Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7474 Trifolium pratense HOM05D002551 ORTHO05D002832 3.7e-62 241.5 133 100.0
TPR.G21122 Trifolium pratense HOM05D002551 ORTHO05D002832 1.4e-40 169.9 99 86.9
TPR.G28217 Trifolium pratense HOM05D002551 ORTHO05D002832 3.7e-38 161.8 96 86.5
TPR.G39874 Trifolium pratense HOM05D002551 ORTHO05D002832 8.2e-38 160.6 77 98.7
Medtr7g079740 Medicago truncatula HOM05D002551 ORTHO05D002832 2.0e-36 156.0 96 82.3
TPR.G30346 Trifolium pratense HOM05D002551 ORTHO05D002832 7.7e-36 154.1 99 80.8
Medtr7g079820 Medicago truncatula HOM05D002551 ORTHO05D002832 1.0e-35 153.7 94 81.9
Medtr7g079730 Medicago truncatula HOM05D002551 ORTHO05D002832 1.3e-35 153.3 94 80.9
Medtr7g079770 Medicago truncatula HOM05D002551 ORTHO05D002832 8.5e-35 150.6 99 81.8
Medtr7g079780 Medicago truncatula HOM05D002551 ORTHO05D002832 8.5e-35 150.6 97 80.4
Psat0s4851g0160 Pisum sativum HOM05D002551 ORTHO05D002832 1.5e-31 139.8 96 72.9
Psat0s7016g0040 Pisum sativum HOM05D002551 ORTHO05D002832 1.5e-31 139.8 96 72.9
TPR.G13819 Trifolium pratense HOM05D002551 ORTHO05D002832 5.7e-31 137.9 79 83.5
Medtr1g103400 Medicago truncatula HOM05D002551 ORTHO05D002832 5.0e-27 124.8 77 72.7
Ca_10865_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 5.5e-26 121.3 73 75.3
Psat0s4055g0080 Pisum sativum HOM05D002551 ORTHO05D002832 1.0e-24 117.1 93 68.8
Ca_10867_v3 Cicer arietinum L. HOM05D002551 ORTHO05D002832 4.0e-24 115.2 76 67.1
Psat6g206160 Pisum sativum HOM05D002551 ORTHO05D002832 4.0e-24 115.2 77 71.4
Psat6g206200 Pisum sativum HOM05D002551 ORTHO05D002832 1.5e-23 113.2 77 70.1
Glyma.20G146200 Glycine max HOM05D002551 ORTHO05D002832 2.4e-21 105.9 97 57.7
Glyma.20G148200 Glycine max HOM05D002551 ORTHO05D002832 2.4e-21 105.9 97 57.7
Lj5g0023538 Lotus japonicus HOM05D002551 ORTHO05D002832 4.1e-21 105.1 69 68.1
Glyma.10G246500 Glycine max HOM05D002551 ORTHO05D002832 3.5e-20 102.1 75 61.3
Glyma.10G246300 Glycine max HOM05D002551 ORTHO05D002832 1.0e-19 100.5 72 61.1
Glyma.20G148300 Glycine max HOM05D002551 ORTHO05D002832 2.5e-18 95.9 69 62.3
Glyma.20G148400 Glycine max HOM05D002551 ORTHO05D002832 2.5e-18 95.9 69 62.3
Lj5g0023246 Lotus japonicus HOM05D002551 ORTHO05D002832 5.5e-18 94.7 70 61.4
VMungo0331G0684 Vigna mungo HOM05D002551 ORTHO05D002832 1.6e-17 93.2 105 47.6
Lalb_Chr06g0170401 Lupinus albus HOM05D002551 ORTHO05D002832 2.1e-17 92.8 69 56.5
Lalb_Chr06g0170421 Lupinus albus HOM05D002551 ORTHO05D002832 2.1e-17 92.8 69 56.5
Phvul.007G059800 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.8e-17 92.4 74 58.1
Lalb_Chr22g0356821 Lupinus albus HOM05D002551 ORTHO05D002832 4.7e-17 91.7 69 56.5
Phvul.007G059700 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.7e-17 91.7 99 49.5
Phvul.007G059725 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.7e-17 91.7 99 49.5
Phvul.007G059750 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.7e-17 91.7 99 49.5
Phvul.007G059775 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.7e-17 91.7 99 49.5
Phvul.007G060000 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 4.7e-17 91.7 99 49.5
VMungo0720G0948 Vigna mungo HOM05D002551 ORTHO05D002832 8.9e-16 87.4 69 59.4
VMungo0720G2384 Vigna mungo HOM05D002551 ORTHO05D002832 8.9e-16 87.4 74 54.1
arahy.Tifrunner.gnm1.ann1.6TFR0H Arachis hypogaea HOM05D002551 ORTHO05D002832 9.8e-15 84.0 76 51.3
Glyma.10G246401 Glycine max HOM05D002551 ORTHO05D002832 1.3e-14 83.6 88 42.0
arahy.Tifrunner.gnm1.ann1.E5WGR0 Arachis hypogaea HOM05D002551 ORTHO05D002832 1.7e-14 83.2 76 50.0
SHI00485 Sapria himalayana HOM05D002551 ORTHO05D002832 5.0e-11 71.6 69 42.0
TAR362G0951 Trochodendron aralioides HOM05D002551 ORTHO05D002832 6.6e-11 71.2 74 39.2
TAR633G2055 Trochodendron aralioides HOM05D002551 ORTHO05D002832 4.3e-10 68.6 77 36.4
QL06p001653 Quercus lobata HOM05D002551 ORTHO05D002832 7.3e-10 67.8 75 38.7
Ciclev10006494m.g Citrus clementina HOM05D002551 ORTHO05D002832 9.5e-10 67.4 74 39.2
Psat0s5g0160 Pisum sativum HOM05D002551 ORTHO05D002832 9.5e-10 67.4 65 53.8
Ah.02g111200 Amaranthus hybridus HOM05D002551 ORTHO05D002832 1.2e-09 67.0 72 38.9
Nn1g02381 Nelumbo nucifera HOM05D002551 ORTHO05D002832 1.6e-09 66.6 82 37.8
Psat5g199920 Pisum sativum HOM05D002551 ORTHO05D002832 1.6e-09 66.6 35 80.0
Nn1g02380 Nelumbo nucifera HOM05D002551 ORTHO05D002832 2.1e-09 66.2 69 39.1
Nitab4.5_0002307g0040 Nicotiana tabacum HOM05D002551 ORTHO05D002832 2.1e-09 66.2 91 35.2
ECA247G2018 Erigeron canadensis HOM05D002551 ORTHO05D002832 2.8e-09 65.9 76 35.5
Aqoxy2G03431 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 3.6e-09 65.5 76 34.2
CsaV3_3G013090 Cucumis sativus L. HOM05D002551 ORTHO05D002832 3.6e-09 65.5 86 32.6
Migut.G00363 Erythranthe guttata HOM05D002551 ORTHO05D002832 3.6e-09 65.5 69 37.7
Sc24g0003280 Simmondsia chinensis HOM05D002551 ORTHO05D002832 4.7e-09 65.1 85 31.8
EL10Ac5g10531 Beta vulgaris HOM05D002551 ORTHO05D002832 6.1e-09 64.7 68 35.3
Lalb_Chr06g0170441 Lupinus albus HOM05D002551 ORTHO05D002832 6.1e-09 64.7 55 49.1
MELO3C006516.2 Cucumis melo HOM05D002551 ORTHO05D002832 8.0e-09 64.3 86 32.6
Prupe.1G018000 Prunus persica HOM05D002551 ORTHO05D002832 8.0e-09 64.3 73 41.1
CDE07G1821 Ceratophyllum demersum HOM05D003259 ORTHO05D002832 1.0e-08 63.9 74 33.8
Nitab4.5_0004062g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 1.0e-08 63.9 89 34.8
ClCG05G005030 Citrullus lanatus HOM05D002551 ORTHO05D002832 1.4e-08 63.5 73 34.2
PSO832G4341 Papaver somniferum HOM05D002551 ORTHO05D002832 1.4e-08 63.5 73 37.0
TWI75G1269 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 1.4e-08 63.5 74 36.5
FvH4_2g23190 Fragaria vesca HOM05D002551 ORTHO05D002832 1.8e-08 63.2 76 32.9
Lsat_1_v5_gn_9_6181 Lactuca sativa HOM05D002551 ORTHO05D002832 2.3e-08 62.8 73 37.0
Phvul.007G173600 Phaseolus vulgaris HOM05D002551 ORTHO05D002832 2.3e-08 62.8 69 42.0
MD16G1197200 Malus domestica HOM05D002551 ORTHO05D002832 3.1e-08 62.4 74 41.9
Nitab4.5_0004062g0010 Nicotiana tabacum HOM05D002551 ORTHO05D002832 3.1e-08 62.4 76 36.8
Peaxi162Scf00230g00126 Petunia axillaris HOM05D002551 ORTHO05D002832 3.1e-08 62.4 74 35.1
PGR004G1796 Punica granatum HOM05D002551 ORTHO05D002832 3.1e-08 62.4 69 40.6
GSVIVG01001185001 Vitis vinifera HOM05D002551 ORTHO05D002832 3.1e-08 62.4 74 35.1
CANSAT78G1619 Cannabis sativa HOM05D002551 ORTHO05D002832 4.0e-08 62.0 69 37.7
CANSAT78G2456 Cannabis sativa HOM05D002551 ORTHO05D002832 4.0e-08 62.0 69 37.7
RcHm_v2.0_Chr6g0290441 Rosa chinensis HOM05D002551 ORTHO05D002832 5.2e-08 61.6 69 34.8
Sp3g20400 Schrenkiella parvula HOM05D002551 ORTHO05D002832 5.2e-08 61.6 70 37.1
Sed0010447 Sechium edule HOM05D002551 ORTHO05D002832 5.2e-08 61.6 69 36.2
Aqoxy2G03428 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 6.8e-08 61.2 73 34.2
Haze_04679 Corylus avellana HOM05D002551 ORTHO05D002832 6.8e-08 61.2 80 31.2
HanXRQChr05g0154401 Helianthus annuus HOM05D002551 ORTHO05D002832 6.8e-08 61.2 73 35.6
MD13G1196800 Malus domestica HOM05D002551 ORTHO05D002832 6.8e-08 61.2 69 40.6
Nitab4.5_0002307g0030 Nicotiana tabacum HOM05D002551 ORTHO05D002832 6.8e-08 61.2 76 35.5
Prupe.8G237500 Prunus persica HOM05D002551 ORTHO05D002832 6.8e-08 61.2 73 37.0
EL10Ac3g06479 Beta vulgaris HOM05D002551 ORTHO05D002832 8.9e-08 60.8 78 30.8
CAN.G1699.1 Capsicum annuum HOM05D002551 ORTHO05D002832 8.9e-08 60.8 78 32.1
Nitab4.5_0000252g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 8.9e-08 60.8 74 35.1
Nitab4.5_0001729g0060 Nicotiana tabacum HOM05D002551 ORTHO05D002832 8.9e-08 60.8 74 35.1
Actinidia21130 Actinidia chinensis HOM05D002551 ORTHO05D002832 1.2e-07 60.5 74 35.1
arahy.Tifrunner.gnm1.ann1.R5FKIY Arachis hypogaea HOM05D002551 ORTHO05D002832 1.2e-07 60.5 72 34.7
Peaxi162Scf00092g00216 Petunia axillaris HOM05D002551 ORTHO05D002832 1.2e-07 60.5 69 39.1
Solyc09g082360.4 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.2e-07 60.5 73 31.5
CAN.G1699.2 Capsicum annuum HOM05D002551 ORTHO05D002832 1.5e-07 60.1 73 31.5
MBI01_g44541_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 1.5e-07 60.1 77 35.1
TWI73G1150 Tripterygium wilfordii HOM05D002551 ORTHO05D002832 1.5e-07 60.1 74 32.4
arahy.Tifrunner.gnm1.ann1.WD5WT3 Arachis hypogaea HOM05D002551 ORTHO05D002832 2.0e-07 59.7 72 34.7
FAN15G1237 Fragaria x ananassa HOM05D002551 ORTHO05D002832 2.0e-07 59.7 76 31.6
TPR.G27145 Trifolium pratense HOM05D002551 ORTHO05D002832 2.0e-07 59.7 74 33.8
Cfa006172 Carpinus fangiana HOM05D002551 ORTHO05D002832 2.6e-07 59.3 72 33.3
AUR62034727 Chenopodium quinoa HOM05D002551 ORTHO05D002832 3.4e-07 58.9 72 34.7
MBI01_g44542_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 4.4e-07 58.5 74 35.1
AUR62033661 Chenopodium quinoa HOM05D002551 ORTHO05D002832 5.8e-07 58.2 80 31.2
MD03G1261200 Malus domestica HOM05D002551 ORTHO05D002832 5.8e-07 58.2 69 34.8
Sopen09g031230 Solanum pennellii HOM05D002551 ORTHO05D002832 5.8e-07 58.2 75 30.7
SGA_v2.0_scaffold81G26035 Striga asiatica HOM05D002551 ORTHO05D002832 5.8e-07 58.2 76 30.3
Actinidia24912 Actinidia chinensis HOM05D002551 ORTHO05D002832 7.5e-07 57.8 73 35.6
Dinv32904 Davidia involucrata HOM05D002551 ORTHO05D002832 9.8e-07 57.4 69 36.2
Cfa008469 Carpinus fangiana HOM05D002551 ORTHO05D002832 1.3e-06 57.0 61 41.0
FAN20G1127 Fragaria x ananassa HOM05D002551 ORTHO05D002832 1.3e-06 57.0 76 30.3
FAN22G0282 Fragaria x ananassa HOM05D002551 ORTHO05D002832 1.3e-06 57.0 78 34.6
MBI01_g42408_MAGBIO Magnolia biondii HOM05D002551 ORTHO05D002832 1.3e-06 57.0 77 31.2
PSO210G4289 Papaver somniferum HOM05D002551 ORTHO05D002832 1.3e-06 57.0 60 38.3
Potri.005G212266 Populus trichocarpa HOM05D002551 ORTHO05D002832 1.3e-06 57.0 73 34.2
Solyc09g082340.2 Solanum lycopersicum HOM05D002551 ORTHO05D002832 1.3e-06 57.0 73 31.5
CiPaw.01G198100 Carya illinoinensis HOM05D002551 ORTHO05D002832 1.7e-06 56.6 74 29.7
Migut.N02035 Erythranthe guttata HOM05D002551 ORTHO05D002832 1.7e-06 56.6 69 33.3
Migut.O00476 Erythranthe guttata HOM05D002551 ORTHO05D002832 1.7e-06 56.6 69 33.3
Lj5g0011762 Lotus japonicus HOM05D002551 ORTHO05D002832 1.7e-06 56.6 69 36.2
Sopen09g031220 Solanum pennellii HOM05D002551 ORTHO05D002832 1.7e-06 56.6 73 31.5
PGSC0003DMG400019354 Solanum tuberosum HOM05D002551 ORTHO05D002832 1.7e-06 56.6 69 36.2
ClCG09G007260 Citrullus lanatus HOM05D002551 ORTHO05D002832 2.2e-06 56.2 69 36.2
FAN17G0400 Fragaria x ananassa HOM05D002551 ORTHO05D002832 2.2e-06 56.2 78 34.6
Thecc.04G235500 Theobroma cacao HOM05D002551 ORTHO05D002832 2.2e-06 56.2 70 38.6
Aqoxy5G03465 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.9e-06 55.8 74 32.4
Aqoxy5G03501 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 2.9e-06 55.8 74 32.4
BcaC09g49187 Brassica carinata HOM05D002551 ORTHO05D002832 2.9e-06 55.8 75 30.7
C01p41670 Brassica napus HOM05D002551 ORTHO05D002832 2.9e-06 55.8 75 30.7
FvH4_4g15931 Fragaria vesca HOM05D002551 ORTHO05D002832 2.9e-06 55.8 78 33.3
Gorai.006G241100 Gossypium raimondii HOM05D002551 ORTHO05D002832 2.9e-06 55.8 72 37.5
vmacro14908 Vaccinium macrocarpon HOM05D002551 ORTHO05D002832 2.9e-06 55.8 73 31.5
Aa31LG8G9150 Aethionema arabicum HOM05D002551 ORTHO05D002832 3.7e-06 55.5 74 35.1
Gohir.A09G217700 Gossypium hirsutum HOM05D002551 ORTHO05D002832 3.7e-06 55.5 69 39.1
Gohir.D09G220100 Gossypium hirsutum HOM05D002551 ORTHO05D002832 3.7e-06 55.5 69 39.1
Aqoxy5G00432 Aquilegia oxysepala HOM05D002551 ORTHO05D002832 4.9e-06 55.1 69 33.3
CSS0025481 Camellia sinensis var. sinensis HOM05D002551 ORTHO05D002832 4.9e-06 55.1 68 35.3
Rhsim01G0273000 Rhododendron simsii HOM05D002551 ORTHO05D002832 4.9e-06 55.1 72 30.6
PGSC0003DMG400032247 Solanum tuberosum HOM05D002551 ORTHO05D002832 4.9e-06 55.1 73 28.8
RcHm_v2.0_Chr4g0415511 Rosa chinensis HOM05D002551 ORTHO05D002832 6.4e-06 54.7 78 34.6
CAN.G1476.2 Capsicum annuum HOM05D002551 ORTHO05D002832 8.3e-06 54.3 73 30.1
GSVIVG01001186001 Vitis vinifera HOM05D003028 ORTHO05D003465 8.3e-06 54.3 69 34.8


User provided reference genes

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