Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 1.4e-47 192.6 94 100.0
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.0e-46 188.7 94 96.8
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 2.6e-46 188.3 94 95.7
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 5.8e-46 187.2 94 95.7
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.7e-45 185.7 94 93.6
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.7e-45 185.7 94 93.6
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 4.9e-45 184.1 94 91.5
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.1e-44 183.0 94 91.5
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 1.1e-44 183.0 94 91.5
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.9e-44 182.2 94 91.5
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 4.2e-44 181.0 94 90.4
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 5.4e-44 180.6 94 90.4
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 9.3e-44 179.9 94 91.5
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.2e-43 179.5 94 91.5
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 2.7e-43 178.3 94 91.5
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 2.7e-43 178.3 94 90.4
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 3.5e-43 177.9 94 87.2
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 6.0e-43 177.2 94 87.2
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 6.0e-43 177.2 94 87.2
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 6.0e-43 177.2 94 87.2
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 6.0e-43 177.2 94 87.2
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 6.0e-43 177.2 94 87.2
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 6.0e-43 177.2 94 87.2
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 7.8e-43 176.8 94 88.3
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 7.8e-43 176.8 94 87.2
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 7.8e-43 176.8 94 87.2
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 7.8e-43 176.8 94 87.2
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.0e-42 176.4 94 85.1
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 1.0e-42 176.4 94 88.3
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 1.0e-42 176.4 94 87.2
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.0e-42 176.4 94 86.2
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 1.0e-42 176.4 94 89.4
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.3e-42 176.0 94 87.2
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.3e-42 176.0 94 86.2
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 2.3e-42 175.3 94 87.2
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.3e-42 175.3 94 87.2
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 3.0e-42 174.9 94 87.2
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 3.0e-42 174.9 94 87.2
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 3.0e-42 174.9 94 87.2
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 3.0e-42 174.9 94 87.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 3.9e-42 174.5 94 88.3
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 3.9e-42 174.5 94 86.2
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 5.1e-42 174.1 94 86.2
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 6.6e-42 173.7 94 84.0
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 6.6e-42 173.7 94 84.0
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 6.6e-42 173.7 94 85.1
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 8.7e-42 173.3 94 85.1
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 8.7e-42 173.3 94 86.2
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 8.7e-42 173.3 94 88.3
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 8.7e-42 173.3 94 86.2
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 8.7e-42 173.3 94 86.2
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 8.7e-42 173.3 94 87.2
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.1e-41 172.9 94 84.0
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 1.1e-41 172.9 94 85.1
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 1.5e-41 172.6 94 87.2
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.9e-41 172.2 94 86.2
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.9e-41 172.2 94 85.1
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 2.5e-41 171.8 94 84.0
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.5e-41 171.8 94 87.2
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.5e-41 171.8 94 87.2
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 2.5e-41 171.8 94 84.0
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 2.5e-41 171.8 94 87.2
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 3.3e-41 171.4 94 86.2
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 3.3e-41 171.4 94 85.1
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 3.3e-41 171.4 94 85.1
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 3.3e-41 171.4 94 85.1
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 3.3e-41 171.4 94 85.1
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 3.3e-41 171.4 94 85.1
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 7.3e-41 170.2 94 83.0
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 7.3e-41 170.2 94 83.0
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 9.6e-41 169.9 94 86.2
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 9.6e-41 169.9 94 84.0
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.3e-40 169.5 94 83.0
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.3e-40 169.5 94 85.1
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.3e-40 169.5 94 81.9
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 1.6e-40 169.1 94 83.0
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 1.6e-40 169.1 94 83.0
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.1e-40 168.7 94 83.0
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.1e-40 168.7 94 83.0
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.1e-40 168.7 94 85.1
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 2.1e-40 168.7 94 83.0
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 2.8e-40 168.3 94 83.0
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.8e-40 168.3 94 83.0
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.8e-40 168.3 94 83.0
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 2.8e-40 168.3 94 83.0
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 2.8e-40 168.3 94 81.9
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 3.6e-40 167.9 94 80.9
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 3.6e-40 167.9 94 81.9
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 4.8e-40 167.5 94 83.0
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 4.8e-40 167.5 94 83.0
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 6.2e-40 167.2 94 84.0
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 8.1e-40 166.8 94 81.9
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 8.1e-40 166.8 94 81.9
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.1e-39 166.4 94 81.9
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.1e-39 166.4 94 81.9
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 1.4e-39 166.0 94 84.0
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 1.4e-39 166.0 94 81.9
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 1.8e-39 165.6 94 81.9
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.3e-39 164.1 94 80.9
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 1.2e-38 162.9 94 80.9
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 1.2e-38 162.9 94 79.8
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 1.5e-38 162.5 94 78.7
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 2.0e-38 162.2 94 80.9
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 5.8e-38 160.6 94 83.0
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 7.6e-38 160.2 94 83.0
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 7.6e-38 160.2 94 83.0
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 9.9e-38 159.8 94 79.8
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 1.7e-37 159.1 94 81.9
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 6.4e-37 157.1 94 76.6
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 8.4e-37 156.8 94 80.9
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 2.4e-36 155.2 94 79.8
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 5.4e-36 154.1 94 76.6
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 9.3e-36 153.3 86 83.7
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.2e-35 152.9 94 74.5
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 7.9e-35 150.2 94 73.4
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.4e-31 139.4 94 72.3
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 2.4e-31 138.7 94 72.3
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 1.5e-30 136.0 80 82.5
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 1.7e-29 132.5 94 70.2
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 5.5e-28 127.5 94 64.9
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 2.7e-27 125.2 81 80.2
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.3e-26 122.9 94 63.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.4e-20 102.8 92 53.3
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 5.5e-20 100.9 56 87.5
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 7.1e-20 100.5 56 85.7
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.2e-19 99.8 56 83.9
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.2e-19 99.8 55 87.3
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.6e-19 99.4 56 85.7
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 2.1e-19 99.0 56 85.7
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 4.6e-19 97.8 64 76.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 8.7e-18 93.6 57 71.9
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.7e-08 62.8 141 34.8
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.6e-06 55.5 39 64.1


User provided reference genes

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