 ORTHO05D000683 2.8e-13 79.3 113 39.8
arahy.Tifrunner.gnm1.ann1.EKVU09 Arachis hypogaea HOM05D000960 ORTHO05D000683 6.3e-13 78.2 128 45.3
Nitab4.5_0005414g0030 Nicotiana tabacum HOM05D000960 ORTHO05D000683 8.3e-13 77.8 117 42.7
CAN.G1057.21 Capsicum annuum HOM05D000960 ORTHO05D000683 1.1e-12 77.4 115 42.6
Lj2g0008797 Lotus japonicus HOM05D000960 ORTHO05D000683 1.1e-12 77.4 61 70.5
CSS0021929 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 1.8e-12 76.6 115 44.3
arahy.Tifrunner.gnm1.ann1.M5ZV1Q Arachis hypogaea HOM05D000960 ORTHO05D000683 2.4e-12 76.3 110 45.5
CSS0003654 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 2.4e-12 76.3 117 44.4
CSS0033462 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 2.4e-12 76.3 117 44.4
Actinidia05949 Actinidia chinensis HOM05D000960 ORTHO05D000683 5.4e-12 75.1 114 45.6
Thecc.04G026100 Theobroma cacao HOM05D000960 ORTHO05D000683 7.0e-12 74.7 139 40.3
TAR629G0352 Trochodendron aralioides HOM05D000960 ORTHO05D000683 7.0e-12 74.7 112 42.0
Aqoxy5G03590 Aquilegia oxysepala HOM05D000960 ORTHO05D000683 9.2e-12 74.3 113 38.9
CSS0011882 Camellia sinensis var. sinensis HOM05D000960 ORTHO05D000683 9.2e-12 74.3 115 43.5
Solyc02g067950.4 Solanum lycopersicum HOM05D000960 ORTHO05D000683 1.2e-11 73.9 115 42.6
vmacro05910 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 1.6e-11 73.6 119 42.9
MELO3C021615.2 Cucumis melo HOM05D000960 ORTHO05D000683 2.7e-11 72.8 115 46.1
ClCG09G019580 Citrullus lanatus HOM05D000960 ORTHO05D000683 3.5e-11 72.4 115 45.2
Sopen02g017080 Solanum pennellii HOM05D000960 ORTHO05D000683 3.5e-11 72.4 115 40.9
PGSC0003DMG400006967 Solanum tuberosum HOM05D000960 ORTHO05D000683 3.5e-11 72.4 115 41.7
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 4.5e-11 72.0 112 43.8
FvH4_6g52400 Fragaria vesca HOM05D000960 ORTHO05D000683 5.9e-11 71.6 112 43.8
Lj1g0003368 Lotus japonicus HOM05D000960 ORTHO05D000683 7.8e-11 71.2 116 46.6
Nitab4.5_0000040g0500 Nicotiana tabacum HOM05D000960 ORTHO05D000683 7.8e-11 71.2 119 39.5
Cc07_g00330 Coffea canephora HOM05D035624 ORTHO05D000683 1.0e-10 70.9 150 39.3
Sed0010444 Sechium edule HOM05D000960 ORTHO05D000683 1.7e-10 70.1 138 39.1
HanXRQChr09g0255771 Helianthus annuus HOM05D000960 ORTHO05D000683 5.0e-10 68.6 116 42.2
MBI06_g17102_MAGBIO Magnolia biondii HOM05D000960 ORTHO05D000683 6.6e-10 68.2 139 36.0
PGSC0003DMG400012646 Solanum tuberosum HOM05D000960 ORTHO05D000683 6.6e-10 68.2 106 37.7
TAR371G0280 Trochodendron aralioides HOM05D000960 ORTHO05D000683 6.6e-10 68.2 110 40.0
CAN.G473.51 Capsicum annuum HOM05D000960 ORTHO05D000683 8.6e-10 67.8 101 40.6
Rhsim10G0012200 Rhododendron simsii HOM05D000960 ORTHO05D000683 8.6e-10 67.8 113 41.6
Sopen02g038360 Solanum pennellii HOM05D000960 ORTHO05D000683 8.6e-10 67.8 106 37.7
CsaV3_5G026790 Cucumis sativus L. HOM05D000960 ORTHO05D000683 1.9e-09 66.6 114 43.9
ECA232G3456 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.9e-09 66.6 136 36.0
SalBow7G1427 Salvia bowleyana HOM05D000960 ORTHO05D000683 1.9e-09 66.6 118 43.2
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 3.3e-09 65.9 114 43.0
Eucgr.J02275 Eucalyptus grandis HOM05D000960 ORTHO05D000683 4.3e-09 65.5 115 39.1
Oeu050442.1 Olea europaea HOM05D000960 ORTHO05D000683 4.3e-09 65.5 116 42.2
Peaxi162Scf00420g00252 Petunia axillaris HOM05D000960 ORTHO05D000683 4.3e-09 65.5 85 43.5
Nn3g16583 Nelumbo nucifera HOM05D000960 ORTHO05D000683 5.6e-09 65.1 127 33.9
Actinidia15132 Actinidia chinensis HOM05D000960 ORTHO05D000683 7.3e-09 64.7 114 41.2
PGR142G3109 Punica granatum HOM05D000960 ORTHO05D000683 9.5e-09 64.3 128 39.1
Manes.17G108100 Manihot esculenta HOM05D000960 ORTHO05D000683 2.1e-08 63.2 112 42.9
SalBow1G6705 Salvia bowleyana HOM05D000960 ORTHO05D000683 2.1e-08 63.2 123 35.0
Solyc02g093720.3 Solanum lycopersicum HOM05D000960 ORTHO05D000683 2.1e-08 63.2 106 40.6
Migut.K01433 Erythranthe guttata HOM05D000960 ORTHO05D000683 2.8e-08 62.8 130 36.9
vmacro18310 Vaccinium macrocarpon HOM05D000960 ORTHO05D000683 3.6e-08 62.4 116 40.5
TWI56G0845 Tripterygium wilfordii HOM05D000960 ORTHO05D000683 6.1e-08 61.6 100 38.0
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 1.8e-07 60.1 100 41.0
MSTRG.3271 Avicennia marina HOM05D000960 ORTHO05D000683 2.3e-07 59.7 133 35.3
Cpa.g.sc130.49 Carica papaya HOM05D000960 ORTHO05D000683 2.3e-07 59.7 69 47.8
Dinv14778 Davidia involucrata HOM05D000960 ORTHO05D000683 2.3e-07 59.7 113 35.4
Nitab4.5_0001031g0140 Nicotiana tabacum HOM05D000960 ORTHO05D000683 2.3e-07 59.7 85 44.7
Peaxi162Scf00080g01719 Petunia axillaris HOM05D000960 ORTHO05D000683 3.0e-07 59.3 101 36.6
Oeu054663.1 Olea europaea HOM05D000960 ORTHO05D000683 4.0e-07 58.9 121 38.0
MSTRG.15549 Avicennia marina HOM05D000960 ORTHO05D000683 5.2e-07 58.5 122 38.5
MD09G1018500 Malus domestica HOM05D000960 ORTHO05D000683 6.8e-07 58.2 112 43.8
Lj7A605T78 Lonicera japonica HOM05D000960 ORTHO05D000683 8.9e-07 57.8 64 51.6
Nitab4.5_0001863g0190 Nicotiana tabacum HOM05D000960 ORTHO05D000683 8.9e-07 57.8 55 56.4
DCAR_021754 Daucus carota HOM05D000960 ORTHO05D000683 1.5e-06 57.0 115 34.8
HanXRQChr15g0487131 Helianthus annuus HOM05D000960 ORTHO05D000683 1.5e-06 57.0 135 34.1
Actinidia36154 Actinidia chinensis HOM05D000960 ORTHO05D000683 2.6e-06 56.2 53 56.6
Rhsim08G0046400 Rhododendron simsii HOM05D000960 ORTHO05D000683 3.4e-06 55.8 85 43.5
unitig_747.g21865 Utricularia gibba HOM05D000960 ORTHO05D000683 3.4e-06 55.8 86 40.7
CANSAT64G0079 Cannabis sativa HOM05D000778 ORTHO05D000601 4.4e-06 55.5 87 40.2
PGR083G1841 Punica granatum HOM05D000960 ORTHO05D000683 5.8e-06 55.1 112 34.8
Lsat_1_v5_gn_4_184720 Lactuca sativa HOM05D000960 ORTHO05D000683 7.5e-06 54.7 114 35.1


User provided reference genes

Program Settings