Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7247 Trifolium pratense HOM05D002538 ORTHO05D003162 3.8e-73 278.1 142 100.0
TPR.G40284 Trifolium pratense HOM05D002538 ORTHO05D003162 1.1e-53 213.4 135 83.7
TPR.G14940 Trifolium pratense HOM05D002538 ORTHO05D003162 8.0e-31 137.5 161 56.5
Medtr4g088220 Medicago truncatula HOM05D002538 ORTHO05D003162 2.0e-29 132.9 151 55.0
Ca_18600_v3 Cicer arietinum L. HOM05D002538 ORTHO05D003162 2.6e-29 132.5 151 55.0
Lj4g0011488 Lotus japonicus HOM05D002538 ORTHO05D003162 2.2e-28 129.4 151 54.3
MELO3C007254.2 Cucumis melo HOM05D002538 ORTHO05D003162 4.1e-27 125.2 154 50.6
arahy.Tifrunner.gnm1.ann1.BNQL10 Arachis hypogaea HOM05D002538 ORTHO05D003162 7.0e-27 124.4 154 51.9
Lalb_Chr16g0384091 Lupinus albus HOM05D002538 ORTHO05D003162 7.0e-27 124.4 151 53.0
Lalb_Chr09g0327861 Lupinus albus HOM05D002538 ORTHO05D003162 1.2e-26 123.6 151 51.7
THA.LOC104798407 Tarenaya hassleriana HOM05D002538 ORTHO05D003162 4.5e-26 121.7 151 51.7
Gohir.D06G135500 Gossypium hirsutum HOM05D002538 ORTHO05D003162 5.9e-26 121.3 151 49.7
Manes.16G032600 Manihot esculenta HOM05D002538 ORTHO05D003162 5.9e-26 121.3 153 50.3
Phvul.003G290500 Phaseolus vulgaris HOM05D002538 ORTHO05D003162 5.9e-26 121.3 151 53.0
Atru.chr10.1782 Acer truncatum HOM05D002538 ORTHO05D003162 1.0e-25 120.6 151 51.0
Eucgr.D00590 Eucalyptus grandis HOM05D002538 ORTHO05D003162 1.0e-25 120.6 151 50.3
ClCG00G002770 Citrullus lanatus HOM05D002538 ORTHO05D003162 1.3e-25 120.2 151 50.3
ClCG01G023320 Citrullus lanatus HOM05D002538 ORTHO05D003162 1.3e-25 120.2 151 50.3
CsaV3_6G050460 Cucumis sativus L. HOM05D002538 ORTHO05D003162 1.3e-25 120.2 151 50.3
Gorai.010G157500 Gossypium raimondii HOM05D002538 ORTHO05D003162 2.2e-25 119.4 151 49.0
Sabra11G0040600 Salix brachista HOM05D002538 ORTHO05D003162 2.2e-25 119.4 151 49.0
Gohir.A06G127200 Gossypium hirsutum HOM05D002538 ORTHO05D003162 2.9e-25 119.0 151 49.0
Gohir.D10G028700 Gossypium hirsutum HOM05D002538 ORTHO05D003162 3.8e-25 118.6 151 50.3
Ciclev10014139m.g Citrus clementina HOM05D002538 ORTHO05D003162 5.0e-25 118.2 151 50.3
Atru.chr10.1781 Acer truncatum HOM05D002538 ORTHO05D003162 6.5e-25 117.9 154 48.7
Eucgr.C03068 Eucalyptus grandis HOM05D002538 ORTHO05D003162 6.5e-25 117.9 151 49.7
Nn1g06401 Nelumbo nucifera HOM05D002538 ORTHO05D003162 6.5e-25 117.9 151 50.3
Gorai.011G030500 Gossypium raimondii HOM05D002538 ORTHO05D003162 8.5e-25 117.5 151 49.7
Potri.004G049400 Populus trichocarpa HOM05D002538 ORTHO05D003162 1.1e-24 117.1 151 47.7
Duzib192G0543 Durio zibethinus HOM05D002538 ORTHO05D003162 1.9e-24 116.3 151 49.7
Sed0021408 Sechium edule HOM05D002538 ORTHO05D003162 2.5e-24 115.9 151 48.3
Cpa.g.sc1080.3 Carica papaya HOM05D002538 ORTHO05D003162 9.4e-24 114.0 151 47.7
Gohir.A10G028300 Gossypium hirsutum HOM05D002538 ORTHO05D003162 9.4e-24 114.0 151 49.0
Potri.011G058500 Populus trichocarpa HOM05D002538 ORTHO05D003162 9.4e-24 114.0 151 49.0
Sabra04G0031100 Salix brachista HOM05D002538 ORTHO05D003162 9.4e-24 114.0 151 47.0
Thecc.06G180200 Theobroma cacao HOM05D002538 ORTHO05D003162 9.4e-24 114.0 151 48.3
VMungo0540G0056 Vigna mungo HOM05D002538 ORTHO05D003162 9.4e-24 114.0 153 48.4
Cfa000535 Carpinus fangiana HOM05D002538 ORTHO05D003162 1.2e-23 113.6 151 47.7
MBI06_g04404_MAGBIO Magnolia biondii HOM05D002538 ORTHO05D003162 1.2e-23 113.6 151 48.3
CANSAT35G0219 Cannabis sativa HOM05D002538 ORTHO05D003162 1.6e-23 113.2 152 48.0
ECA234G1452 Erigeron canadensis HOM05D002538 ORTHO05D003162 1.6e-23 113.2 151 48.3
CiPaw.09G064200 Carya illinoinensis HOM05D002538 ORTHO05D003162 2.1e-23 112.8 152 48.7
COL.COLO4_31408 Corchorus olitorius HOM05D002538 ORTHO05D003162 2.1e-23 112.8 151 47.7
Haze_06366 Corylus avellana HOM05D002538 ORTHO05D003162 2.1e-23 112.8 151 47.0
Sed0000642 Sechium edule HOM05D002538 ORTHO05D003162 2.7e-23 112.5 151 47.0
vmacro03901 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 2.7e-23 112.5 161 45.3
Dinv17362 Davidia involucrata HOM05D002538 ORTHO05D003162 3.6e-23 112.1 143 48.3
Nn1g04247 Nelumbo nucifera HOM05D002538 ORTHO05D003162 3.6e-23 112.1 151 47.0
Glyma.13G174200 Glycine max HOM05D002538 ORTHO05D003162 4.7e-23 111.7 151 49.0
CiPaw.10G053200 Carya illinoinensis HOM05D002538 ORTHO05D003162 8.0e-23 110.9 151 47.7
QL05p042992 Quercus lobata HOM05D002538 ORTHO05D003162 1.0e-22 110.5 151 47.0
Phvul.006G181400 Phaseolus vulgaris HOM05D002538 ORTHO05D003162 1.4e-22 110.2 151 47.0
Actinidia16575 Actinidia chinensis HOM05D002538 ORTHO05D003162 1.8e-22 109.8 151 45.0
GSVIVG01021122001 Vitis vinifera HOM05D002538 ORTHO05D003162 1.8e-22 109.8 151 45.7
Aqoxy4G00604 Aquilegia oxysepala HOM05D002538 ORTHO05D003162 3.0e-22 109.0 154 45.5
Dinv40607 Davidia involucrata HOM05D002538 ORTHO05D003162 3.0e-22 109.0 151 45.0
Glyma.07G202100 Glycine max HOM05D002538 ORTHO05D003162 3.0e-22 109.0 151 48.3
EL10Ac8g20445 Beta vulgaris HOM05D002538 ORTHO05D003162 4.0e-22 108.6 151 46.4
Hma1.2p1_0206F.1_g087630 Hydrangea macrophylla HOM05D002538 ORTHO05D003162 4.0e-22 108.6 151 47.0
Sc17g0005890 Simmondsia chinensis HOM05D002538 ORTHO05D003162 4.0e-22 108.6 151 46.4
TAR627G0078 Trochodendron aralioides HOM05D002538 ORTHO05D003162 4.0e-22 108.6 153 46.4
TAR627G0221 Trochodendron aralioides HOM05D002538 ORTHO05D003162 4.0e-22 108.6 153 46.4
Nitab4.5_0007082g0020 Nicotiana tabacum HOM05D002538 ORTHO05D003162 5.2e-22 108.2 152 46.1
SGA_v2.0_scaffold16G07643 Striga asiatica HOM05D002538 ORTHO05D003162 5.2e-22 108.2 153 45.8
MBI13_g03361_MAGBIO Magnolia biondii HOM05D002538 ORTHO05D003162 6.8e-22 107.8 151 47.7
Hund21205 Selenicereus undatus HOM05D002538 ORTHO05D003162 8.8e-22 107.5 151 47.0
Duzib160G0687 Durio zibethinus HOM05D002538 ORTHO05D003162 1.2e-21 107.1 145 46.9
Duzib235G1107 Durio zibethinus HOM05D002538 ORTHO05D003162 1.2e-21 107.1 145 46.9
HanXRQChr17g0564931 Helianthus annuus HOM05D002538 ORTHO05D003162 1.2e-21 107.1 151 46.4
TAR626G1005 Trochodendron aralioides HOM05D002538 ORTHO05D003162 1.2e-21 107.1 151 44.4
Carub.0008s0186 Capsella rubella HOM05D002538 ORTHO05D003162 1.5e-21 106.7 152 46.7
CDE09G0660 Ceratophyllum demersum HOM05D002538 ORTHO05D003162 1.5e-21 106.7 151 45.0
Cc02_g14020 Coffea canephora HOM05D002538 ORTHO05D003162 1.5e-21 106.7 152 47.4
Thhalv10000755m.g Eutrema salsugineum HOM05D002538 ORTHO05D003162 1.5e-21 106.7 151 47.7
FAN21G0308 Fragaria x ananassa HOM05D002538 ORTHO05D003162 1.5e-21 106.7 153 47.1
Oeu012159.2 Olea europaea HOM05D002538 ORTHO05D003162 1.5e-21 106.7 151 46.4
Prupe.4G053400 Prunus persica HOM05D002538 ORTHO05D003162 1.5e-21 106.7 151 47.0
Solyc02g077600.3 Solanum lycopersicum HOM05D002538 ORTHO05D003162 1.5e-21 106.7 151 44.4
CAN.G529.62 Capsicum annuum HOM05D002538 ORTHO05D003162 2.0e-21 106.3 151 45.0
Sopen02g022500 Solanum pennellii HOM05D002538 ORTHO05D003162 2.0e-21 106.3 151 44.4
CARHR175860 Cardamine hirsuta HOM05D002538 ORTHO05D003162 2.6e-21 105.9 152 46.1
FAN25G0596 Fragaria x ananassa HOM05D002538 ORTHO05D003162 2.6e-21 105.9 151 45.7
Peaxi162Scf00099g00079 Petunia axillaris HOM05D002538 ORTHO05D003162 2.6e-21 105.9 151 45.7
RcHm_v2.0_Chr5g0009341 Rosa chinensis HOM05D002538 ORTHO05D003162 2.6e-21 105.9 151 46.4
SalBow8G4204 Salvia bowleyana HOM05D002538 ORTHO05D003162 2.6e-21 105.9 154 44.2
CAN.G813.6 Capsicum annuum HOM05D002538 ORTHO05D003162 3.4e-21 105.5 151 45.0
FvH4_3g08471 Fragaria vesca HOM05D002538 ORTHO05D003162 4.4e-21 105.1 151 45.7
Solyc10g008950.3 Solanum lycopersicum HOM05D002538 ORTHO05D003162 5.7e-21 104.8 151 45.7
Sopen10g004740 Solanum pennellii HOM05D002538 ORTHO05D003162 5.7e-21 104.8 151 45.7
unitig_27.g24978 Utricularia gibba HOM05D002538 ORTHO05D003162 5.7e-21 104.8 155 45.8
ECA236G0316 Erigeron canadensis HOM05D002538 ORTHO05D003162 7.5e-21 104.4 151 44.4
HanXRQChr15g0480031 Helianthus annuus HOM05D002538 ORTHO05D003162 7.5e-21 104.4 151 45.0
Psat7g116720 Pisum sativum HOM05D002538 ORTHO05D003162 7.5e-21 104.4 156 46.2
PGR004G1187 Punica granatum HOM05D002538 ORTHO05D003162 7.5e-21 104.4 151 45.0
Rhsim02G0135500 Rhododendron simsii HOM05D002538 ORTHO05D003162 9.8e-21 104.0 151 44.4
AL8G12440 Arabidopsis lyrata HOM05D002538 ORTHO05D003162 1.3e-20 103.6 152 45.4
CDE02G1050 Ceratophyllum demersum HOM05D002538 ORTHO05D003162 1.3e-20 103.6 151 45.0
MD05G1309600 Malus domestica HOM05D002538 ORTHO05D003162 1.3e-20 103.6 151 46.4
CSS0021581 Camellia sinensis var. sinensis HOM05D002538 ORTHO05D003162 1.7e-20 103.2 153 43.8
DCAR_024895 Daucus carota HOM05D002538 ORTHO05D003162 1.7e-20 103.2 151 43.7
Lsat_1_v5_gn_4_27980 Lactuca sativa HOM05D002538 ORTHO05D003162 1.7e-20 103.2 151 46.4
Lalb_Chr15g0089661 Lupinus albus HOM05D002538 ORTHO05D003162 1.7e-20 103.2 156 46.2
Nitab4.5_0003315g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 1.7e-20 103.2 151 43.7
CSS0006869 Camellia sinensis var. sinensis HOM05D002538 ORTHO05D003162 2.2e-20 102.8 151 44.4
Lj2C293T13 Lonicera japonica HOM05D002538 ORTHO05D003162 2.2e-20 102.8 153 43.8
AT5G46070 Arabidopsis thaliana HOM05D002538 ORTHO05D003162 2.8e-20 102.4 152 45.4
MSTRG.7364 Avicennia marina HOM05D002538 ORTHO05D003162 2.8e-20 102.4 152 44.7
Peaxi162Scf00490g00311 Petunia axillaris HOM05D002538 ORTHO05D003162 2.8e-20 102.4 151 43.7
SGA_v2.0_scaffold309G48172 Striga asiatica HOM05D002538 ORTHO05D003162 3.7e-20 102.1 152 44.7
Nitab4.5_0006826g0020 Nicotiana tabacum HOM05D002538 ORTHO05D003162 4.8e-20 101.7 148 42.6
Actinidia39481 Actinidia chinensis HOM05D002538 ORTHO05D003162 6.3e-20 101.3 151 43.7
Migut.M01100 Erythranthe guttata HOM05D002538 ORTHO05D003162 6.3e-20 101.3 152 44.1
Potri.017G016800 Populus trichocarpa HOM05D002538 ORTHO05D003162 8.3e-20 100.9 150 44.0
BcaC04g21734 Brassica carinata HOM05D002538 ORTHO05D003162 1.1e-19 100.5 152 46.1
C09p28210 Brassica napus HOM05D002538 ORTHO05D003162 1.1e-19 100.5 152 46.1
BolC9t55694H Brassica oleracea HOM05D002538 ORTHO05D003162 1.1e-19 100.5 152 46.1
BraA09t37812Z Brassica rapa HOM05D002538 ORTHO05D003162 1.1e-19 100.5 152 46.1
MD10G1288200 Malus domestica HOM05D002538 ORTHO05D003162 1.1e-19 100.5 151 45.0
A09p22060 Brassica napus HOM05D002538 ORTHO05D003162 1.8e-19 99.8 152 46.1
Lj1C1200G23 Lonicera japonica HOM05D002538 ORTHO05D003162 1.8e-19 99.8 151 43.7
Hund23821 Selenicereus undatus HOM05D002538 ORTHO05D003162 1.8e-19 99.8 171 42.1
vmacro15938 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 1.8e-19 99.8 151 43.7
AUR62014880 Chenopodium quinoa HOM05D002538 ORTHO05D003162 2.4e-19 99.4 151 42.4
Sp2g10920 Schrenkiella parvula HOM05D002538 ORTHO05D003162 3.1e-19 99.0 152 45.4
ATR0602G206 Amborella trichopoda HOM05D002538 ORTHO05D003162 5.4e-19 98.2 151 41.7
BcaB07g30857 Brassica carinata HOM05D002538 ORTHO05D003162 5.4e-19 98.2 152 44.7
DCAR_028041 Daucus carota HOM05D002538 ORTHO05D003162 5.4e-19 98.2 151 43.0
PSO210G7643 Papaver somniferum HOM05D002538 ORTHO05D003162 5.4e-19 98.2 154 44.8
Aa31LG9G6820 Aethionema arabicum HOM05D002538 ORTHO05D003162 7.0e-19 97.8 156 44.2
FAN11G3059 Fragaria x ananassa HOM05D002538 ORTHO05D003162 7.0e-19 97.8 147 44.2
Lsat_1_v5_gn_7_30920 Lactuca sativa HOM05D002538 ORTHO05D003162 7.0e-19 97.8 151 42.4
PSO675G8802 Papaver somniferum HOM05D002538 ORTHO05D003162 9.1e-19 97.4 152 42.1
Hund18210 Selenicereus undatus HOM05D002538 ORTHO05D003162 9.1e-19 97.4 166 40.4
PSO541G2371 Papaver somniferum HOM05D002538 ORTHO05D003162 1.2e-18 97.1 152 41.4
PSO832G0299 Papaver somniferum HOM05D002538 ORTHO05D003162 1.2e-18 97.1 152 44.7
SalBow8G1315 Salvia bowleyana HOM05D002538 ORTHO05D003162 1.2e-18 97.1 148 42.6
TWI38G0418 Tripterygium wilfordii HOM05D002538 ORTHO05D003162 2.0e-18 96.3 151 43.7
AUR62031088 Chenopodium quinoa HOM05D002538 ORTHO05D003162 2.7e-18 95.9 145 43.4
BcaC06g31502 Brassica carinata HOM05D002538 ORTHO05D003162 7.7e-18 94.4 151 44.4
Glyma.13G234600 Glycine max HOM05D002538 ORTHO05D003162 7.7e-18 94.4 151 43.7
Sabra17G0013000 Salix brachista HOM05D002538 ORTHO05D003162 7.7e-18 94.4 150 41.3
C07p29240 Brassica napus HOM05D002538 ORTHO05D003162 1.3e-17 93.6 151 43.0
BolC7t43466H Brassica oleracea HOM05D002538 ORTHO05D003162 1.3e-17 93.6 151 43.0
PGSC0003DMG400022833 Solanum tuberosum HOM05D002538 ORTHO05D003162 1.3e-17 93.6 142 43.7
Nitab4.5_0002114g0140 Nicotiana tabacum HOM05D002538 ORTHO05D003162 1.7e-17 93.2 145 42.8
Rhsim13G0180600 Rhododendron simsii HOM05D002538 ORTHO05D003162 1.7e-17 93.2 157 41.4
HPP92_020202 Vanilla planifolia HOM05D002538 ORTHO05D003162 1.7e-17 93.2 151 43.0
Zm00001eb235320 Zea mays HOM05D002538 ORTHO05D003162 1.7e-17 93.2 152 39.5
Nitab4.5_0001955g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 2.3e-17 92.8 152 42.8
TAR624G1203 Trochodendron aralioides HOM05D002538 ORTHO05D003162 2.3e-17 92.8 154 42.2
Zm00001eb295820 Zea mays HOM05D002538 ORTHO05D003162 2.3e-17 92.8 154 40.3
A06p46220 Brassica napus HOM05D002538 ORTHO05D003162 2.9e-17 92.4 151 43.0
BraA06t27486Z Brassica rapa HOM05D002538 ORTHO05D003162 2.9e-17 92.4 151 43.0
EL10Ac7g17568 Beta vulgaris HOM05D002538 ORTHO05D003162 1.1e-16 90.5 153 39.9
Os02g0307000 Oryza sativa ssp. japonica HOM05D002538 ORTHO05D003162 1.9e-16 89.7 154 38.3
Manes.17G050000 Manihot esculenta HOM05D002538 ORTHO05D003162 4.2e-16 88.6 153 40.5
Pp3c12_11340 Physcomitrium patens HOM05D002538 ORTHO05D003162 2.1e-15 86.3 150 38.7
COL.COLO4_37677 Corchorus olitorius HOM05D002538 ORTHO05D003162 2.8e-15 85.9 150 42.0
Ah.14g089710 Amaranthus hybridus HOM05D002538 ORTHO05D003162 6.1e-15 84.7 142 40.8
arahy.Tifrunner.gnm1.ann1.T00U8Q Arachis hypogaea HOM05D002538 ORTHO05D003162 1.4e-14 83.6 131 45.8
THA.LOC104801159 Tarenaya hassleriana HOM05D002538 ORTHO05D013978 4.0e-14 82.0 149 38.9
AagrBONN_evm.TU.Sc2ySwM_117.2138 Anthoceros agrestis HOM05D002538 ORTHO05D003162 5.2e-14 81.6 156 34.0
Mapoly0197s0017 Marchantia polymorpha HOM05D002538 ORTHO05D003162 6.8e-14 81.3 151 37.1
Pp3c2_33790 Physcomitrium patens HOM05D002538 ORTHO05D003162 6.8e-14 81.3 153 33.3
Pp3c1_10700 Physcomitrium patens HOM05D002538 ORTHO05D003162 2.0e-13 79.7 153 34.0
Eucgr.L03330 Eucalyptus grandis HOM05D002538 ORTHO05D003162 4.4e-13 78.6 154 39.6
TPR.G108 Trifolium pratense HOM05D002538 ORTHO05D003162 5.7e-13 78.2 41 95.1
Ah.15g093000 Amaranthus hybridus HOM05D002538 ORTHO05D003162 1.3e-12 77.0 144 36.1
SMO137G0049 Selaginella moellendorffii HOM05D002538 ORTHO05D003162 1.7e-12 76.6 151 34.4
AUR62025528 Chenopodium quinoa HOM05D002538 ORTHO05D003162 2.2e-12 76.3 163 33.1
SEGI_39920 Sequoiadendron giganteum HOM05D002538 ORTHO05D003162 2.8e-12 75.9 158 36.1
Pp3c3_11940 Physcomitrium patens HOM05D002538 ORTHO05D003162 4.9e-12 75.1 150 34.7
Mapoly0197s0019 Marchantia polymorpha HOM05D002538 ORTHO05D003162 3.1e-11 72.4 150 35.3
SHI01516 Sapria himalayana HOM05D002538 ORTHO05D003162 2.7e-10 69.3 82 52.4
unitig_699.g19113 Utricularia gibba HOM05D002538 ORTHO05D003162 3.8e-09 65.5 83 48.2
Cpa.g.sc83.100 Carica papaya HOM05D002538 ORTHO05D003162 6.6e-09 64.7 42 71.4
MBI13_g05168_MAGBIO Magnolia biondii HOM05D002538 ORTHO05D003162 4.3e-08 62.0 75 52.0
vmacro22963 Vaccinium macrocarpon HOM05D002538 ORTHO05D003162 2.8e-07 59.3 56 57.1
MBI07_g01328_MAGBIO Magnolia biondii HOM05D000010 ORTHO05D003162 2.3e-06 56.2 43 60.5
SHI01520 Sapria himalayana HOM05D002538 ORTHO05D003162 6.8e-06 54.7 37 70.3
Nitab4.5_0010054g0010 Nicotiana tabacum HOM05D002538 ORTHO05D003162 8.9e-06 54.3 57 50.9


User provided reference genes

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