Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7473 Trifolium pratense HOM05D007168 ORTHO05D009495 4.8e-117 424.5 207 100.0
Ca_01008_v3 Cicer arietinum L. HOM05D000470 ORTHO05D000348 6.7e-71 271.2 152 87.5
Psat5g306800 Pisum sativum HOM05D007168 ORTHO05D009495 3.8e-58 228.8 132 84.1
Medtr8g098955 Medicago truncatula HOM05D007168 ORTHO05D009495 1.6e-56 223.4 128 84.4
Glyma.13G370800 Glycine max HOM05D007168 ORTHO05D009495 8.3e-53 211.1 126 78.6
Phvul.005G183000 Phaseolus vulgaris HOM05D007168 ORTHO05D009495 1.4e-52 210.3 126 81.0
Lj3g0012904 Lotus japonicus HOM05D007168 ORTHO05D009495 2.7e-51 206.1 122 80.3
Glyma.15G002800 Glycine max HOM05D007168 ORTHO05D009495 7.2e-49 198.0 126 75.4
VMungo1080G0083 Vigna mungo HOM05D007168 ORTHO05D009495 2.0e-46 189.9 125 74.4
Lalb_Chr22g0349411 Lupinus albus HOM05D007168 ORTHO05D009495 2.2e-45 186.4 124 73.4
arahy.Tifrunner.gnm1.ann1.6LU9QM Arachis hypogaea HOM05D007168 ORTHO05D009495 2.0e-43 179.9 124 69.4
arahy.Tifrunner.gnm1.ann1.W35K7D Arachis hypogaea HOM05D007168 ORTHO05D009495 3.8e-42 175.6 122 68.9
DCAR_025559 Daucus carota HOM05D007168 ORTHO05D009495 6.4e-37 158.3 191 44.0
Sabra01G0030000 Salix brachista HOM05D007168 ORTHO05D009495 8.0e-32 141.4 194 39.7
BcaB05g25219 Brassica carinata HOM05D007168 ORTHO05D009495 2.9e-29 132.9 194 37.1
Actinidia25477 Actinidia chinensis HOM05D007168 ORTHO05D009495 1.4e-28 130.6 111 54.1
QL05p035661 Quercus lobata HOM05D007168 ORTHO05D009495 3.2e-28 129.4 118 54.2
GSVIVG01015982001 Vitis vinifera HOM05D007168 ORTHO05D009495 4.1e-28 129.0 128 48.4
CiPaw.01G255400 Carya illinoinensis HOM05D007168 ORTHO05D009495 2.1e-27 126.7 204 36.3
Cfa001873 Carpinus fangiana HOM05D007168 ORTHO05D009495 6.0e-27 125.2 115 54.8
Cpa.g.sc10.62 Carica papaya HOM05D007168 ORTHO05D009495 7.8e-27 124.8 115 51.3
Haze_16675 Corylus avellana HOM05D007168 ORTHO05D009495 1.7e-26 123.6 124 51.6
MBI15_g18239_MAGBIO Magnolia biondii HOM05D007168 ORTHO05D009495 2.3e-26 123.2 203 34.0
Atru.chr1.2792 Acer truncatum HOM05D007168 ORTHO05D009495 5.1e-26 122.1 126 46.8
CSS0027003 Camellia sinensis var. sinensis HOM05D007168 ORTHO05D009495 5.1e-26 122.1 115 52.2
Potri.001G043500 Populus trichocarpa HOM05D007168 ORTHO05D009495 8.6e-26 121.3 115 51.3
vmacro19062 Vaccinium macrocarpon HOM05D007168 ORTHO05D009495 1.5e-25 120.6 107 55.1
THA.LOC104812413 Tarenaya hassleriana HOM05D007168 ORTHO05D009495 3.3e-25 119.4 126 49.2
Rhsim08G0204200 Rhododendron simsii HOM05D007168 ORTHO05D009495 4.3e-25 119.0 119 51.3
TAR383G0144 Trochodendron aralioides HOM05D007168 ORTHO05D009495 4.3e-25 119.0 106 51.9
CDE04G2618 Ceratophyllum demersum HOM05D007168 ORTHO05D009495 9.5e-25 117.9 190 36.8
MSTRG.11185 Avicennia marina HOM05D007168 ORTHO05D009495 2.1e-24 116.7 186 33.9
Gohir.D06G118800 Gossypium hirsutum HOM05D007168 ORTHO05D009495 4.7e-24 115.5 120 49.2
Lj9C678G6 Lonicera japonica HOM05D007168 ORTHO05D009495 6.2e-24 115.2 110 50.9
Oeu060108.1 Olea europaea HOM05D007168 ORTHO05D009495 1.1e-23 114.4 110 48.2
Thecc.06G043100 Theobroma cacao HOM05D007168 ORTHO05D009495 1.4e-23 114.0 115 48.7
Ciclev10025296m.g Citrus clementina HOM05D007168 ORTHO05D009495 3.1e-23 112.8 115 47.0
Cc04_g05180 Coffea canephora HOM05D007168 ORTHO05D009495 3.1e-23 112.8 119 46.2
Gorai.010G136600 Gossypium raimondii HOM05D007168 ORTHO05D009495 3.1e-23 112.8 119 47.1
PGR031G0296 Punica granatum HOM05D007168 ORTHO05D009495 4.0e-23 112.5 106 53.8
Carub.0002s2664 Capsella rubella HOM05D007168 ORTHO05D009495 6.8e-23 111.7 125 45.6
Duzib235G0567 Durio zibethinus HOM05D007168 ORTHO05D009495 8.9e-23 111.3 115 46.1
Gohir.A06G114400 Gossypium hirsutum HOM05D007168 ORTHO05D009495 8.9e-23 111.3 119 46.2
Prupe.3G099700 Prunus persica HOM05D007168 ORTHO05D009495 1.2e-22 110.9 117 49.6
Peaxi162Scf00553g00536 Petunia axillaris HOM05D007168 ORTHO05D009495 2.0e-22 110.2 95 53.7
Dinv21416 Davidia involucrata HOM05D007168 ORTHO05D009495 2.6e-22 109.8 112 48.2
COL.COLO4_26742 Corchorus olitorius HOM05D007168 ORTHO05D009495 3.4e-22 109.4 115 48.7
Hund02412 Selenicereus undatus HOM05D007168 ORTHO05D009495 5.8e-22 108.6 104 46.2
AUR62029846 Chenopodium quinoa HOM05D007168 ORTHO05D009495 9.9e-22 107.8 110 43.6
Manes.11G067300 Manihot esculenta HOM05D007168 ORTHO05D009495 1.3e-21 107.5 116 44.8
CARHR073590 Cardamine hirsuta HOM05D007168 ORTHO05D009495 3.7e-21 105.9 115 46.1
Thhalv10018367m.g Eutrema salsugineum HOM05D007168 ORTHO05D009495 3.7e-21 105.9 131 42.7
AL2G40500 Arabidopsis lyrata HOM05D007168 ORTHO05D009495 4.9e-21 105.5 121 44.6
AUR62025876 Chenopodium quinoa HOM05D007168 ORTHO05D009495 4.9e-21 105.5 106 44.3
PGSC0003DMG400014209 Solanum tuberosum HOM05D007168 ORTHO05D009495 6.4e-21 105.1 105 48.6
Sopen03g036480 Solanum pennellii HOM05D007168 ORTHO05D009495 8.3e-21 104.8 105 47.6
Aqoxy1G03019 Aquilegia oxysepala HOM05D007168 ORTHO05D009495 1.1e-20 104.4 117 42.7
HanXRQChr16g0499391 Helianthus annuus HOM05D007168 ORTHO05D009495 1.1e-20 104.4 121 47.1
Sed0006951 Sechium edule HOM05D007168 ORTHO05D009495 7.1e-20 101.7 120 42.5
Solyc03g117570.3 Solanum lycopersicum HOM05D007168 ORTHO05D009495 7.1e-20 101.7 104 47.1
CAN.G407.4 Capsicum annuum HOM05D007168 ORTHO05D009495 1.6e-19 100.5 105 46.7
SGA_v2.0_scaffold5G02789 Striga asiatica HOM05D007168 ORTHO05D009495 1.6e-19 100.5 123 45.5
CANSAT56G0521 Cannabis sativa HOM05D007168 ORTHO05D009495 2.1e-19 100.1 105 48.6
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 2.7e-19 99.8 195 31.3
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 2.7e-19 99.8 195 31.3
Lsat_1_v5_gn_4_86841 Lactuca sativa HOM05D007168 ORTHO05D009495 4.6e-19 99.0 122 44.3
CsaV3_7G031860 Cucumis sativus L. HOM05D007168 ORTHO05D009495 6.0e-19 98.6 117 41.0
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 1.3e-18 97.4 183 30.6
BraA02t07306Z Brassica rapa HOM05D007168 ORTHO05D009495 2.3e-18 96.7 124 40.3
Sp5g34860 Schrenkiella parvula HOM05D007168 ORTHO05D009495 2.3e-18 96.7 116 44.0
Os08g0272200 Oryza sativa ssp. japonica HOM05D007168 ORTHO05D009495 3.0e-18 96.3 113 42.5
AT1G80880 Arabidopsis thaliana HOM05D007168 ORTHO05D009495 3.9e-18 95.9 126 38.9
HPP92_010744 Vanilla planifolia HOM05D007168 ORTHO05D009495 5.1e-18 95.5 189 29.1
PSO384G0786 Papaver somniferum HOM05D007168 ORTHO05D009495 6.6e-18 95.1 184 30.4
A02p23080 Brassica napus HOM05D007168 ORTHO05D009495 1.5e-17 94.0 124 39.5
Aa31LG4G1190 Aethionema arabicum HOM05D007168 ORTHO05D009495 1.9e-17 93.6 120 42.5
MSTRG.18528 Avicennia marina HOM05D007173 ORTHO05D009151 5.6e-17 92.0 165 32.7
BcaC03g15921 Brassica carinata HOM05D007168 ORTHO05D009495 5.6e-17 92.0 125 39.2
C02p36840 Brassica napus HOM05D007168 ORTHO05D009495 1.2e-16 90.9 124 37.9
ECA232G3944 Erigeron canadensis HOM05D000470 ORTHO05D000348 2.8e-16 89.7 107 46.7
SalBow7G1021 Salvia bowleyana HOM05D007168 ORTHO05D009495 3.6e-16 89.4 106 39.6
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 6.2e-16 88.6 165 32.7
BolC2t09695H Brassica oleracea HOM05D007168 ORTHO05D009495 1.1e-15 87.8 125 38.4
CAN.G479.71 Capsicum annuum HOM05D007173 ORTHO05D009151 1.4e-15 87.4 174 31.6
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 4.0e-15 85.9 171 29.2
VMungo1215G1169 Vigna mungo HOM05D007173 ORTHO05D009151 8.9e-15 84.7 174 28.7
Phvul.009G215700 Phaseolus vulgaris HOM05D007173 ORTHO05D009151 1.2e-14 84.3 174 28.7
CDE04G0318 Ceratophyllum demersum HOM05D007168 ORTHO05D009495 2.0e-14 83.6 121 34.7
Sopen10g021030 Solanum pennellii HOM05D007173 ORTHO05D009151 4.4e-14 82.4 164 31.7
BraA02t05256Z Brassica rapa HOM05D000424 ORTHO05D000355 5.8e-14 82.0 163 29.4
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 7.6e-14 81.6 129 32.6
Zm00001eb176370 Zea mays HOM05D007168 ORTHO05D009495 7.6e-14 81.6 124 34.7
PGSC0003DMG401009781 Solanum tuberosum HOM05D007173 ORTHO05D009151 9.9e-14 81.3 164 31.1
Nitab4.5_0009867g0020 Nicotiana tabacum HOM05D007168 ORTHO05D009495 1.3e-13 80.9 81 51.9
ATR0580G197 Amborella trichopoda HOM05D007168 ORTHO05D009495 1.7e-13 80.5 116 37.1
Solyc10g049570.3 Solanum lycopersicum HOM05D007173 ORTHO05D009151 3.8e-13 79.3 164 31.1
MBI13_g05942_MAGBIO Magnolia biondii HOM05D007335 ORTHO05D009113 8.4e-13 78.2 115 34.8
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 3.2e-12 76.3 164 30.5
Glyma.14G044600 Glycine max HOM05D007173 ORTHO05D009151 3.2e-12 76.3 174 28.2
Glyma.02G271600 Glycine max HOM05D007173 ORTHO05D009151 4.2e-12 75.9 164 29.9
AT5G15010 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.7e-11 73.2 213 23.5
Lsat_1_v5_gn_3_126181 Lactuca sativa HOM05D007173 ORTHO05D009151 3.5e-11 72.8 182 27.5
Glyma.07G188700 Glycine max HOM05D007101 ORTHO05D008632 4.6e-11 72.4 148 32.4
Lalb_Chr22g0350751 Lupinus albus HOM05D007335 ORTHO05D009113 2.3e-10 70.1 167 28.1
MSTRG.5528 Avicennia marina HOM05D007559 ORTHO05D009642 5.1e-10 68.9 165 27.9
Aa31LG11G14510 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.5e-09 67.4 183 24.0
MBI13_g43948_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D019275 3.3e-09 66.2 92 35.9
Cc02_g29420 Coffea canephora HOM05D007173 ORTHO05D009151 7.3e-09 65.1 165 25.5
EL10Ac5g11420 Beta vulgaris HOM05D007168 ORTHO05D009495 2.1e-08 63.5 40 60.0
Nitab4.5_0002209g0140 Nicotiana tabacum HOM05D007173 ORTHO05D009151 2.8e-08 63.2 163 27.0
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 2.8e-08 63.2 172 22.1
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 6.2e-08 62.0 187 27.8
CDE04G0575 Ceratophyllum demersum HOM05D000891 ORTHO05D000761 8.1e-08 61.6 175 23.4
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 1.8e-07 60.5 90 37.8
Dinv05942 Davidia involucrata HOM05D007173 ORTHO05D009151 2.4e-07 60.1 126 31.0
Os07g0603900 Oryza sativa ssp. japonica HOM05D005362 ORTHO05D006895 2.4e-07 60.1 204 23.5
A02p02830 Brassica napus HOM05D000424 ORTHO05D000355 4.0e-07 59.3 111 30.6
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 4.0e-07 59.3 171 22.8
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 4.0e-07 59.3 148 27.7
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 4.0e-07 59.3 148 27.7
Carub.0006s1317 Capsella rubella HOM05D000424 ORTHO05D000355 5.3e-07 58.9 161 23.0
Hund13263 Selenicereus undatus HOM05D007128 ORTHO05D000105 5.3e-07 58.9 191 23.6
SMO134G0289 Selaginella moellendorffii HOM05D008684 ORTHO05D010796 6.9e-07 58.5 107 31.8
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 9.0e-07 58.2 167 26.9
Manes.05G012004 Manihot esculenta HOM05D003039 ORTHO05D009478 1.2e-06 57.8 170 25.3
Manes.15G186000 Manihot esculenta HOM05D007173 ORTHO05D009151 1.2e-06 57.8 175 24.0
FAN28G1277 Fragaria x ananassa HOM05D007168 ORTHO05D000355 1.5e-06 57.4 92 33.7
Aqoxy5G03976 Aquilegia oxysepala HOM05D000104 ORTHO05D009920 2.0e-06 57.0 176 24.4
Thhalv10015264m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.0e-06 57.0 129 27.1
FAN18G1604 Fragaria x ananassa HOM05D002453 ORTHO05D008746 2.0e-06 57.0 167 25.1
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.6e-06 56.6 187 26.2
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 2.6e-06 56.6 187 26.2
MELO3C005140.2 Cucumis melo HOM05D005973 ORTHO05D007285 5.8e-06 55.5 204 21.6
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 7.6e-06 55.1 186 26.9
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 7.6e-06 55.1 167 24.6
Lsat_1_v5_gn_5_152320 Lactuca sativa HOM05D007752 ORTHO05D009994 7.6e-06 55.1 98 34.7
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 7.6e-06 55.1 183 24.6
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 7.6e-06 55.1 187 25.1
TWI34G1157 Tripterygium wilfordii HOM05D008234 ORTHO05D010422 7.6e-06 55.1 189 25.9
arahy.Tifrunner.gnm1.ann1.RGU3X9 Arachis hypogaea HOM05D007101 ORTHO05D008632 9.9e-06 54.7 66 39.4
Pp3c3_24770 Physcomitrium patens HOM05D000001 ORTHO05D000003 9.9e-06 54.7 168 23.8


User provided reference genes

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