Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 1.8e-40 168.7 77 100.0
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 2.2e-27 125.2 58 98.3
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 2.3e-24 115.2 56 92.9
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 3.3e-23 111.3 56 89.3
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 1.6e-22 109.0 58 86.2
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.1e-21 106.3 57 84.2
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 1.8e-21 105.5 58 82.8
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 3.4e-20 101.3 58 81.0
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 3.4e-20 101.3 58 82.8
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 5.0e-19 97.4 59 74.6
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 6.5e-19 97.1 58 77.6
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 2.5e-18 95.1 58 75.9
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 2.5e-18 95.1 59 71.2
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 3.2e-18 94.7 59 67.8
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 9.3e-18 93.2 62 71.0
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 1.6e-17 92.4 56 69.6
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.6e-17 90.9 62 69.4
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 6.1e-17 90.5 55 72.7
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 6.1e-17 90.5 56 67.9
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 7.9e-17 90.1 56 69.6
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.0e-16 89.7 56 69.6
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 1.0e-16 89.7 58 65.5
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 1.3e-16 89.4 58 69.0
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.3e-16 89.4 57 68.4
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.8e-16 89.0 58 67.2
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.8e-16 89.0 55 70.9
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.8e-16 89.0 56 67.9
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 3.9e-16 87.8 59 61.0
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 3.9e-16 87.8 58 63.8
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 3.9e-16 87.8 56 67.9
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.9e-16 87.8 58 65.5
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 3.9e-16 87.8 58 65.5
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 5.1e-16 87.4 55 65.5
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 5.1e-16 87.4 56 66.1
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 6.7e-16 87.0 56 64.3
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 6.7e-16 87.0 56 67.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 6.7e-16 87.0 56 67.9
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 6.7e-16 87.0 82 47.6
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 8.7e-16 86.7 58 62.1
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 1.1e-15 86.3 56 66.1
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.5e-15 85.9 58 65.5
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 1.9e-15 85.5 57 59.6
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 1.9e-15 85.5 58 65.5
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 3.3e-15 84.7 58 63.8
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.3e-15 84.7 60 63.3
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 4.3e-15 84.3 55 67.3
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 4.3e-15 84.3 54 70.4
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 5.7e-15 84.0 55 63.6
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 7.4e-15 83.6 58 62.1
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 9.7e-15 83.2 56 69.6
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 9.7e-15 83.2 56 66.1
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 1.3e-14 82.8 55 65.5
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 1.3e-14 82.8 56 62.5
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 1.6e-14 82.4 61 60.7
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.6e-14 82.4 56 66.1
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 2.2e-14 82.0 58 62.1
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 2.2e-14 82.0 55 65.5
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 3.7e-14 81.3 56 60.7
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 3.7e-14 81.3 56 62.5
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 3.7e-14 81.3 56 62.5
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 6.3e-14 80.5 59 59.3
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 6.3e-14 80.5 56 62.5
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 1.1e-13 79.7 56 60.7
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 1.8e-13 79.0 55 60.0
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 4.1e-13 77.8 57 63.2
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 4.1e-13 77.8 63 55.6
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.1e-13 77.8 56 62.5
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 4.1e-13 77.8 55 60.0
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 5.3e-13 77.4 79 50.6
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 5.3e-13 77.4 56 57.1
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 5.3e-13 77.4 55 60.0
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 9.1e-13 76.6 56 64.3
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 9.1e-13 76.6 59 61.0
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 9.1e-13 76.6 56 58.9
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.2e-12 76.3 52 61.5
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.2e-12 76.3 55 61.8
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 1.5e-12 75.9 56 58.9
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 2.0e-12 75.5 56 58.9
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 2.6e-12 75.1 59 61.0
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 4.5e-12 74.3 56 55.4
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.5e-12 74.3 56 60.7
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 5.9e-12 73.9 58 58.6
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 5.9e-12 73.9 56 55.4
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 5.9e-12 73.9 56 60.7
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 7.7e-12 73.6 56 58.9
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 7.7e-12 73.6 56 55.4
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 1.0e-11 73.2 56 57.1
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 1.0e-11 73.2 56 57.1
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 1.0e-11 73.2 56 57.1
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.0e-11 73.2 56 57.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 2.2e-11 72.0 55 56.4
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 2.9e-11 71.6 56 55.4
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 1.1e-10 69.7 56 53.6
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.1e-10 69.7 55 56.4
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 1.1e-10 69.7 55 58.2
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.4e-10 69.3 61 54.1
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.5e-10 68.6 61 54.1
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 7.2e-10 67.0 59 50.8
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 9.4e-10 66.6 56 51.8
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 3.6e-09 64.7 54 59.3
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 6.1e-09 63.9 54 53.7
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 7.9e-09 63.5 50 60.0
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 7.9e-09 63.5 56 53.6
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 2.3e-08 62.0 63 47.6
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 5.1e-08 60.8 58 48.3
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 2.0e-07 58.9 58 44.8
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 2.0e-07 58.9 59 47.5
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 2.6e-07 58.5 54 51.9
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 2.8e-06 55.1 92 34.8
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 4.8e-06 54.3 58 43.1
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 6.3e-06 53.9 58 48.3


User provided reference genes

Program Settings