Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7463 Trifolium pratense HOM05D004597 ORTHO05D005629 2.3e-34 148.3 73 100.0
RcHm_v2.0_Chr2g0095781 Rosa chinensis HOM05D004597 ORTHO05D005629 3.2e-28 127.9 103 68.0
ClCG08G002020 Citrullus lanatus HOM05D004597 ORTHO05D005629 4.2e-28 127.5 103 67.0
HanXRQChr12g0354281 Helianthus annuus HOM05D004597 ORTHO05D005629 5.5e-28 127.1 103 66.0
CiPaw.03G201900 Carya illinoinensis HOM05D004597 ORTHO05D005629 7.2e-28 126.7 103 67.0
Lj4g0020079 Lotus japonicus HOM05D004597 ORTHO05D005629 7.2e-28 126.7 103 67.0
Sed0000155 Sechium edule HOM05D004597 ORTHO05D005629 7.2e-28 126.7 103 67.0
Cpa.g.sc82.76 Carica papaya HOM05D004597 ORTHO05D005629 9.4e-28 126.3 103 66.0
FvH4_1g09250 Fragaria vesca HOM05D004597 ORTHO05D005629 9.4e-28 126.3 103 66.0
FAN19G2435 Fragaria x ananassa HOM05D004597 ORTHO05D005629 9.4e-28 126.3 103 66.0
FAN23G2914 Fragaria x ananassa HOM05D004597 ORTHO05D005629 9.4e-28 126.3 103 66.0
FAN28G1763 Fragaria x ananassa HOM05D004597 ORTHO05D005629 9.4e-28 126.3 103 66.0
FAN26G0325 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.2e-27 125.9 103 65.0
FAN26G3440 Fragaria x ananassa HOM05D004597 ORTHO05D005629 1.2e-27 125.9 103 65.0
ECA234G4331 Erigeron canadensis HOM05D004597 ORTHO05D005629 1.6e-27 125.6 103 66.0
Lsat_1_v5_gn_5_139160 Lactuca sativa HOM05D004597 ORTHO05D005629 1.6e-27 125.6 103 66.0
Medtr4g124790 Medicago truncatula HOM05D004597 ORTHO05D005629 1.6e-27 125.6 103 66.0
Glyma.17G046500 Glycine max HOM05D004597 ORTHO05D005629 2.1e-27 125.2 103 66.0
Manes.16G091900 Manihot esculenta HOM05D004597 ORTHO05D005629 2.1e-27 125.2 103 65.0
Thecc.09G071400 Theobroma cacao HOM05D004597 ORTHO05D005629 2.1e-27 125.2 103 65.0
Ca_21333_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.7e-27 124.8 103 65.0
Ca_30964_v3 Cicer arietinum L. HOM05D004597 ORTHO05D005629 2.7e-27 124.8 103 65.0
Lalb_Chr13g0299261 Lupinus albus HOM05D004597 ORTHO05D005629 2.7e-27 124.8 101 66.3
Peaxi162Scf00191g00102 Petunia axillaris HOM05D004597 ORTHO05D005629 2.7e-27 124.8 103 66.0
Rhsim08G0029600 Rhododendron simsii HOM05D004597 ORTHO05D005629 2.7e-27 124.8 103 64.1
COL.COLO4_21219 Corchorus olitorius HOM05D004597 ORTHO05D005629 3.6e-27 124.4 103 65.0
MD15G1222600 Malus domestica HOM05D004597 ORTHO05D005629 3.6e-27 124.4 103 65.0
Cfa002950 Carpinus fangiana HOM05D004597 ORTHO05D005629 4.7e-27 124.0 103 64.1
Haze_26057 Corylus avellana HOM05D004597 ORTHO05D005629 4.7e-27 124.0 103 64.1
DCAR_024773 Daucus carota HOM05D004597 ORTHO05D005629 4.7e-27 124.0 103 64.1
Sabra06G0107600 Salix brachista HOM05D004597 ORTHO05D005629 4.7e-27 124.0 103 64.1
MSTRG.26494 Avicennia marina HOM05D004597 ORTHO05D005629 6.1e-27 123.6 103 64.1
MELO3C025034.2 Cucumis melo HOM05D004597 ORTHO05D005629 6.1e-27 123.6 103 65.0
CsaV3_6G002530 Cucumis sativus L. HOM05D004597 ORTHO05D005629 6.1e-27 123.6 103 65.0
Nitab4.5_0001699g0010 Nicotiana tabacum HOM05D004597 ORTHO05D005629 6.1e-27 123.6 103 65.0
Nitab4.5_0007540g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 6.1e-27 123.6 103 65.0
GSVIVG01015027001 Vitis vinifera HOM05D004597 ORTHO05D005629 6.1e-27 123.6 103 65.0
arahy.Tifrunner.gnm1.ann1.4N6INR Arachis hypogaea HOM05D004597 ORTHO05D005629 8.0e-27 123.2 100 66.0
arahy.Tifrunner.gnm1.ann1.4YLW35 Arachis hypogaea HOM05D004597 ORTHO05D005629 8.0e-27 123.2 100 66.0
Potri.006G137500 Populus trichocarpa HOM05D004597 ORTHO05D005629 8.0e-27 123.2 103 64.1
TWI32G1285 Tripterygium wilfordii HOM05D004597 ORTHO05D005629 8.0e-27 123.2 103 64.1
Atru.chr7.1756 Acer truncatum HOM05D004597 ORTHO05D005629 1.0e-26 122.9 103 63.1
Phvul.003G128266 Phaseolus vulgaris HOM05D004597 ORTHO05D005629 1.0e-26 122.9 103 64.1
HPP92_019114 Vanilla planifolia HOM05D004597 ORTHO05D005629 1.0e-26 122.9 103 64.1
VMungo1215G0896 Vigna mungo HOM05D004597 ORTHO05D005629 1.0e-26 122.9 103 64.1
ATR0681G150 Amborella trichopoda HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 64.1
CSS0005573 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 64.1
Nn6g35647 Nelumbo nucifera HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 64.1
Psat4g018640 Pisum sativum HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 64.1
QL11p002680 Quercus lobata HOM05D004597 ORTHO05D005629 1.4e-26 122.5 102 63.7
Solyc07g042440.3 Solanum lycopersicum HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 65.0
Sopen07g022070 Solanum pennellii HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 65.0
PGSC0003DMG400013551 Solanum tuberosum HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 65.0
vmacro17087 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 63.1
vmacro17088 Vaccinium macrocarpon HOM05D004597 ORTHO05D005629 1.4e-26 122.5 103 63.1
Lj4A919T43 Lonicera japonica HOM05D004597 ORTHO05D005629 1.8e-26 122.1 103 63.1
Sed0006126 Sechium edule HOM05D004597 ORTHO05D005629 1.8e-26 122.1 103 64.1
Prupe.7G193200 Prunus persica HOM05D004597 ORTHO05D005629 2.3e-26 121.7 103 63.1
Ciclev10009453m.g Citrus clementina HOM05D004597 ORTHO05D005629 3.0e-26 121.3 101 62.4
Glyma.13G113200 Glycine max HOM05D004597 ORTHO05D005629 3.0e-26 121.3 103 64.1
SGA_v2.0_scaffold281G46915 Striga asiatica HOM05D004597 ORTHO05D005629 3.0e-26 121.3 103 62.1
Aqoxy7G00987 Aquilegia oxysepala HOM05D004597 ORTHO05D005629 4.0e-26 120.9 103 63.1
arahy.Tifrunner.gnm1.ann1.SJ1504 Arachis hypogaea HOM05D004597 ORTHO05D005629 4.0e-26 120.9 103 63.1
PGR119G0607 Punica granatum HOM05D004597 ORTHO05D005629 4.0e-26 120.9 103 63.1
EL10Ac8g18994 Beta vulgaris HOM05D004597 ORTHO05D005629 5.2e-26 120.6 103 62.1
AUR62025300 Chenopodium quinoa HOM05D004597 ORTHO05D005629 5.2e-26 120.6 103 62.1
AUR62028306 Chenopodium quinoa HOM05D004597 ORTHO05D005629 5.2e-26 120.6 103 62.1
Cc06_g12610 Coffea canephora HOM05D004597 ORTHO05D005629 5.2e-26 120.6 101 62.4
Rhsim08G0029700 Rhododendron simsii HOM05D004597 ORTHO05D005629 5.2e-26 120.6 103 62.1
Sabra18G0056100 Salix brachista HOM05D004597 ORTHO05D005629 5.2e-26 120.6 103 63.1
CAN.G210.7 Capsicum annuum HOM05D004597 ORTHO05D005629 6.8e-26 120.2 103 64.1
CDE05G1003 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 6.8e-26 120.2 103 62.1
CDE11G0438 Ceratophyllum demersum HOM05D004597 ORTHO05D005629 6.8e-26 120.2 103 62.1
Lalb_Chr13g0299251 Lupinus albus HOM05D004597 ORTHO05D005629 6.8e-26 120.2 103 64.1
SalBow6G0240 Salvia bowleyana HOM05D004597 ORTHO05D005629 6.8e-26 120.2 103 62.1
Oeu055329.1 Olea europaea HOM05D004597 ORTHO05D005629 8.8e-26 119.8 101 63.4
AL5G14740 Arabidopsis lyrata HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 60.4
AT3G26060 Arabidopsis thaliana HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 60.4
BcaB02g10783 Brassica carinata HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 60.4
Carub.0005s0392 Capsella rubella HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 60.4
Dinv25516 Davidia involucrata HOM05D004597 ORTHO05D005629 1.2e-25 119.4 103 62.1
Eucgr.C00774 Eucalyptus grandis HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 63.4
Sp5g18690 Schrenkiella parvula HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 60.4
Hund08871 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.2e-25 119.4 103 62.1
Sc18g0002790 Simmondsia chinensis HOM05D004597 ORTHO05D005629 1.2e-25 119.4 103 62.1
THA.LOC104815073 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 1.2e-25 119.4 101 60.4
Zm00001eb278510 Zea mays HOM05D004597 ORTHO05D005629 1.2e-25 119.4 103 61.2
arahy.Tifrunner.gnm1.ann1.2G0Z8B Arachis hypogaea HOM05D004597 ORTHO05D005629 1.5e-25 119.0 103 62.1
CSS0048779 Camellia sinensis var. sinensis HOM05D004597 ORTHO05D005629 1.5e-25 119.0 103 63.1
Potri.018G063300 Populus trichocarpa HOM05D004597 ORTHO05D005629 1.5e-25 119.0 103 63.1
MSTRG.19433 Avicennia marina HOM05D004597 ORTHO05D005629 2.0e-25 118.6 101 62.4
CARHR147050 Cardamine hirsuta HOM05D004597 ORTHO05D005629 2.0e-25 118.6 101 60.4
Aa31LG4G13040 Aethionema arabicum HOM05D004597 ORTHO05D005629 2.6e-25 118.2 101 59.4
BcaC01g02171 Brassica carinata HOM05D004597 ORTHO05D005629 2.6e-25 118.2 101 59.4
A06p23440 Brassica napus HOM05D004597 ORTHO05D005629 2.6e-25 118.2 101 59.4
C03p67930 Brassica napus HOM05D004597 ORTHO05D005629 2.6e-25 118.2 101 59.4
BolC3t19018H Brassica oleracea HOM05D004597 ORTHO05D005629 2.6e-25 118.2 101 59.4
BraA06t25436Z Brassica rapa HOM05D004597 ORTHO05D005629 2.6e-25 118.2 101 59.4
PSO421G0191 Papaver somniferum HOM05D004597 ORTHO05D005629 3.4e-25 117.9 103 62.1
PSO421G0482 Papaver somniferum HOM05D004597 ORTHO05D005629 3.4e-25 117.9 103 61.2
Peaxi162Scf00418g00113 Petunia axillaris HOM05D004597 ORTHO05D005629 3.4e-25 117.9 103 61.2
MD02G1099800 Malus domestica HOM05D004597 ORTHO05D005629 4.4e-25 117.5 103 62.1
PSO104G0043 Papaver somniferum HOM05D004597 ORTHO05D005629 4.4e-25 117.5 103 61.2
Thhalv10021501m.g Eutrema salsugineum HOM05D004597 ORTHO05D005629 5.7e-25 117.1 101 58.4
Migut.J00892 Erythranthe guttata HOM05D004597 ORTHO05D005629 7.5e-25 116.7 103 61.2
Duzib150G0058 Durio zibethinus HOM05D004597 ORTHO05D005629 9.8e-25 116.3 101 59.4
Os06g0196300 Oryza sativa ssp. japonica HOM05D004597 ORTHO05D005629 9.8e-25 116.3 103 59.2
Nitab4.5_0001092g0070 Nicotiana tabacum HOM05D004597 ORTHO05D005629 1.3e-24 115.9 103 61.2
SEGI_12051 Sequoiadendron giganteum HOM05D004597 ORTHO05D005629 1.3e-24 115.9 103 61.2
CANSAT56G1179 Cannabis sativa HOM05D004597 ORTHO05D005629 1.7e-24 115.5 103 60.2
Gohir.A08G246600 Gossypium hirsutum HOM05D004597 ORTHO05D005629 2.2e-24 115.2 103 60.2
Gohir.D08G267800 Gossypium hirsutum HOM05D004597 ORTHO05D005629 2.2e-24 115.2 103 60.2
Nitab4.5_0000400g0030 Nicotiana tabacum HOM05D004597 ORTHO05D005629 2.8e-24 114.8 103 60.2
Oeu028117.1 Olea europaea HOM05D004597 ORTHO05D005629 2.8e-24 114.8 101 59.4
Ah.09g229020 Amaranthus hybridus HOM05D004597 ORTHO05D005629 5.9e-22 107.1 103 59.2
SMO146G0055 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 2.3e-21 105.1 103 54.4
DCAR_011918 Daucus carota HOM05D004597 ORTHO05D005629 6.6e-21 103.6 110 52.7
Pp3c25_1840 Physcomitrium patens HOM05D004597 ORTHO05D005629 7.2e-20 100.1 101 50.5
Pp3c2_15400 Physcomitrium patens HOM05D004597 ORTHO05D005629 2.1e-19 98.6 101 51.5
Mapoly0033s0151 Marchantia polymorpha HOM05D004597 ORTHO05D005629 8.0e-19 96.7 103 49.5
Lsat_1_v5_gn_3_58180 Lactuca sativa HOM05D004597 ORTHO05D005629 1.8e-18 95.5 50 88.0
Lsat_1_v5_gn_7_82541 Lactuca sativa HOM05D004597 ORTHO05D005629 1.7e-16 89.0 49 83.7
TPR.G24405 Trifolium pratense HOM05D004597 ORTHO05D005629 4.9e-16 87.4 50 82.0
Lsat_1_v5_gn_6_72620 Lactuca sativa HOM05D004597 ORTHO05D005629 1.4e-15 85.9 49 81.6
Hund26094 Selenicereus undatus HOM05D004597 ORTHO05D005629 1.4e-15 85.9 50 78.0
CBR_g31073 Chara braunii HOM05D004597 ORTHO05D000002 2.4e-15 85.1 99 43.4
SMO239G0145 Selaginella moellendorffii HOM05D004597 ORTHO05D005629 1.1e-12 76.3 102 39.2
Actinidia30251 Actinidia chinensis HOM05D004597 ORTHO05D005629 1.5e-12 75.9 97 46.4
QL11p002682 Quercus lobata HOM05D004597 ORTHO05D005629 1.8e-10 68.9 72 54.2
Hma1.2p1_0169F.1_g074350 Hydrangea macrophylla HOM05D004597 ORTHO05D005629 4.0e-10 67.8 99 46.5
TPR.G12546 Trifolium pratense HOM05D004597 ORTHO05D005629 5.8e-09 63.9 30 100.0
Prupe.1G206600 Prunus persica HOM05D004597 ORTHO05D005629 3.7e-08 61.2 73 49.3
Prupe.3G139200 Prunus persica HOM05D004597 ORTHO05D005629 3.7e-08 61.2 77 48.1
COL.COLO4_22132 Corchorus olitorius HOM05D004597 ORTHO05D005629 4.9e-08 60.8 38 73.7
QL11p002688 Quercus lobata HOM05D004597 ORTHO05D005629 4.9e-08 60.8 30 93.3
Dinv42426 Davidia involucrata HOM05D004597 ORTHO05D005629 1.1e-07 59.7 30 90.0
Lsat_1_v5_gn_5_40881 Lactuca sativa HOM05D004597 ORTHO05D005629 1.9e-07 58.9 31 87.1
Pp3c10_380 Physcomitrium patens HOM05D004597 ORTHO05D005629 2.4e-07 58.5 38 68.4
COL.COLO4_36227 Corchorus olitorius HOM05D004597 ORTHO05D005629 3.2e-07 58.2 30 90.0
Cre10.g422300 Chlamydomonas reinhardtii HOM05D004597 ORTHO05D005629 1.2e-06 56.2 102 32.4
Gorai.004G285400 Gossypium raimondii HOM05D004597 ORTHO05D005629 2.7e-06 55.1 31 80.6
THA.LOC104815153 Tarenaya hassleriana HOM05D004597 ORTHO05D005629 6.0e-06 53.9 101 32.7


User provided reference genes

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