Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G750 Trifolium pratense HOM05D003413 ORTHO05D029074 1.0e-51 206.5 104 100.0
Ca_24508_v3 Cicer arietinum L. HOM05D003413 ORTHO05D004197 4.6e-36 154.5 81 93.8
Psat0s14g0120 Pisum sativum HOM05D003413 ORTHO05D004197 4.6e-36 154.5 81 93.8
Lj1g0010419 Lotus japonicus HOM05D003413 ORTHO05D004197 1.6e-33 146.0 81 86.4
Glyma.06G171200 Glycine max HOM05D003413 ORTHO05D004197 4.8e-33 144.4 81 87.7
Medtr3g089040 Medicago truncatula HOM05D003413 ORTHO05D004197 1.4e-32 142.9 79 89.9
Phvul.009G167300 Phaseolus vulgaris HOM05D003413 ORTHO05D004197 1.8e-32 142.5 81 87.7
Glyma.04G194700 Glycine max HOM05D003413 ORTHO05D004197 2.4e-32 142.1 81 87.7
arahy.Tifrunner.gnm1.ann1.DD2PIM Arachis hypogaea HOM05D003413 ORTHO05D004197 1.2e-31 139.8 81 85.2
VMungo1309G0564 Vigna mungo HOM05D003413 ORTHO05D004197 2.0e-31 139.0 85 84.7
arahy.Tifrunner.gnm1.ann1.R6HZSL Arachis hypogaea HOM05D003413 ORTHO05D004197 7.6e-31 137.1 81 82.7
arahy.Tifrunner.gnm1.ann1.3BP915 Arachis hypogaea HOM05D001045 ORTHO05D004836 4.9e-30 134.4 84 81.0
Lalb_Chr07g0183311 Lupinus albus HOM05D003413 ORTHO05D004197 4.2e-29 131.3 81 81.5
Lalb_Chr12g0202151 Lupinus albus HOM05D003413 ORTHO05D004197 2.7e-28 128.6 81 80.2
Thecc.02G276700 Theobroma cacao HOM05D003413 ORTHO05D004197 3.3e-26 121.7 81 77.8
GSVIVG01010375001 Vitis vinifera HOM05D003413 ORTHO05D004197 4.3e-26 121.3 81 76.5
Sp2g15490 Schrenkiella parvula HOM05D003413 ORTHO05D004197 7.4e-26 120.6 90 71.1
CSS0015662 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 9.6e-26 120.2 83 74.7
MBI04_g08407_MAGBIO Magnolia biondii HOM05D003413 ORTHO05D004197 9.6e-26 120.2 82 74.4
CiPaw.06G100800 Carya illinoinensis HOM05D003413 ORTHO05D004197 1.3e-25 119.8 81 75.3
Gohir.D04G181800 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.3e-25 119.8 81 75.3
Gohir.A01G160500 Gossypium hirsutum HOM05D003413 ORTHO05D004197 1.6e-25 119.4 81 76.5
Gohir.D01G155200 Gossypium hirsutum HOM05D003413 ORTHO05D004197 2.1e-25 119.0 81 76.5
Gorai.002G192400 Gossypium raimondii HOM05D003413 ORTHO05D004197 2.8e-25 118.6 81 76.5
MD10G1030600 Malus domestica HOM05D003413 ORTHO05D004197 3.7e-25 118.2 82 74.4
Gohir.A04G138900 Gossypium hirsutum HOM05D003413 ORTHO05D004197 4.8e-25 117.9 81 74.1
Gorai.012G175200 Gossypium raimondii HOM05D003413 ORTHO05D004197 4.8e-25 117.9 81 74.1
Manes.12G013500 Manihot esculenta HOM05D003413 ORTHO05D004197 4.8e-25 117.9 81 76.5
Sed0004676 Sechium edule HOM05D003413 ORTHO05D004197 8.2e-25 117.1 81 74.1
Cpa.g.sc43.24 Carica papaya HOM05D003413 ORTHO05D004197 1.1e-24 116.7 81 75.3
AUR62005593 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.1e-24 116.7 81 74.1
AUR62024135 Chenopodium quinoa HOM05D003413 ORTHO05D004197 1.1e-24 116.7 81 74.1
CSS0027762 Camellia sinensis var. sinensis HOM05D003413 ORTHO05D004197 1.4e-24 116.3 81 74.1
Sed0019386 Sechium edule HOM05D003413 ORTHO05D004197 1.4e-24 116.3 82 75.6
CANSAT01G2316 Cannabis sativa HOM05D003413 ORTHO05D004197 1.8e-24 115.9 81 72.8
ClCG08G010150 Citrullus lanatus HOM05D003413 ORTHO05D004197 1.8e-24 115.9 81 74.1
Cfa020602 Carpinus fangiana HOM05D003413 ORTHO05D004197 2.4e-24 115.5 81 72.8
Duzib268G0982 Durio zibethinus HOM05D003413 ORTHO05D004197 2.4e-24 115.5 81 72.8
Sp1g11610 Schrenkiella parvula HOM05D003413 ORTHO05D004197 3.1e-24 115.2 83 73.5
BcaB08g34231 Brassica carinata HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
BcaNung06606 Brassica carinata HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
A08p32480 Brassica napus HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
A09p63450 Brassica napus HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
C08p46910 Brassica napus HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
BolC8t49206H Brassica oleracea HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
BolC8t52226H Brassica oleracea HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
BraA06t24062Z Brassica rapa HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
BraA08t35172Z Brassica rapa HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
BraA09t41695Z Brassica rapa HOM05D003413 ORTHO05D004197 4.1e-24 114.8 83 73.5
Haze_12385 Corylus avellana HOM05D003413 ORTHO05D004197 4.1e-24 114.8 81 72.8
Duzib251G0571 Durio zibethinus HOM05D003413 ORTHO05D004197 4.1e-24 114.8 81 74.1
HanXRQChr12g0372411 Helianthus annuus HOM05D003413 ORTHO05D004197 4.1e-24 114.8 96 65.6
QL04p035333 Quercus lobata HOM05D003413 ORTHO05D004197 4.1e-24 114.8 82 76.8
vmacro01074 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 4.1e-24 114.8 93 66.7
A06p08660 Brassica napus HOM05D003413 ORTHO05D004197 5.3e-24 114.4 83 72.3
C08p15800 Brassica napus HOM05D003413 ORTHO05D004197 5.3e-24 114.4 83 73.5
Cfa009337 Carpinus fangiana HOM05D003413 ORTHO05D004197 5.3e-24 114.4 81 72.8
ClCG11G013810 Citrullus lanatus HOM05D003413 ORTHO05D004197 5.3e-24 114.4 83 73.5
Thhalv10008454m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 5.3e-24 114.4 83 73.5
Aa31LG2G6170 Aethionema arabicum HOM05D003413 ORTHO05D004197 6.9e-24 114.0 83 71.1
CiPaw.05G112700 Carya illinoinensis HOM05D003413 ORTHO05D004197 6.9e-24 114.0 81 71.6
Manes.13G017700 Manihot esculenta HOM05D003413 ORTHO05D004197 6.9e-24 114.0 81 74.1
BcaC05g25088 Brassica carinata HOM05D003413 ORTHO05D004197 9.0e-24 113.6 83 72.3
C05p10270 Brassica napus HOM05D003413 ORTHO05D004197 9.0e-24 113.6 83 72.3
CARHR147350 Cardamine hirsuta HOM05D003413 ORTHO05D004197 9.0e-24 113.6 83 71.1
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 9.0e-24 113.6 81 71.6
Prupe.1G229300 Prunus persica HOM05D003413 ORTHO05D004197 9.0e-24 113.6 81 71.6
Rhsim12G0028500 Rhododendron simsii HOM05D003413 ORTHO05D004197 9.0e-24 113.6 81 72.8
THA.LOC104812691 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 9.0e-24 113.6 85 72.9
Aa31LG1G1740 Aethionema arabicum HOM05D003413 ORTHO05D004197 1.2e-23 113.2 83 72.3
EL10Ac6g13472 Beta vulgaris HOM05D003413 ORTHO05D004197 1.2e-23 113.2 81 71.6
MELO3C011449.2 Cucumis melo HOM05D003413 ORTHO05D004197 1.5e-23 112.8 81 70.4
Thhalv10004762m.g Eutrema salsugineum HOM05D003413 ORTHO05D004197 1.5e-23 112.8 83 71.1
Nn3g16510 Nelumbo nucifera HOM05D003413 ORTHO05D004197 2.0e-23 112.5 81 72.8
PSO063G0094 Papaver somniferum HOM05D003413 ORTHO05D004197 2.0e-23 112.5 82 72.0
PSO782G4279 Papaver somniferum HOM05D003413 ORTHO05D004197 2.0e-23 112.5 82 72.0
Cc11_g16770 Coffea canephora HOM05D003413 ORTHO05D004197 2.6e-23 112.1 83 68.7
MD16G1116800 Malus domestica HOM05D003413 ORTHO05D004197 2.6e-23 112.1 99 62.6
Potri.008G177000 Populus trichocarpa HOM05D003413 ORTHO05D004197 2.6e-23 112.1 82 69.5
AT3G26340 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 3.4e-23 111.7 83 69.9
CARHR013390 Cardamine hirsuta HOM05D003413 ORTHO05D004197 3.4e-23 111.7 83 71.1
Hund25449 Selenicereus undatus HOM05D003413 ORTHO05D004197 3.4e-23 111.7 82 70.7
THA.LOC104814351 Tarenaya hassleriana HOM05D003413 ORTHO05D004197 3.4e-23 111.7 85 71.8
Actinidia08079 Actinidia chinensis HOM05D003413 ORTHO05D004197 4.5e-23 111.3 81 70.4
Actinidia30663 Actinidia chinensis HOM05D003413 ORTHO05D004197 4.5e-23 111.3 81 70.4
AL5G15110 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 4.5e-23 111.3 83 69.9
vmacro20451 Vaccinium macrocarpon HOM05D003413 ORTHO05D004197 5.8e-23 110.9 82 69.5
CsaV3_5G030400 Cucumis sativus L. HOM05D003413 ORTHO05D004197 7.6e-23 110.5 82 72.0
Nitab4.5_0004212g0060 Nicotiana tabacum HOM05D003413 ORTHO05D004197 7.6e-23 110.5 81 69.1
SGA_v2.0_scaffold87G27141 Striga asiatica HOM05D003413 ORTHO05D004197 7.6e-23 110.5 83 72.3
COL.COLO4_20354 Corchorus olitorius HOM05D003413 ORTHO05D004197 1.0e-22 110.2 81 71.6
Sed0010714 Sechium edule HOM05D003413 ORTHO05D004197 1.0e-22 110.2 76 73.7
Eucgr.H04655 Eucalyptus grandis HOM05D003413 ORTHO05D004197 2.2e-22 109.0 81 69.1
Lsat_1_v5_gn_8_149501 Lactuca sativa HOM05D003413 ORTHO05D004197 2.2e-22 109.0 82 72.0
PGR119G0878 Punica granatum HOM05D003413 ORTHO05D004197 2.2e-22 109.0 81 67.9
Atru.chr11.2293 Acer truncatum HOM05D003413 ORTHO05D004197 2.9e-22 108.6 81 71.6
Carub.0005s0426 Capsella rubella HOM05D003413 ORTHO05D004197 2.9e-22 108.6 83 67.5
Dinv14816 Davidia involucrata HOM05D003413 ORTHO05D004197 2.9e-22 108.6 83 68.7
Sabra10G0047300 Salix brachista HOM05D003413 ORTHO05D004197 2.9e-22 108.6 84 69.0
Peaxi162Scf00858g00310 Petunia axillaris HOM05D003413 ORTHO05D004197 3.8e-22 108.2 81 67.9
Potri.010G058100 Populus trichocarpa HOM05D003413 ORTHO05D004197 5.0e-22 107.8 84 69.0
ATR1120G105 Amborella trichopoda HOM05D003413 ORTHO05D004197 8.4e-22 107.1 81 67.9
ECA233G4198 Erigeron canadensis HOM05D003413 ORTHO05D004197 8.4e-22 107.1 82 69.5
Nitab4.5_0012482g0010 Nicotiana tabacum HOM05D003413 ORTHO05D004197 8.4e-22 107.1 103 60.2
Hund21776 Selenicereus undatus HOM05D003413 ORTHO05D004197 8.4e-22 107.1 90 63.3
Dinv10975 Davidia involucrata HOM05D003413 ORTHO05D004197 1.1e-21 106.7 82 68.3
Oeu056675.1 Olea europaea HOM05D003413 ORTHO05D004197 1.1e-21 106.7 82 70.7
Rhsim12G0102400 Rhododendron simsii HOM05D003413 ORTHO05D004197 1.1e-21 106.7 85 68.2
SalBow1G2866 Salvia bowleyana HOM05D003413 ORTHO05D004197 1.1e-21 106.7 83 69.9
Solyc05g056160.3 Solanum lycopersicum HOM05D003413 ORTHO05D004197 1.1e-21 106.7 81 70.4
Sopen03g016120 Solanum pennellii HOM05D003413 ORTHO05D004197 1.1e-21 106.7 81 69.1
Sopen05g034570 Solanum pennellii HOM05D003413 ORTHO05D004197 1.1e-21 106.7 81 70.4
PGSC0003DMG400014972 Solanum tuberosum HOM05D003413 ORTHO05D004197 1.1e-21 106.7 81 70.4
MSTRG.2454 Avicennia marina HOM05D003413 ORTHO05D004197 1.4e-21 106.3 83 71.1
HanXRQChr08g0207581 Helianthus annuus HOM05D003413 ORTHO05D004197 1.4e-21 106.3 94 64.9
Nitab4.5_0000582g0200 Nicotiana tabacum HOM05D003413 ORTHO05D004197 1.4e-21 106.3 81 67.9
PGSC0003DMG400023337 Solanum tuberosum HOM05D003413 ORTHO05D004197 1.4e-21 106.3 81 70.4
CDE05G0059 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 3.2e-21 105.1 84 69.0
Lj3C1066T5 Lonicera japonica HOM05D003413 ORTHO05D004197 3.2e-21 105.1 82 68.3
SHI04151 Sapria himalayana HOM05D003413 ORTHO05D004197 3.2e-21 105.1 82 69.5
AL1G24710 Arabidopsis lyrata HOM05D003413 ORTHO05D004197 4.2e-21 104.8 83 67.5
TAR629G2699 Trochodendron aralioides HOM05D003413 ORTHO05D004197 4.2e-21 104.8 108 56.5
Carub.0001s1281 Capsella rubella HOM05D003413 ORTHO05D004197 5.5e-21 104.4 83 67.5
Migut.E00028 Erythranthe guttata HOM05D003413 ORTHO05D004197 5.5e-21 104.4 81 66.7
Aqoxy5G03439 Aquilegia oxysepala HOM05D003413 ORTHO05D004197 7.2e-21 104.0 86 66.3
CAN.G694.91 Capsicum annuum HOM05D003413 ORTHO05D004197 9.3e-21 103.6 81 67.9
RcHm_v2.0_Chr4g0430701 Rosa chinensis HOM05D003413 ORTHO05D004197 9.3e-21 103.6 81 67.9
AT1G13060 Arabidopsis thaliana HOM05D003413 ORTHO05D004197 1.2e-20 103.2 83 66.3
BolC5t29773H Brassica oleracea HOM05D003413 ORTHO05D004197 1.2e-20 103.2 63 79.4
CDE07G0715 Ceratophyllum demersum HOM05D003413 ORTHO05D004197 1.6e-20 102.8 84 67.9
Oeu020301.1 Olea europaea HOM05D003413 ORTHO05D004197 2.1e-20 102.4 81 65.4
ECA246G0095 Erigeron canadensis HOM05D003413 ORTHO05D004197 2.7e-20 102.1 82 67.1
Lj6A824T74 Lonicera japonica HOM05D003413 ORTHO05D004197 4.6e-20 101.3 86 59.3
Sc01g0009880 Simmondsia chinensis HOM05D003413 ORTHO05D004197 4.6e-20 101.3 81 66.7
Ah.03g136290 Amaranthus hybridus HOM05D003413 ORTHO05D004197 6.1e-20 100.9 85 65.9
Ciclev10032238m.g Citrus clementina HOM05D003413 ORTHO05D004197 6.1e-20 100.9 81 66.7
TWI36G0673 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 5.1e-19 97.8 84 65.5
Sabra08G0134800 Salix brachista HOM05D003413 ORTHO05D004197 3.3e-18 95.1 115 49.6
FAN22G2268 Fragaria x ananassa HOM05D003413 ORTHO05D004197 4.3e-18 94.7 59 78.0
FAN07G1700 Fragaria x ananassa HOM05D003413 ORTHO05D004197 7.4e-18 94.0 84 59.5
TWI18G0413 Tripterygium wilfordii HOM05D003413 ORTHO05D004197 7.4e-18 94.0 84 63.1
unitig_62.g23655 Utricularia gibba HOM05D003413 ORTHO05D004197 9.7e-18 93.6 79 60.8
Solyc03g063450.2 Solanum lycopersicum HOM05D003413 ORTHO05D004197 1.3e-17 93.2 77 63.6
HPP92_020236 Vanilla planifolia HOM05D003413 ORTHO05D004197 1.3e-17 93.2 65 72.3
FvH4_4g24020 Fragaria vesca HOM05D003413 ORTHO05D004197 1.6e-17 92.8 84 59.5
FAN12G0555 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.6e-17 92.8 84 59.5
FAN17G2448 Fragaria x ananassa HOM05D003413 ORTHO05D004197 1.6e-17 92.8 84 59.5
MD06G1053500 Malus domestica HOM05D003413 ORTHO05D029074 4.8e-17 91.3 73 64.4
Nitab4.5_0000071g0160 Nicotiana tabacum HOM05D003413 ORTHO05D004197 4.8e-17 91.3 81 63.0
Pp3c11_2970 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.1e-16 90.1 79 63.3
Mapoly0021s0078 Marchantia polymorpha HOM05D003413 ORTHO05D004197 1.5e-15 86.3 88 58.0
Peaxi162Scf01227g00031 Petunia axillaris HOM05D003413 ORTHO05D004197 2.6e-15 85.5 81 58.0
DCAR_026471 Daucus carota HOM05D003413 ORTHO05D004197 7.7e-15 84.0 44 93.2
Zm00001eb376670 Zea mays HOM05D003413 ORTHO05D004197 1.4e-13 79.7 85 58.8
Os06g0153800 Oryza sativa ssp. japonica HOM05D003413 ORTHO05D004197 1.9e-13 79.3 86 55.8
CBR_g34466 Chara braunii HOM05D003413 ORTHO05D004197 9.4e-13 77.0 64 62.5
Lsat_1_v5_gn_3_130100 Lactuca sativa HOM05D003413 ORTHO05D013393 1.2e-12 76.6 57 75.4
SMO147G0030 Selaginella moellendorffii HOM05D003413 ORTHO05D004197 1.6e-12 76.3 82 56.1
CBR_g23349 Chara braunii HOM05D003413 ORTHO05D004197 6.1e-12 74.3 58 62.1
BolC8t47970H Brassica oleracea HOM05D003413 ORTHO05D004197 6.7e-11 70.9 40 85.0
A03p26430 Brassica napus HOM05D003413 ORTHO05D004197 3.3e-10 68.6 34 97.1
Cre10.g461950 Chlamydomonas reinhardtii HOM05D003413 ORTHO05D004197 5.7e-10 67.8 55 58.2
Pp3c7_21050 Physcomitrium patens HOM05D003413 ORTHO05D004197 1.3e-09 66.6 42 76.2
COL.COLO4_15071 Corchorus olitorius HOM05D003413 ORTHO05D029074 1.1e-08 63.5 37 86.5
COL.COLO4_24638 Corchorus olitorius HOM05D003413 ORTHO05D029074 1.1e-08 63.5 37 86.5
MCO06G264 Micromonas commoda HOM05D003413 ORTHO05D004197 3.1e-08 62.0 62 48.4
BcaC07g37608 Brassica carinata HOM05D003413 ORTHO05D004197 9.1e-08 60.5 30 93.3
PRCOL_00003194 Prasinoderma coloniale HOM05D003413 ORTHO05D004197 3.4e-07 58.5 90 43.3


User provided reference genes

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