Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 7.6e-269 929.9 454 100.0
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 2.7e-234 815.1 428 93.0
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 1.2e-27 128.6 244 37.7
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 7.7e-27 125.9 245 36.3
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 5.1e-23 113.2 102 57.8
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.1e-22 112.1 241 35.3
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 5.0e-18 96.7 166 39.8
TPR.G22781 Trifolium pratense HOM05D000001 ORTHO05D009773 6.5e-18 96.3 144 39.6
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 2.5e-17 94.4 139 44.6
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 1.2e-16 92.0 166 39.8
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 2.7e-16 90.9 166 38.6
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 1.4e-15 88.6 129 46.5
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 1.8e-15 88.2 131 44.3
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 3.0e-15 87.4 166 39.2
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 3.0e-15 87.4 166 37.3
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 5.2e-15 86.7 136 43.4
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.5e-14 85.1 129 43.4
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 1.5e-14 85.1 131 43.5
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 2.6e-14 84.3 166 38.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 4.4e-14 83.6 132 43.9
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 1.3e-13 82.0 139 42.4
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.2e-13 81.3 129 42.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 2.2e-13 81.3 129 42.6
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 2.8e-13 80.9 130 43.1
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 2.8e-13 80.9 129 43.4
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 4.8e-13 80.1 131 42.7
Ca_10136_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 6.3e-13 79.7 147 34.0
Ca_30624_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 6.3e-13 79.7 147 34.0
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 6.3e-13 79.7 131 43.5
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 6.3e-13 79.7 129 43.4
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.1e-12 79.0 129 41.9
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.4e-12 78.6 131 42.7
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 1.4e-12 78.6 129 41.9
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.4e-12 78.6 130 42.3
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.4e-12 78.6 130 42.3
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 1.4e-12 78.6 131 41.2
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.8e-12 78.2 143 42.0
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 1.8e-12 78.2 204 32.8
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 1.8e-12 78.2 129 41.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 4.1e-12 77.0 139 39.6
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 4.1e-12 77.0 131 40.5
Glyma.10G094300 Glycine max HOM05D000001 ORTHO05D009773 4.1e-12 77.0 175 32.6
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 4.1e-12 77.0 138 39.9
VMungo0720G2627 Vigna mungo HOM05D000001 ORTHO05D009773 4.1e-12 77.0 158 33.5
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 5.3e-12 76.6 132 43.2
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 5.3e-12 76.6 130 41.5
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 7.0e-12 76.3 125 43.2
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 7.0e-12 76.3 130 41.5
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 9.1e-12 75.9 101 38.6
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 9.1e-12 75.9 93 47.3
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.0e-11 74.7 131 42.0
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 2.0e-11 74.7 168 37.5
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.0e-11 74.7 101 39.6
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 2.6e-11 74.3 130 40.8
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 3.5e-11 73.9 131 41.2
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 4.5e-11 73.6 137 39.4
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 4.5e-11 73.6 132 42.4
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 4.5e-11 73.6 132 42.4
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 7.7e-11 72.8 130 40.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 7.7e-11 72.8 129 40.3
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 1.0e-10 72.4 101 40.6
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 1.3e-10 72.0 130 40.0
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.3e-10 72.0 165 34.5
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.7e-10 71.6 130 39.2
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 2.2e-10 71.2 141 39.0
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 2.2e-10 71.2 131 39.7
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 2.9e-10 70.9 132 40.2
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 3.8e-10 70.5 125 41.6
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 3.8e-10 70.5 145 37.2
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 3.8e-10 70.5 101 38.6
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 5.0e-10 70.1 130 40.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 5.0e-10 70.1 131 38.9
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 5.0e-10 70.1 145 37.2
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 5.0e-10 70.1 130 37.7
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.5e-10 69.7 131 41.2
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 6.5e-10 69.7 131 41.2
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 1.1e-09 68.9 130 40.8
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 1.1e-09 68.9 130 40.0
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.1e-09 68.9 165 33.9
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 1.5e-09 68.6 140 40.0
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 1.9e-09 68.2 140 39.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.9e-09 68.2 132 40.9
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 4.2e-09 67.0 130 39.2
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 4.2e-09 67.0 130 39.2
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 4.2e-09 67.0 130 40.0
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 4.2e-09 67.0 130 40.0
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 4.2e-09 67.0 101 36.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 4.2e-09 67.0 132 40.2
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 7.2e-09 66.2 140 39.3
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 9.4e-09 65.9 120 41.7
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 9.4e-09 65.9 130 39.2
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 9.4e-09 65.9 99 37.4
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.2e-08 65.5 140 38.6
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 1.2e-08 65.5 140 38.6
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 1.6e-08 65.1 130 36.2
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 2.7e-08 64.3 131 37.4
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 3.6e-08 63.9 178 33.7
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 3.6e-08 63.9 130 39.2
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 3.6e-08 63.9 132 38.6
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 4.7e-08 63.5 101 32.7
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 6.1e-08 63.2 130 38.5
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 8.0e-08 62.8 127 32.3
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 8.0e-08 62.8 130 38.5
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 1.0e-07 62.4 132 39.4
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.0e-07 62.4 101 35.6
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 1.0e-07 62.4 129 39.5
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 1.8e-07 61.6 132 38.6
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 1.8e-07 61.6 130 38.5
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 2.3e-07 61.2 73 47.9
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 3.0e-07 60.8 128 39.1
Manes.13G108400 Manihot esculenta HOM05D000001 ORTHO05D009773 4.0e-07 60.5 151 29.1
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 6.8e-07 59.7 170 34.7
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 8.8e-07 59.3 143 33.6
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 2.0e-06 58.2 120 31.7
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 2.6e-06 57.8 131 37.4
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 7.5e-06 56.2 134 35.1


User provided reference genes

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