Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7327 Trifolium pratense HOM05D007753 ORTHO05D009385 1.8e-121 439.1 198 100.0
TPR.G38673 Trifolium pratense HOM05D007753 ORTHO05D009385 1.9e-115 419.1 197 97.0
Medtr4g011090 Medicago truncatula HOM05D007753 ORTHO05D009385 1.4e-105 386.3 198 87.9
Ca_20429_v3 Cicer arietinum L. HOM05D007753 ORTHO05D009385 2.5e-99 365.5 201 83.6
Psat7g000960 Pisum sativum HOM05D007753 ORTHO05D009385 1.8e-97 359.4 198 84.8
Glyma.08G210700 Glycine max HOM05D007753 ORTHO05D009385 3.3e-83 312.0 200 71.5
Glyma.07G032000 Glycine max HOM05D007753 ORTHO05D009385 9.9e-80 300.4 199 69.8
Lj3g0017927 Lotus japonicus HOM05D007753 ORTHO05D009385 1.1e-78 297.0 197 70.6
VMungo0331G0527 Vigna mungo HOM05D007753 ORTHO05D009385 4.6e-77 291.6 196 68.9
arahy.Tifrunner.gnm1.ann1.M43JJC Arachis hypogaea HOM05D007753 ORTHO05D009385 7.6e-72 274.2 196 65.8
arahy.Tifrunner.gnm1.ann1.PVCU19 Arachis hypogaea HOM05D007753 ORTHO05D009385 2.9e-71 272.3 196 65.3
Phvul.010G154000 Phaseolus vulgaris HOM05D007753 ORTHO05D009385 7.1e-70 267.7 192 63.0
Lalb_Chr04g0262461 Lupinus albus HOM05D007753 ORTHO05D009385 9.6e-67 257.3 192 62.5
CiPaw.01G244900 Carya illinoinensis HOM05D007753 ORTHO05D009385 1.4e-62 243.4 198 59.1
TWI75G0540 Tripterygium wilfordii HOM05D007753 ORTHO05D009385 1.9e-62 243.0 191 58.6
Haze_16518 Corylus avellana HOM05D007753 ORTHO05D009385 9.3e-62 240.7 199 58.8
Manes.11G053400 Manihot esculenta HOM05D007753 ORTHO05D009385 2.1e-61 239.6 199 54.3
QL05p027928 Quercus lobata HOM05D007753 ORTHO05D009385 2.7e-61 239.2 197 58.9
QL05p063911 Quercus lobata HOM05D007753 ORTHO05D009385 3.5e-61 238.8 197 58.9
Cc04_g04070 Coffea canephora HOM05D007753 ORTHO05D009385 7.9e-61 237.7 197 53.3
Potri.003G062000 Populus trichocarpa HOM05D007753 ORTHO05D009385 7.9e-61 237.7 198 57.1
vmacro18967 Vaccinium macrocarpon HOM05D007753 ORTHO05D009385 1.1e-59 233.8 195 55.4
Lj5C69T4 Lonicera japonica HOM05D007753 ORTHO05D009385 3.3e-59 232.3 195 53.3
COL.COLO4_12908 Corchorus olitorius HOM05D007753 ORTHO05D009385 5.7e-59 231.5 198 53.0
Cfa002006 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.1e-58 229.6 199 56.3
Hma1.2p1_0515F.1_g170220 Hydrangea macrophylla HOM05D007753 ORTHO05D009385 3.7e-58 228.8 194 53.6
Nitab4.5_0006574g0050 Nicotiana tabacum HOM05D007753 ORTHO05D009385 3.7e-58 228.8 199 54.3
Nitab4.5_0002257g0030 Nicotiana tabacum HOM05D007753 ORTHO05D009385 8.2e-58 227.6 199 52.8
RcHm_v2.0_Chr2g0136491 Rosa chinensis HOM05D007753 ORTHO05D009385 8.2e-58 227.6 199 52.8
Gohir.A05G125300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 3.1e-57 225.7 192 53.1
Rhsim08G0215900 Rhododendron simsii HOM05D007753 ORTHO05D009385 4.5e-56 221.9 195 54.4
Sed0009628 Sechium edule HOM05D007753 ORTHO05D009385 4.5e-56 221.9 203 51.2
Nn2g11967 Nelumbo nucifera HOM05D007753 ORTHO05D009385 5.9e-56 221.5 197 52.3
Solyc03g116480.1 Solanum lycopersicum HOM05D007753 ORTHO05D009385 1.0e-55 220.7 200 51.5
Thecc.06G071000 Theobroma cacao HOM05D007753 ORTHO05D009385 1.3e-55 220.3 185 54.6
FvH4_6g30250 Fragaria vesca HOM05D007753 ORTHO05D009385 2.9e-55 219.2 197 51.3
TAR626G0264 Trochodendron aralioides HOM05D007753 ORTHO05D009385 2.9e-55 219.2 197 52.3
CAN.G407.105 Capsicum annuum HOM05D007753 ORTHO05D009385 5.0e-55 218.4 203 54.2
Migut.I00798 Erythranthe guttata HOM05D007753 ORTHO05D009385 5.0e-55 218.4 198 51.5
FAN02G0819 Fragaria x ananassa HOM05D007753 ORTHO05D009385 5.0e-55 218.4 197 51.3
Peaxi162Scf00274g00826 Petunia axillaris HOM05D007753 ORTHO05D009385 5.0e-55 218.4 199 51.3
Sopen03g035370 Solanum pennellii HOM05D007753 ORTHO05D009385 6.5e-55 218.0 200 51.0
FAN14G1500 Fragaria x ananassa HOM05D007753 ORTHO05D009385 8.4e-55 217.6 197 51.3
Atru.chr1.3069 Acer truncatum HOM05D007753 ORTHO05D009385 1.4e-54 216.9 209 52.2
FAN05G5641 Fragaria x ananassa HOM05D007753 ORTHO05D009385 1.4e-54 216.9 197 51.8
Prupe.3G081200 Prunus persica HOM05D007753 ORTHO05D009385 1.4e-54 216.9 199 52.3
TAR626G0406 Trochodendron aralioides HOM05D007753 ORTHO05D009385 2.5e-54 216.1 197 51.3
PGR102G0169 Punica granatum HOM05D007753 ORTHO05D009385 5.5e-54 214.9 196 48.5
Sabra03G0036100 Salix brachista HOM05D007753 ORTHO05D009385 5.5e-54 214.9 194 52.1
PGSC0003DMG400000606 Solanum tuberosum HOM05D007753 ORTHO05D009385 5.5e-54 214.9 203 49.3
Gohir.D05G126300 Gossypium hirsutum HOM05D007753 ORTHO05D009385 7.2e-54 214.5 192 52.1
Gorai.009G130300 Gossypium raimondii HOM05D007753 ORTHO05D009385 7.2e-54 214.5 192 52.1
MD17G1206200 Malus domestica HOM05D007753 ORTHO05D009385 1.2e-53 213.8 201 50.2
MELO3C017898.2 Cucumis melo HOM05D007753 ORTHO05D009385 4.6e-53 211.8 202 52.5
SGA_v2.0_scaffold5G02663 Striga asiatica HOM05D007753 ORTHO05D009385 1.8e-52 209.9 192 49.5
CsaV3_4G001420 Cucumis sativus L. HOM05D007753 ORTHO05D009385 1.1e-51 207.2 194 52.1
MSTRG.11118 Avicennia marina HOM05D007753 ORTHO05D009385 5.7e-51 204.9 198 49.0
Nn8g39391 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.3e-50 203.8 195 49.2
Sed0004194 Sechium edule HOM05D007753 ORTHO05D009385 3.7e-50 202.2 202 50.0
Cpa.g.sc10.226 Carica papaya HOM05D007753 ORTHO05D009385 6.3e-50 201.4 205 46.3
HanXRQChr09g0274921 Helianthus annuus HOM05D007753 ORTHO05D009385 8.2e-50 201.1 199 48.2
ClCG00G004440 Citrullus lanatus HOM05D007753 ORTHO05D009385 5.3e-49 198.4 194 50.0
ClCG07G012780 Citrullus lanatus HOM05D007753 ORTHO05D009385 5.3e-49 198.4 194 50.0
CANSAT56G2472 Cannabis sativa HOM05D007753 ORTHO05D009385 2.0e-48 196.4 201 46.8
Dinv30574 Davidia involucrata HOM05D007753 ORTHO05D009385 3.4e-48 195.7 200 49.5
Aqoxy7G02101 Aquilegia oxysepala HOM05D007753 ORTHO05D009385 1.7e-47 193.4 198 46.5
ECA232G3915 Erigeron canadensis HOM05D007753 ORTHO05D009385 3.8e-47 192.2 195 46.2
Lsat_1_v5_gn_4_105861 Lactuca sativa HOM05D007753 ORTHO05D009385 9.4e-46 187.6 186 48.4
HanXRQChr16g0500541 Helianthus annuus HOM05D007753 ORTHO05D009385 2.7e-45 186.0 196 43.4
DCAR_025487 Daucus carota HOM05D007753 ORTHO05D009385 3.7e-42 175.6 195 45.1
Nn1g04494 Nelumbo nucifera HOM05D007753 ORTHO05D009385 1.4e-41 173.7 195 44.6
Rhsim03G0103900 Rhododendron simsii HOM05D007753 ORTHO05D009385 6.9e-41 171.4 163 50.9
Rhsim03G0101500 Rhododendron simsii HOM05D007753 ORTHO05D009385 8.5e-39 164.5 157 50.3
Ciclev10027449m.g Citrus clementina HOM05D007753 ORTHO05D009385 1.1e-38 164.1 119 62.2
Oeu015237.1 Olea europaea HOM05D007753 ORTHO05D009385 1.6e-32 143.7 192 39.6
Eucgr.F02545 Eucalyptus grandis HOM05D007753 ORTHO05D009385 1.7e-31 140.2 102 61.8
CSS0017457 Camellia sinensis var. sinensis HOM05D007753 ORTHO05D009385 5.5e-30 135.2 190 38.9
SEGI_20973 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 1.5e-22 110.5 202 31.2
SEGI_19660 Sequoiadendron giganteum HOM05D007753 ORTHO05D009385 2.3e-20 103.2 189 31.7
Pp3c22_13680 Physcomitrium patens HOM05D007753 ORTHO05D009385 4.8e-18 95.5 201 29.9
SMO276G0031 Selaginella moellendorffii HOM05D007753 ORTHO05D009385 4.1e-17 92.4 195 28.2
Pp3c19_15800 Physcomitrium patens HOM05D007753 ORTHO05D009385 5.5e-14 82.0 202 27.2
SalBow8G5618 Salvia bowleyana HOM05D005977 ORTHO05D007546 1.1e-06 57.8 148 27.0
Lsat_1_v5_gn_8_147861 Lactuca sativa HOM05D002809 ORTHO05D004563 5.6e-06 55.5 120 31.7
Actinidia01765 Actinidia chinensis HOM05D007753 ORTHO05D009385 9.5e-06 54.7 46 54.3


User provided reference genes

Program Settings