Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 6.0e-103 377.5 186 100.0
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 1.6e-84 316.2 189 84.7
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 5.1e-70 268.1 187 74.9
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.4e-67 259.2 190 70.0
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 1.7e-65 253.1 190 69.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 3.6e-63 245.4 193 67.9
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 4.5e-58 228.4 190 63.7
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 1.1e-56 223.8 193 65.3
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 7.9e-55 217.6 190 60.0
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.6e-45 186.0 194 54.1
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 1.1e-43 180.6 190 53.2
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 5.3e-43 178.3 192 51.6
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 5.3e-43 178.3 197 52.8
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 1.6e-42 176.8 181 52.5
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 4.5e-42 175.3 191 51.8
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 4.5e-42 175.3 189 51.9
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 2.2e-41 172.9 199 50.8
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 2.9e-41 172.6 192 52.1
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 5.5e-40 168.3 188 49.5
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 7.2e-40 167.9 194 52.1
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.2e-39 167.2 190 51.6
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.7e-39 165.2 188 50.0
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.7e-39 165.2 190 51.6
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.0e-38 164.1 185 48.6
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 3.0e-38 162.5 188 49.5
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.0e-38 162.5 194 50.5
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 4.0e-38 162.2 187 49.7
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 5.2e-38 161.8 173 52.0
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.2e-38 161.8 188 48.4
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 8.8e-38 161.0 183 49.7
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 1.2e-37 160.6 173 52.0
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 7.5e-37 157.9 178 51.1
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 7.5e-37 157.9 186 48.9
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 9.7e-37 157.5 188 47.3
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.7e-36 156.8 190 47.9
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.7e-36 156.8 189 48.1
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 4.8e-36 155.2 190 47.9
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 4.8e-36 155.2 174 46.0
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.8e-35 153.3 194 47.9
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 2.4e-35 152.9 180 45.6
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 3.1e-35 152.5 193 46.6
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 3.1e-35 152.5 189 47.1
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 3.1e-35 152.5 194 46.9
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 4.1e-35 152.1 179 52.0
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 9.1e-35 151.0 185 47.0
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 9.1e-35 151.0 184 45.7
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 9.1e-35 151.0 184 49.5
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 1.2e-34 150.6 185 50.3
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 1.2e-34 150.6 185 50.3
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 1.6e-34 150.2 194 48.5
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-34 150.2 182 51.1
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 2.7e-34 149.4 181 48.6
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 2.7e-34 149.4 186 49.5
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.5e-34 148.7 182 48.4
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 5.9e-34 148.3 171 46.2
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.9e-34 148.3 183 45.9
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.0e-33 147.5 179 50.8
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.0e-33 147.5 199 47.7
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 1.0e-33 147.5 206 44.7
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 1.3e-33 147.1 197 46.7
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.3e-33 147.1 197 46.7
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.3e-33 147.1 197 46.7
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 1.3e-33 147.1 175 45.7
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.7e-33 146.7 197 45.2
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 2.2e-33 146.4 174 44.3
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.2e-33 146.4 188 44.7
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 2.2e-33 146.4 186 45.7
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.5e-33 144.8 196 45.4
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 1.5e-32 143.7 172 54.1
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.9e-32 143.3 195 47.2
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.9e-32 143.3 190 44.7
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 1.9e-32 143.3 182 48.4
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 3.2e-32 142.5 190 44.7
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 5.5e-32 141.7 189 46.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 5.5e-32 141.7 175 48.6
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 7.2e-32 141.4 182 47.3
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.6e-31 140.2 181 46.4
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 1.6e-31 140.2 179 47.5
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 1.6e-31 140.2 179 47.5
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 1.6e-31 140.2 194 45.9
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 1.6e-31 140.2 192 43.2
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 2.1e-31 139.8 184 44.6
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 2.1e-31 139.8 198 44.9
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.7e-31 139.4 178 44.4
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 2.7e-31 139.4 174 46.6
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 2.7e-31 139.4 182 45.1
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 6.1e-31 138.3 175 49.7
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 6.1e-31 138.3 194 44.3
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 6.1e-31 138.3 192 44.8
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 1.0e-30 137.5 181 45.9
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 1.0e-30 137.5 181 45.9
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.4e-30 137.1 174 48.9
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.4e-30 137.1 180 46.1
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.4e-30 137.1 188 46.3
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 1.4e-30 137.1 175 49.7
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 1.8e-30 136.7 184 49.5
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 1.8e-30 136.7 184 48.4
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.0e-30 136.0 186 43.5
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 4.0e-30 135.6 178 46.6
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 6.8e-30 134.8 201 44.3
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 1.2e-29 134.0 184 42.9
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 2.6e-29 132.9 179 44.7
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 9.8e-29 131.0 188 41.5
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.3e-28 130.6 173 42.2
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 2.8e-28 129.4 203 42.4
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.3e-28 128.3 175 45.7
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.4e-27 127.1 176 44.9
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.4e-27 127.1 188 42.6
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-27 126.3 176 44.9
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 2.4e-27 126.3 176 44.9
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 2.4e-27 126.3 176 44.9
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.4e-27 126.3 176 44.9
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 5.4e-27 125.2 176 44.9
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 1.2e-26 124.0 184 44.0
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 1.6e-26 123.6 180 45.6
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.6e-26 123.6 176 43.2
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.6e-26 123.6 171 43.9
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 2.0e-26 123.2 178 44.9
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-26 122.5 161 45.3
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 4.5e-26 122.1 181 43.6
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.9e-26 121.7 177 45.2
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.7e-26 121.3 198 41.9
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.3e-25 120.6 167 45.5
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 1.3e-25 120.6 210 42.4
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.3e-25 120.6 148 48.0
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 2.3e-25 119.8 185 43.8
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 2.3e-25 119.8 176 43.8
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 3.8e-25 119.0 185 43.8
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 8.6e-25 117.9 179 40.8
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 8.6e-25 117.9 178 43.3
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 1.9e-24 116.7 182 45.6
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 1.9e-24 116.7 222 40.1
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.9e-24 116.7 173 41.6
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 4.2e-24 115.5 179 41.3
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 9.5e-24 114.4 186 45.2
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 3.6e-23 112.5 177 40.7
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 8.0e-23 111.3 184 38.6
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.8e-22 110.2 167 43.1
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 1.8e-22 110.2 177 39.5
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-22 107.8 175 38.9
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 2.6e-21 106.3 177 40.1
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 3.4e-21 105.9 203 37.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 7.5e-21 104.8 141 44.0
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 1.3e-20 104.0 187 42.8
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 2.4e-19 99.8 173 40.5
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 4.1e-19 99.0 113 46.0
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 4.1e-19 99.0 166 42.8
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.2e-18 97.4 182 36.8
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-18 97.1 175 39.4
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.7e-17 93.6 166 41.0
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 5.0e-17 92.0 169 40.2
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 1.1e-16 90.9 128 46.1
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.5e-16 90.5 168 37.5
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 3.6e-15 85.9 171 39.2
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 8.0e-15 84.7 152 40.8
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 1.4e-14 84.0 189 30.7
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 1.8e-14 83.6 210 33.3
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 6.8e-14 81.6 200 37.5
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-14 81.3 103 44.7
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 5.8e-13 78.6 153 35.3
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-11 74.3 120 40.8
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 7.0e-11 71.6 105 42.9
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 7.0e-11 71.6 149 41.6
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 1.2e-10 70.9 81 49.4
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-10 70.5 91 46.2
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 3.5e-10 69.3 212 33.5
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 1.7e-09 67.0 124 36.3
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.3e-09 66.6 119 38.7
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.9e-08 63.5 201 28.4
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 2.5e-08 63.2 170 31.2
HPP92_011875 Vanilla planifolia HOM05D003790 ORTHO05D004481 4.7e-07 58.9 173 28.9
MBI07_g42010_MAGBIO Magnolia biondii HOM05D001131 ORTHO05D000972 6.2e-07 58.5 193 27.5
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.0e-07 58.2 71 47.9
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.1e-06 57.8 138 33.3
GSVIVG01032948001 Vitis vinifera HOM05D001131 ORTHO05D000972 1.1e-06 57.8 197 28.9
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.0e-06 55.8 208 27.4


User provided reference genes

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