Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g073335 Medicago truncatula HOM05D001594 ORTHO05D006997 2.8e-31 137.9 65 100.0
TPR.G13734 Trifolium pratense HOM05D001594 ORTHO05D006997 2.8e-31 137.9 65 100.0
TPR.G7422 Trifolium pratense HOM05D001594 ORTHO05D006997 2.8e-31 137.9 65 100.0
Psat4g103800 Pisum sativum HOM05D001594 ORTHO05D006997 8.1e-31 136.3 65 98.5
Ca_02854_v3 Cicer arietinum L. HOM05D001594 ORTHO05D006997 5.3e-30 133.7 65 96.9
Glyma.16G116200 Glycine max HOM05D001594 ORTHO05D006997 2.2e-28 128.3 65 90.8
Phvul.003G270100 Phaseolus vulgaris HOM05D001594 ORTHO05D006997 2.2e-28 128.3 65 90.8
Lalb_Chr05g0229641 Lupinus albus HOM05D001594 ORTHO05D006997 8.4e-28 126.3 65 89.2
Lj4g0005107 Lotus japonicus HOM05D001594 ORTHO05D006997 1.4e-27 125.6 63 88.9
arahy.Tifrunner.gnm1.ann1.MXF7V0 Arachis hypogaea HOM05D001594 ORTHO05D006997 9.3e-27 122.9 65 86.2
arahy.Tifrunner.gnm1.ann1.QEV1Q9 Arachis hypogaea HOM05D001594 ORTHO05D006997 9.3e-27 122.9 65 87.7
arahy.Tifrunner.gnm1.ann1.YT33SS Arachis hypogaea HOM05D001594 ORTHO05D006997 9.3e-27 122.9 65 86.2
VMungo0251G3380 Vigna mungo HOM05D001594 ORTHO05D006997 1.6e-26 122.1 65 84.6
Glyma.11G085900 Glycine max HOM05D001594 ORTHO05D006997 2.7e-26 121.3 65 81.5
Lalb_Chr16g0380021 Lupinus albus HOM05D001594 ORTHO05D006997 1.3e-25 119.0 64 82.8
Glyma.09G198200 Glycine max HOM05D001594 ORTHO05D006997 3.9e-25 117.5 64 84.4
Lj2g0008891 Lotus japonicus HOM05D001594 ORTHO05D006997 6.7e-25 116.7 65 80.0
TPR.G33895 Trifolium pratense HOM05D001594 ORTHO05D006997 6.7e-25 116.7 65 78.5
Ca_24982_v3 Cicer arietinum L. HOM05D001594 ORTHO05D006997 9.6e-24 112.8 64 76.6
Psat2g148240 Pisum sativum HOM05D001594 ORTHO05D006997 9.6e-24 112.8 64 78.1
VMungo1215G2914 Vigna mungo HOM05D001594 ORTHO05D006997 1.3e-23 112.5 65 76.9
Phvul.002G116651 Phaseolus vulgaris HOM05D001594 ORTHO05D006997 3.7e-23 110.9 64 78.1
Medtr5g024210 Medicago truncatula HOM05D001594 ORTHO05D006997 4.8e-23 110.5 64 76.6
Atru.chr3.133 Acer truncatum HOM05D001594 ORTHO05D006997 3.1e-22 107.8 59 81.4
MD15G1231200 Malus domestica HOM05D001594 ORTHO05D006997 4.0e-22 107.5 64 71.9
CiPaw.07G002800 Carya illinoinensis HOM05D001594 ORTHO05D006997 2.6e-21 104.8 60 80.0
Haze_03660 Corylus avellana HOM05D001594 ORTHO05D006997 5.8e-21 103.6 61 75.4
Dinv08163 Davidia involucrata HOM05D001594 ORTHO05D006997 5.8e-21 103.6 64 71.9
Manes.02G114000 Manihot esculenta HOM05D001594 ORTHO05D006997 1.3e-20 102.4 62 74.2
Lj4C236T8 Lonicera japonica HOM05D001594 ORTHO05D006997 1.7e-20 102.1 64 71.9
Thecc.01G005500 Theobroma cacao HOM05D001594 ORTHO05D006997 2.2e-20 101.7 64 73.4
Hma1.2p1_0085F.1_g044660 Hydrangea macrophylla HOM05D001594 ORTHO05D006997 2.9e-20 101.3 64 71.9
Prupe.7G183000 Prunus persica HOM05D001594 ORTHO05D006997 2.9e-20 101.3 64 68.8
MELO3C013725.2 Cucumis melo HOM05D001594 ORTHO05D006997 3.8e-20 100.9 64 67.2
Duzib147G0106 Durio zibethinus HOM05D001594 ORTHO05D006997 3.8e-20 100.9 64 73.4
Gohir.D03G002100 Gossypium hirsutum HOM05D001594 ORTHO05D006997 4.9e-20 100.5 61 73.8
Gorai.003G002400 Gossypium raimondii HOM05D001594 ORTHO05D006997 4.9e-20 100.5 61 73.8
QL06p052962 Quercus lobata HOM05D001594 ORTHO05D006997 4.9e-20 100.5 61 72.1
CSS0026334 Camellia sinensis var. sinensis HOM05D001594 ORTHO05D006997 6.5e-20 100.1 63 68.3
CsaV3_3G000310 Cucumis sativus L. HOM05D001594 ORTHO05D006997 6.5e-20 100.1 63 66.7
FvH4_1g10310 Fragaria vesca HOM05D001594 ORTHO05D006997 6.5e-20 100.1 64 71.9
FAN19G0400 Fragaria x ananassa HOM05D001594 ORTHO05D006997 6.5e-20 100.1 64 71.9
FAN26G0560 Fragaria x ananassa HOM05D001594 ORTHO05D006997 6.5e-20 100.1 64 71.9
FAN28G0917 Fragaria x ananassa HOM05D001594 ORTHO05D006997 6.5e-20 100.1 64 71.9
Potri.005G101600 Populus trichocarpa HOM05D001594 ORTHO05D006997 8.4e-20 99.8 63 71.4
Sed0003551 Sechium edule HOM05D001594 ORTHO05D006997 8.4e-20 99.8 64 65.6
ClCG10G000280 Citrullus lanatus HOM05D001594 ORTHO05D006997 1.1e-19 99.4 63 65.1
Aqoxy6G01623 Aquilegia oxysepala HOM05D001594 ORTHO05D006997 1.4e-19 99.0 64 67.2
Sabra05G0083900 Salix brachista HOM05D001594 ORTHO05D006997 1.4e-19 99.0 63 71.4
Actinidia22898 Actinidia chinensis HOM05D001594 ORTHO05D006997 1.9e-19 98.6 63 68.3
TWI09G0261 Tripterygium wilfordii HOM05D001594 ORTHO05D006997 1.9e-19 98.6 63 71.4
RcHm_v2.0_Chr2g0097151 Rosa chinensis HOM05D001594 ORTHO05D006997 2.5e-19 98.2 64 70.3
TAR628G0455 Trochodendron aralioides HOM05D001594 ORTHO05D006997 2.5e-19 98.2 61 67.2
FAN23G2317 Fragaria x ananassa HOM05D001594 ORTHO05D006997 3.2e-19 97.8 63 71.4
MBI08_g12259_MAGBIO Magnolia biondii HOM05D001594 ORTHO05D006997 3.2e-19 97.8 64 68.8
Nn5g30990 Nelumbo nucifera HOM05D001594 ORTHO05D006997 3.2e-19 97.8 64 65.6
GSVIVG01026640001 Vitis vinifera HOM05D001594 ORTHO05D006997 3.2e-19 97.8 64 68.8
Gohir.A02G177700 Gossypium hirsutum HOM05D001594 ORTHO05D006997 4.2e-19 97.4 64 70.3
COL.COLO4_22550 Corchorus olitorius HOM05D001594 ORTHO05D006997 7.1e-19 96.7 61 68.9
Rhsim10G0195800 Rhododendron simsii HOM05D001594 ORTHO05D006997 7.1e-19 96.7 62 67.7
MSTRG.2742 Avicennia marina HOM05D001594 ORTHO05D006997 9.3e-19 96.3 64 65.6
CANSAT25G0201 Cannabis sativa HOM05D001594 ORTHO05D006997 9.3e-19 96.3 64 67.2
Ciclev10024783m.g Citrus clementina HOM05D001594 ORTHO05D006997 2.1e-18 95.1 53 79.2
Actinidia17359 Actinidia chinensis HOM05D001594 ORTHO05D006997 3.5e-18 94.4 61 68.9
SalBow3G0355 Salvia bowleyana HOM05D001594 ORTHO05D006997 3.5e-18 94.4 63 65.1
Eucgr.J02536 Eucalyptus grandis HOM05D001594 ORTHO05D006997 6.0e-18 93.6 57 70.2
PGR083G2182 Punica granatum HOM05D001594 ORTHO05D006997 1.8e-17 92.0 62 69.4
DCAR_014311 Daucus carota HOM05D001594 ORTHO05D006997 3.9e-17 90.9 63 60.3
ECA238G2681 Erigeron canadensis HOM05D001594 ORTHO05D006997 3.9e-17 90.9 64 64.1
SalBow3G3852 Salvia bowleyana HOM05D001594 ORTHO05D006997 6.7e-17 90.1 63 63.5
HanXRQChr14g0442541 Helianthus annuus HOM05D001594 ORTHO05D006997 1.5e-16 89.0 64 60.9
PSO541G4323 Papaver somniferum HOM05D001594 ORTHO05D006997 1.9e-16 88.6 59 64.4
PSO675G2586 Papaver somniferum HOM05D001594 ORTHO05D006997 1.9e-16 88.6 59 64.4
SGA_v2.0_scaffold108G30978 Striga asiatica HOM05D001594 ORTHO05D006997 1.9e-16 88.6 60 61.7
Cpa.g.sc365.6 Carica papaya HOM05D001594 ORTHO05D006997 7.4e-16 86.7 60 61.7
vmacro20632 Vaccinium macrocarpon HOM05D001594 ORTHO05D006997 1.6e-15 85.5 63 63.5
AUR62005762 Chenopodium quinoa HOM05D001594 ORTHO05D006997 2.8e-15 84.7 60 55.0
AUR62028795 Chenopodium quinoa HOM05D001594 ORTHO05D006997 4.8e-15 84.0 60 55.0
Aa31LG6G12530 Aethionema arabicum HOM05D001594 ORTHO05D006997 1.1e-14 82.8 64 54.7
Cc07_g11860 Coffea canephora HOM05D001594 ORTHO05D006997 1.8e-14 82.0 59 61.0
Peaxi162Scf01051g00145 Petunia axillaris HOM05D001594 ORTHO05D006997 1.8e-14 82.0 51 66.7
Hund03603 Selenicereus undatus HOM05D001594 ORTHO05D006997 1.8e-14 82.0 57 54.4
THA.LOC104804294 Tarenaya hassleriana HOM05D001594 ORTHO05D006997 4.1e-14 80.9 64 51.6
Migut.H02205 Erythranthe guttata HOM05D001594 ORTHO05D006997 5.3e-14 80.5 64 57.8
CDE05G1839 Ceratophyllum demersum HOM05D001594 ORTHO05D006997 6.9e-14 80.1 59 59.3
Thhalv10024291m.g Eutrema salsugineum HOM05D001594 ORTHO05D006997 1.2e-13 79.3 64 56.2
EL10Ac6g13185 Beta vulgaris HOM05D001594 ORTHO05D006997 1.5e-13 79.0 60 53.3
Nitab4.5_0006839g0020 Nicotiana tabacum HOM05D001594 ORTHO05D006997 2.0e-13 78.6 51 64.7
Lsat_1_v5_gn_2_73661 Lactuca sativa HOM05D001594 ORTHO05D006997 2.6e-13 78.2 53 60.4
THA.LOC104819720 Tarenaya hassleriana HOM05D001594 ORTHO05D006997 2.6e-13 78.2 61 54.1
BcaNung04338 Brassica carinata HOM05D001594 ORTHO05D006997 4.5e-13 77.4 64 54.7
Nitab4.5_0000702g0160 Nicotiana tabacum HOM05D001594 ORTHO05D006997 5.9e-13 77.0 51 62.7
Carub.0007s0476 Capsella rubella HOM05D001594 ORTHO05D006997 1.0e-12 76.3 64 53.1
AL7G15600 Arabidopsis lyrata HOM05D001594 ORTHO05D006997 2.9e-12 74.7 64 51.6
Solyc02g082690.3 Solanum lycopersicum HOM05D001594 ORTHO05D006997 2.9e-12 74.7 51 58.8
A03p63680 Brassica napus HOM05D001594 ORTHO05D006997 3.8e-12 74.3 65 55.4
BraA03t15439Z Brassica rapa HOM05D001594 ORTHO05D006997 3.8e-12 74.3 65 55.4
Sopen02g027440 Solanum pennellii HOM05D001594 ORTHO05D006997 3.8e-12 74.3 51 58.8
C07p61240 Brassica napus HOM05D001594 ORTHO05D006997 5.0e-12 73.9 65 55.4
BolC7t46550H Brassica oleracea HOM05D001594 ORTHO05D006997 5.0e-12 73.9 65 55.4
Sp7g33340 Schrenkiella parvula HOM05D001594 ORTHO05D006997 1.4e-11 72.4 64 50.0
CARHR243900 Cardamine hirsuta HOM05D001594 ORTHO05D006997 1.9e-11 72.0 64 50.0
HPP92_014561 Vanilla planifolia HOM05D001594 ORTHO05D006997 2.5e-11 71.6 63 50.8
Zm00001eb073880 Zea mays HOM05D001594 ORTHO05D006997 1.2e-10 69.3 60 50.0
Os04g0564700 Oryza sativa ssp. japonica HOM05D001594 ORTHO05D006997 6.1e-10 67.0 55 52.7
BcaNung05033 Brassica carinata HOM05D001594 ORTHO05D006997 1.0e-09 66.2 60 48.3
Sc16g0001660 Simmondsia chinensis HOM05D001594 ORTHO05D006997 5.1e-09 63.9 60 45.0
AT4G35560 Arabidopsis thaliana HOM05D001594 ORTHO05D006997 8.7e-09 63.2 64 46.9
ATR0807G039 Amborella trichopoda HOM05D001594 ORTHO05D006997 4.3e-08 60.8 41 63.4
SEGI_01505 Sequoiadendron giganteum HOM05D001594 ORTHO05D006997 2.8e-07 58.2 59 42.4


User provided reference genes

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