Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7458 Trifolium pratense HOM05D005310 ORTHO05D006920 6.8e-22 106.3 49 100.0
RcHm_v2.0_Chr5g0061601 Rosa chinensis HOM05D005310 ORTHO05D006920 1.1e-11 72.4 38 86.8
Thecc.06G165700 Theobroma cacao HOM05D005310 ORTHO05D006920 1.1e-11 72.4 38 86.8
BcaC09g51481 Brassica carinata HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
A01p10840 Brassica napus HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
C01p12850 Brassica napus HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
BolC1t01261H Brassica oleracea HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
BraA01t01031Z Brassica rapa HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
COL.COLO4_31237 Corchorus olitorius HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
Sed0028201 Sechium edule HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
TPR.G6733 Trifolium pratense HOM05D005310 ORTHO05D006920 1.9e-11 71.6 37 89.2
Aa31LG6G1520 Aethionema arabicum HOM05D005310 ORTHO05D006920 2.4e-11 71.2 37 86.5
arahy.Tifrunner.gnm1.ann1.NMJG4G Arachis hypogaea HOM05D005310 ORTHO05D006920 2.4e-11 71.2 37 86.5
ClCG03G007450 Citrullus lanatus HOM05D005310 ORTHO05D006920 2.4e-11 71.2 37 86.5
MELO3C002677.2 Cucumis melo HOM05D005310 ORTHO05D006920 2.4e-11 71.2 37 86.5
CsaV3_1G033090 Cucumis sativus L. HOM05D005310 ORTHO05D006920 2.4e-11 71.2 37 86.5
GSVIVG01021256001 Vitis vinifera HOM05D005310 ORTHO05D006920 2.4e-11 71.2 37 86.5
AUR62039478 Chenopodium quinoa HOM05D005310 ORTHO05D006920 3.2e-11 70.9 37 86.5
AUR62041821 Chenopodium quinoa HOM05D005310 ORTHO05D006920 3.2e-11 70.9 37 86.5
Duzib192G0594 Durio zibethinus HOM05D005310 ORTHO05D006920 3.2e-11 70.9 38 81.6
Lj1A1175T55 Lonicera japonica HOM05D005310 ORTHO05D006920 4.1e-11 70.5 37 86.5
Manes.16G042900 Manihot esculenta HOM05D005310 ORTHO05D006920 4.1e-11 70.5 37 86.5
CSS0016268 Camellia sinensis var. sinensis HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
CARHR225670 Cardamine hirsuta HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
CiPaw.09G137200 Carya illinoinensis HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 83.8
Ca_17897_v3 Cicer arietinum L. HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Ciclev10018335m.g Citrus clementina HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Dinv12753 Davidia involucrata HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Dinv32339 Davidia involucrata HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
HanXRQChr11g0343901 Helianthus annuus HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Lsat_1_v5_gn_1_110100 Lactuca sativa HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Lj4g0024191 Lotus japonicus HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
MD00G1009300 Malus domestica HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
MD05G1295400 Malus domestica HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Medtr8g087310 Medicago truncatula HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Os02g0234500 Oryza sativa ssp. japonica HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Prupe.4G066900 Prunus persica HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
PGR042G1369 Punica granatum HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
RcHm_v2.0_Chr2g0109871 Rosa chinensis HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
RcHm_v2.0_Chr5g0011641 Rosa chinensis HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Sabra04G0040500 Salix brachista HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Sp7g17520 Schrenkiella parvula HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
SGA_v2.0_scaffold16G07714 Striga asiatica HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
THA.LOC104806167 Tarenaya hassleriana HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 89.2
HPP92_004012 Vanilla planifolia HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
HPP92_004025 Vanilla planifolia HOM05D005310 ORTHO05D006920 5.4e-11 70.1 37 86.5
Atru.chr10.1571 Acer truncatum HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 83.8
Actinidia02744 Actinidia chinensis HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 86.5
Aqoxy1G01994 Aquilegia oxysepala HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 83.8
Gohir.A06G133700 Gossypium hirsutum HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 83.8
Gohir.D06G138800 Gossypium hirsutum HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 83.8
Gorai.010G161400 Gossypium raimondii HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 83.8
Nn3g21104 Nelumbo nucifera HOM05D005310 ORTHO05D006920 7.0e-11 69.7 37 83.8
TAR627G0081 Trochodendron aralioides HOM05D005310 ORTHO05D006920 7.0e-11 69.7 38 84.2
ATR0012G016 Amborella trichopoda HOM05D005310 ORTHO05D006920 9.2e-11 69.3 37 83.8
Glyma.05G161000 Glycine max HOM05D005310 ORTHO05D006920 9.2e-11 69.3 37 83.8
QL05p049965 Quercus lobata HOM05D005310 ORTHO05D006920 9.2e-11 69.3 37 83.8
Hund04397 Selenicereus undatus HOM05D005310 ORTHO05D006920 9.2e-11 69.3 37 83.8
Carub.0007s2242 Capsella rubella HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
Cpa.g.sc7.109 Carica papaya HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 81.1
Eucgr.E02785 Eucalyptus grandis HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
Glyma.08G118400 Glycine max HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
Phvul.002G241100 Phaseolus vulgaris HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
TWI53G0456 Tripterygium wilfordii HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
vmacro16023 Vaccinium macrocarpon HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
VMungo0251G0247 Vigna mungo HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
Zm00001eb204900 Zea mays HOM05D005310 ORTHO05D006920 1.2e-10 68.9 37 83.8
AL7G35440 Arabidopsis lyrata HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
FvH4_3g07310 Fragaria vesca HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
FAN11G0629 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
FAN16G3592 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
FAN21G2773 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
FAN25G3188 Fragaria x ananassa HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
Lalb_Chr12g0204951 Lupinus albus HOM05D005310 ORTHO05D006920 1.6e-10 68.6 36 86.1
PSO210G5690 Papaver somniferum HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 83.8
Psat7g068720 Pisum sativum HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 86.5
Potri.004G061200 Populus trichocarpa HOM05D005310 ORTHO05D006920 1.6e-10 68.6 37 86.5
Hund23016 Selenicereus undatus HOM05D005310 ORTHO05D006920 1.6e-10 68.6 38 81.6
Cc02_g15580 Coffea canephora HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 83.8
DCAR_027984 Daucus carota HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 81.1
Hma1.2p1_2416F.1_g321740 Hydrangea macrophylla HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 81.1
Nitab4.5_0005937g0010 Nicotiana tabacum HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 86.5
Peaxi162Scf00202g01112 Petunia axillaris HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 86.5
SalBow8G4237 Salvia bowleyana HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 83.8
Solyc02g072160.4 Solanum lycopersicum HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 86.5
Sopen02g021140 Solanum pennellii HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 86.5
PGSC0003DMG400028420 Solanum tuberosum HOM05D005310 ORTHO05D006920 2.0e-10 68.2 37 86.5
CAN.G411.52 Capsicum annuum HOM05D005310 ORTHO05D006920 2.7e-10 67.8 37 83.8
Haze_05356 Corylus avellana HOM05D005310 ORTHO05D006920 2.7e-10 67.8 37 83.8
Nitab4.5_0000437g0070 Nicotiana tabacum HOM05D005310 ORTHO05D006920 2.7e-10 67.8 37 83.8
Oeu040921.3 Olea europaea HOM05D005310 ORTHO05D006920 2.7e-10 67.8 37 78.4
SEGI_40960 Sequoiadendron giganteum HOM05D005310 ORTHO05D006920 2.7e-10 67.8 37 78.4
AT4G18810 Arabidopsis thaliana HOM05D005310 ORTHO05D006920 3.5e-10 67.4 37 81.1
EL10Ac8g20559 Beta vulgaris HOM05D005310 ORTHO05D006920 4.6e-10 67.0 37 81.1
CDE04G2110 Ceratophyllum demersum HOM05D005310 ORTHO05D006920 4.6e-10 67.0 37 81.1
ECA248G0338 Erigeron canadensis HOM05D005310 ORTHO05D006920 4.6e-10 67.0 37 81.1
Ah.14g086990 Amaranthus hybridus HOM05D005310 ORTHO05D006920 6.0e-10 66.6 37 81.1
Thhalv10024714m.g Eutrema salsugineum HOM05D005310 ORTHO05D006920 6.0e-10 66.6 37 81.1
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 6.0e-10 66.6 37 81.1
AagrBONN_evm.TU.Sc2ySwM_362.2005 Anthoceros agrestis HOM05D005310 ORTHO05D006920 7.8e-10 66.2 37 78.4
unitig_0.g743 Utricularia gibba HOM05D005310 ORTHO05D006920 7.8e-10 66.2 37 78.4
Mapoly0037s0097 Marchantia polymorpha HOM05D005310 ORTHO05D006920 1.0e-09 65.9 37 78.4
Prupe.7G223300 Prunus persica HOM05D005310 ORTHO05D006920 1.0e-09 65.9 36 83.3
Migut.M01009 Erythranthe guttata HOM05D005310 ORTHO05D006920 1.3e-09 65.5 37 78.4
Rhsim02G0147000 Rhododendron simsii HOM05D005310 ORTHO05D006920 3.9e-09 63.9 35 82.9
SMO119G0157 Selaginella moellendorffii HOM05D005310 ORTHO05D006920 3.9e-09 63.9 37 75.7
Sc05g0006870 Simmondsia chinensis HOM05D005310 ORTHO05D006920 3.9e-09 63.9 37 73.0
Pp3c26_9450 Physcomitrium patens HOM05D005310 ORTHO05D006920 1.1e-08 62.4 36 72.2


User provided reference genes

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