Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 4.1e-133 478.0 235 100.0
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 1.7e-110 402.9 236 86.4
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 5.2e-104 381.3 241 80.1
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 1.3e-102 376.7 235 81.3
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 1.8e-72 276.6 243 62.1
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 5.9e-71 271.6 243 60.9
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 6.7e-67 258.1 245 57.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-65 253.8 271 53.5
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 1.3e-65 253.8 271 53.5
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 6.3e-65 251.5 245 56.7
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 1.9e-61 240.0 267 51.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 7.9e-60 234.6 264 50.0
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 3.9e-59 232.3 113 97.3
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 6.9e-56 221.5 268 48.9
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 1.5e-55 220.3 273 48.7
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 2.6e-55 219.5 268 48.5
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 4.5e-55 218.8 260 51.2
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 7.7e-55 218.0 272 47.4
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 3.8e-54 215.7 268 49.3
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 6.5e-54 214.9 277 48.4
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 4.2e-53 212.2 270 47.0
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 4.2e-53 212.2 275 47.3
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 5.5e-53 211.8 277 47.7
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 7.2e-53 211.5 272 47.4
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 1.2e-52 210.7 271 46.5
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 1.2e-52 210.7 280 47.5
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.6e-52 210.3 245 50.6
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.7e-52 209.5 270 46.7
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 2.7e-52 209.5 245 50.6
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 4.7e-52 208.8 266 45.5
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 1.4e-51 207.2 287 44.3
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 3.9e-51 205.7 278 44.6
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 5.1e-51 205.3 252 48.8
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 5.1e-51 205.3 286 44.4
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.5e-50 203.8 278 45.3
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 2.6e-50 203.0 257 47.5
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 4.4e-50 202.2 264 43.6
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 4.4e-50 202.2 273 44.7
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.4e-50 202.2 276 44.9
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 4.4e-50 202.2 276 44.6
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 4.4e-50 202.2 260 43.8
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 5.7e-50 201.8 262 44.7
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 7.4e-50 201.4 290 43.1
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 7.4e-50 201.4 250 47.6
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 7.4e-50 201.4 276 44.6
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 9.7e-50 201.1 253 47.8
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.3e-49 200.7 273 45.4
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 2.2e-49 199.9 285 44.6
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 4.8e-49 198.7 275 43.6
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 1.1e-48 197.6 237 48.9
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 1.1e-48 197.6 273 45.4
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.4e-48 197.2 274 44.2
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 3.1e-48 196.1 279 42.3
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 5.3e-48 195.3 236 46.6
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 9.1e-48 194.5 265 43.4
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 1.6e-47 193.7 226 49.1
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.0e-47 193.4 287 43.9
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 3.5e-47 192.6 236 47.0
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.3e-46 190.7 251 45.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 1.3e-46 190.7 264 42.8
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 2.2e-46 189.9 295 40.3
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 2.2e-46 189.9 262 43.5
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 2.9e-46 189.5 239 43.1
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 2.9e-46 189.5 262 44.3
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 2.9e-46 189.5 274 41.2
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 5.0e-46 188.7 284 43.7
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 8.5e-46 188.0 289 41.2
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 1.1e-45 187.6 289 40.5
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 1.5e-45 187.2 288 41.7
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.5e-45 187.2 281 42.7
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 7.2e-45 184.9 243 42.8
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 7.2e-45 184.9 280 42.5
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 9.4e-45 184.5 289 40.5
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 1.2e-44 184.1 265 44.5
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.1e-44 183.3 270 44.1
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 3.6e-44 182.6 283 42.0
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 4.7e-44 182.2 268 43.7
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 4.7e-44 182.2 268 43.7
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 1.0e-43 181.0 235 45.1
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 1.8e-43 180.3 282 38.7
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 5.2e-43 178.7 285 39.3
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 5.2e-43 178.7 282 39.0
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 1.1e-42 177.6 284 38.0
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 2.6e-42 176.4 286 38.5
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 2.6e-42 176.4 282 41.8
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 9.7e-42 174.5 280 38.9
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 2.2e-41 173.3 282 37.9
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 8.2e-41 171.4 298 39.9
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 7.0e-40 168.3 288 37.8
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 2.2e-38 163.3 277 37.2
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 2.2e-38 163.3 277 37.2
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 5.0e-38 162.2 277 36.1
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 6.5e-38 161.8 235 40.0
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.5e-37 160.6 224 42.0
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 4.0e-35 152.5 281 35.2
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 5.2e-35 152.1 281 34.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 8.8e-35 151.4 261 38.3
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 3.4e-34 149.4 254 36.6
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 7.5e-34 148.3 264 39.8
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.1e-32 142.9 239 42.7
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 6.5e-30 135.2 115 61.7
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 4.2e-29 132.5 145 49.0
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.2e-28 131.0 236 39.4
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 1.6e-28 130.6 120 57.5
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 1.2e-26 124.4 294 31.6
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 4.4e-26 122.5 215 40.9
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 7.5e-26 121.7 146 48.6
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 6.3e-25 118.6 99 61.6
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.2e-23 114.4 81 66.7
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 2.9e-22 109.8 306 31.0
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 7.3e-21 105.1 171 41.5
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.1e-20 103.6 94 57.4
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 5.2e-19 99.0 114 49.1
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 1.3e-17 94.4 179 38.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 1.4e-16 90.9 88 56.8
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 3.2e-16 89.7 114 44.7
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 2.3e-14 83.6 130 36.2
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 8.6e-14 81.6 105 41.9
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 2.7e-07 60.1 76 50.0
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 1.0e-06 58.2 78 41.0
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 3.0e-06 56.6 79 43.0


User provided reference genes

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