Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 2.1e-45 185.3 89 100.0
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.2e-34 148.7 87 87.4
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 8.5e-31 136.7 86 80.2
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.0e-28 129.8 86 76.7
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 8.8e-28 126.7 86 76.7
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 3.7e-26 121.3 67 89.6
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.8e-25 119.0 87 73.6
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 9.1e-25 116.7 84 70.2
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.2e-24 116.3 86 69.8
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.0e-24 115.5 91 65.9
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 6.8e-20 100.5 85 61.2
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 2.0e-19 99.0 87 56.3
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 2.0e-19 99.0 87 56.3
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 2.0e-19 99.0 85 60.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.6e-19 98.6 87 58.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 3.4e-19 98.2 89 59.6
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 5.7e-19 97.4 87 52.9
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 7.5e-19 97.1 86 58.1
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 9.8e-19 96.7 84 61.9
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 1.3e-18 96.3 85 61.2
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.3e-18 96.3 85 58.8
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.7e-18 95.9 85 58.8
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 1.7e-18 95.9 86 57.0
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 2.2e-18 95.5 92 55.4
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.8e-18 95.1 86 54.7
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 4.8e-18 94.4 86 54.7
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 4.8e-18 94.4 85 57.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.3e-18 94.0 89 56.2
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.3e-18 94.0 89 56.2
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 8.3e-18 93.6 83 56.6
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.1e-17 93.2 83 56.6
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 1.4e-17 92.8 83 54.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.8e-17 92.4 89 55.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.8e-17 92.4 83 55.4
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.8e-17 92.4 86 54.7
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 3.1e-17 91.7 83 54.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.1e-17 91.7 87 52.9
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 3.1e-17 91.7 87 54.0
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 3.1e-17 91.7 83 59.0
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 4.1e-17 91.3 83 56.6
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 4.1e-17 91.3 86 52.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 5.4e-17 90.9 76 56.6
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 5.4e-17 90.9 89 51.7
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.4e-17 90.9 89 55.1
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 7.0e-17 90.5 84 54.8
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 9.1e-17 90.1 88 53.4
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 9.1e-17 90.1 89 53.9
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.2e-16 89.7 85 55.3
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 1.2e-16 89.7 83 55.4
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 2.0e-16 89.0 83 54.2
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 2.7e-16 88.6 93 50.5
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.7e-16 88.6 84 50.0
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.5e-16 88.2 87 52.9
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 3.5e-16 88.2 84 52.4
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 4.5e-16 87.8 85 48.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 4.5e-16 87.8 85 56.5
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.5e-16 87.8 87 52.9
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 4.5e-16 87.8 87 51.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 7.7e-16 87.0 79 55.7
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 7.7e-16 87.0 79 55.7
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 7.7e-16 87.0 89 49.4
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 7.7e-16 87.0 89 51.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.3e-15 86.3 86 54.7
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.3e-15 86.3 82 53.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 1.3e-15 86.3 87 50.6
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.3e-15 86.3 97 49.5
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.3e-15 86.3 88 48.9
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.7e-15 85.9 87 54.0
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 2.3e-15 85.5 85 50.6
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.3e-15 85.5 92 52.2
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 2.9e-15 85.1 83 54.2
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.9e-15 85.1 86 54.7
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.8e-15 84.7 90 53.3
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 3.8e-15 84.7 85 50.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 6.6e-15 84.0 76 52.6
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 8.6e-15 83.6 85 50.6
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.1e-14 83.2 93 47.3
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.1e-14 83.2 91 53.8
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.5e-14 82.8 79 53.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.5e-14 82.8 95 49.5
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.9e-14 82.4 86 44.2
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.9e-14 82.4 86 44.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.9e-14 82.4 87 50.6
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.5e-14 82.0 100 46.0
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.5e-14 82.0 79 53.2
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 2.5e-14 82.0 91 45.1
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 2.5e-14 82.0 76 55.3
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 2.5e-14 82.0 84 50.0
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.5e-14 82.0 81 51.9
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-14 81.6 78 55.1
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.3e-14 81.6 78 55.1
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.3e-14 81.6 88 47.7
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.2e-14 81.3 90 46.7
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 4.2e-14 81.3 77 51.9
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 5.5e-14 80.9 83 53.0
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 5.5e-14 80.9 81 50.6
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.5e-14 80.9 89 43.8
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 7.2e-14 80.5 83 50.6
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.2e-13 79.7 87 48.3
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.2e-13 79.7 76 51.3
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 1.6e-13 79.3 86 46.5
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 1.6e-13 79.3 90 50.0
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.1e-13 79.0 78 51.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 3.6e-13 78.2 75 48.0
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 4.7e-13 77.8 86 54.7
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 6.1e-13 77.4 76 50.0
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 8.0e-13 77.0 86 43.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.0e-12 76.6 89 50.6
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.0e-12 76.6 86 53.5
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.4e-12 76.3 91 46.2
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.8e-12 75.9 88 51.1
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.8e-12 75.9 78 48.7
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.8e-12 75.9 94 47.9
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 3.0e-12 75.1 80 47.5
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 3.0e-12 75.1 88 50.0
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 3.0e-12 75.1 94 43.6
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.0e-12 74.7 63 54.0
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 4.0e-12 74.7 78 50.0
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 6.8e-12 73.9 76 47.4
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 8.9e-12 73.6 91 42.9
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.5e-11 72.8 87 48.3
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 2.6e-11 72.0 77 41.6
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 7.5e-11 70.5 86 50.0
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 7.5e-11 70.5 86 50.0
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.3e-10 69.7 77 46.8
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.7e-10 69.3 86 50.0
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-10 69.3 86 48.8
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-10 69.3 86 48.8
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.7e-10 69.3 86 50.0
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.4e-09 66.2 87 41.4
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.1e-09 64.7 77 41.6
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.1e-09 64.7 87 42.5
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 7.0e-09 63.9 51 52.9
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.0e-08 62.4 87 43.7
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.7e-08 62.0 97 36.1
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 3.5e-08 61.6 86 41.9
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 3.5e-08 61.6 89 43.8
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 7.8e-08 60.5 67 52.2
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.0e-07 60.1 85 40.0
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.3e-07 58.9 67 43.3
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 2.9e-07 58.5 97 34.0
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.9e-07 58.2 54 51.9
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 5.0e-07 57.8 68 47.1
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 8.6e-07 57.0 74 47.3
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.5e-06 55.5 90 42.2
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 5.6e-06 54.3 51 47.1
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 5.6e-06 54.3 102 36.3
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 5.6e-06 54.3 102 36.3
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 5.6e-06 54.3 102 36.3


User provided reference genes

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