Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.3e-27 125.6 59 100.0
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 1.8e-24 115.2 56 92.9
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 2.3e-24 114.8 59 89.8
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 2.3e-24 114.8 56 92.9
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 3.0e-24 114.4 56 94.6
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 3.0e-24 114.4 56 94.6
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 5.1e-24 113.6 56 92.9
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.5e-23 112.1 56 91.1
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 2.5e-23 111.3 56 89.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 4.3e-23 110.5 55 90.9
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 5.7e-23 110.2 55 89.1
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 1.6e-22 108.6 56 89.3
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 1.4e-21 105.5 57 84.2
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.4e-21 105.5 57 84.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.4e-21 104.8 58 81.0
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 4.1e-21 104.0 57 82.5
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 6.9e-21 103.2 57 82.5
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 6.9e-21 103.2 57 82.5
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.2e-20 102.4 55 81.8
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 1.5e-20 102.1 55 83.6
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 2.0e-20 101.7 54 85.2
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 2.0e-20 101.7 54 83.3
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.0e-20 101.7 54 85.2
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.6e-20 101.3 55 81.8
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 2.6e-20 101.3 57 82.5
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 2.6e-20 101.3 55 78.2
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 2.6e-20 101.3 55 81.8
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 2.6e-20 101.3 55 81.8
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 5.9e-20 100.1 57 77.2
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.9e-20 100.1 55 80.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.9e-20 100.1 55 80.0
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.9e-20 100.1 55 80.0
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 5.9e-20 100.1 55 80.0
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 5.9e-20 100.1 54 81.5
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 7.7e-20 99.8 57 77.2
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 1.7e-19 98.6 55 80.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.7e-19 98.6 54 79.6
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.2e-19 98.2 56 76.8
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.9e-19 97.8 56 76.8
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 3.8e-19 97.4 55 76.4
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 3.8e-19 97.4 54 79.6
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 5.0e-19 97.1 55 76.4
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 6.5e-19 96.7 55 76.4
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 6.5e-19 96.7 55 78.2
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 6.5e-19 96.7 55 78.2
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 8.5e-19 96.3 59 71.2
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 1.1e-18 95.9 57 73.7
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.1e-18 95.9 56 76.8
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.1e-18 95.9 56 76.8
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.1e-18 95.9 56 76.8
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 1.1e-18 95.9 56 76.8
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.4e-18 95.5 54 77.8
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 1.4e-18 95.5 55 76.4
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.9e-18 95.1 54 79.6
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.9e-18 95.1 54 79.6
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.9e-18 95.1 56 73.2
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 1.9e-18 95.1 54 79.6
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.5e-18 94.7 59 71.2
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.5e-18 94.7 59 69.5
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 2.5e-18 94.7 59 69.5
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 2.5e-18 94.7 59 69.5
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 2.5e-18 94.7 59 69.5
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 2.5e-18 94.7 54 75.9
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 2.5e-18 94.7 54 75.9
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 2.5e-18 94.7 56 76.8
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 2.5e-18 94.7 56 75.0
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.5e-18 94.7 55 74.5
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 3.2e-18 94.4 59 69.5
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 3.2e-18 94.4 59 69.5
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 3.2e-18 94.4 59 69.5
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.2e-18 94.4 56 75.0
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 3.2e-18 94.4 54 77.8
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 4.2e-18 94.0 57 71.9
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 4.2e-18 94.0 54 75.9
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 5.5e-18 93.6 59 69.5
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 7.2e-18 93.2 59 67.8
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 7.2e-18 93.2 54 74.1
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 7.2e-18 93.2 56 75.0
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 7.2e-18 93.2 57 70.2
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 7.2e-18 93.2 59 67.8
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 9.4e-18 92.8 55 74.5
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 9.4e-18 92.8 55 72.7
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 1.2e-17 92.4 57 71.9
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.2e-17 92.4 59 69.5
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.2e-17 92.4 56 73.2
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 1.6e-17 92.0 54 72.2
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 1.6e-17 92.0 54 75.9
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.6e-17 92.0 53 75.5
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.7e-17 91.3 54 75.9
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 2.7e-17 91.3 54 72.2
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 2.7e-17 91.3 55 72.7
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 4.6e-17 90.5 54 75.9
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 4.6e-17 90.5 57 66.7
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 6.1e-17 90.1 57 66.7
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 7.9e-17 89.7 59 66.1
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 1.0e-16 89.4 55 69.1
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.0e-16 89.4 59 67.8
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.0e-16 89.4 57 66.7
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.0e-16 89.4 59 66.1
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 1.4e-16 89.0 54 72.2
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.8e-16 88.6 54 70.4
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 2.3e-16 88.2 55 67.3
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 3.0e-16 87.8 54 66.7
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 5.1e-16 87.0 59 62.7
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 8.8e-16 86.3 59 64.4
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 8.8e-16 86.3 57 63.2
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.5e-15 85.5 54 66.7
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 5.7e-15 83.6 57 64.9
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 5.7e-15 83.6 52 67.3
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 7.4e-15 83.2 59 61.0
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 1.3e-14 82.4 53 66.0
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 1.1e-13 79.3 53 71.7
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.4e-13 79.0 52 71.2
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 3.1e-13 77.8 51 70.6
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 3.1e-13 77.8 47 70.2
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 6.9e-13 76.6 51 68.6
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 2.2e-11 71.6 44 70.5
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 8.5e-11 69.7 55 60.0
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.1e-10 69.3 56 53.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 1.1e-10 69.3 57 49.1
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.2e-09 65.9 55 52.7
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 5.1e-08 60.5 56 44.6
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 1.5e-07 58.9 56 39.3
CiPaw.09G101200 Carya illinoinensis HOM05D005610 ORTHO05D006181 4.8e-06 53.9 45 57.8


User provided reference genes

Program Settings