Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7239 Trifolium pratense HOM05D000147 ORTHO05D411095 7.6e-29 129.8 65 100.0
Medtr3g092070 Medicago truncatula HOM05D000147 ORTHO05D003093 7.4e-16 86.7 59 69.5
TPR.G33641 Trifolium pratense HOM05D000147 ORTHO05D003093 1.6e-15 85.5 59 67.8
Psat5g074360 Pisum sativum HOM05D000147 ORTHO05D003093 1.4e-14 82.4 59 66.1
Ca_16743_v3 Cicer arietinum L. HOM05D000147 ORTHO05D003093 5.9e-13 77.0 59 61.0
Lalb_Chr08g0239961 Lupinus albus HOM05D000147 ORTHO05D003093 1.0e-12 76.3 59 62.7
TPR.G33632 Trifolium pratense HOM05D000147 ORTHO05D003093 1.3e-12 75.9 59 62.7
CiPaw.06G043500 Carya illinoinensis HOM05D000147 ORTHO05D003093 2.2e-12 75.1 59 62.7
SalBow2G0961 Salvia bowleyana HOM05D000147 ORTHO05D003093 2.2e-12 75.1 59 64.4
Ca_16744_v3 Cicer arietinum L. HOM05D000147 ORTHO05D003093 2.9e-12 74.7 59 64.4
Manes.01G038000 Manihot esculenta HOM05D000147 ORTHO05D003093 2.9e-12 74.7 59 64.4
Manes.05G192700 Manihot esculenta HOM05D000147 ORTHO05D003093 2.9e-12 74.7 59 64.4
Manes.05G192781 Manihot esculenta HOM05D000147 ORTHO05D003093 2.9e-12 74.7 59 64.4
Dinv35365 Davidia involucrata HOM05D000126 ORTHO05D003093 3.8e-12 74.3 59 62.7
Oeu023675.1 Olea europaea HOM05D000147 ORTHO05D003093 3.8e-12 74.3 59 64.4
TWI23G0840 Tripterygium wilfordii HOM05D000147 ORTHO05D003093 3.8e-12 74.3 59 64.4
Atru.chr12.2326 Acer truncatum HOM05D000147 ORTHO05D003093 5.0e-12 73.9 59 62.7
FvH4_7g32510 Fragaria vesca HOM05D000147 ORTHO05D003093 5.0e-12 73.9 59 59.3
FAN01G2767 Fragaria x ananassa HOM05D000147 ORTHO05D003093 5.0e-12 73.9 59 59.3
FAN10G3142 Fragaria x ananassa HOM05D000147 ORTHO05D003093 5.0e-12 73.9 59 59.3
FAN10G3928 Fragaria x ananassa HOM05D000147 ORTHO05D003093 5.0e-12 73.9 59 59.3
Cfa016190 Carpinus fangiana HOM05D000147 ORTHO05D003093 6.5e-12 73.6 59 62.7
AUR62006042 Chenopodium quinoa HOM05D000147 ORTHO05D003093 6.5e-12 73.6 59 64.4
AUR62035586 Chenopodium quinoa HOM05D000147 ORTHO05D003093 6.5e-12 73.6 59 64.4
MELO3C019383.2 Cucumis melo HOM05D000147 ORTHO05D003093 6.5e-12 73.6 65 56.9
CsaV3_3G019640 Cucumis sativus L. HOM05D000147 ORTHO05D003093 6.5e-12 73.6 65 56.9
Glyma.04G232100 Glycine max HOM05D000147 ORTHO05D003093 6.5e-12 73.6 59 62.7
MSTRG.43 Avicennia marina HOM05D000147 ORTHO05D003093 8.4e-12 73.2 59 61.0
FAN03G2414 Fragaria x ananassa HOM05D000147 ORTHO05D003093 8.4e-12 73.2 59 57.6
Hma1.2p1_0094F.1_g047060 Hydrangea macrophylla HOM05D000147 ORTHO05D003093 8.4e-12 73.2 59 62.7
MD01G1225800 Malus domestica HOM05D000147 ORTHO05D003093 8.4e-12 73.2 59 62.7
GSVIVG01038610001 Vitis vinifera HOM05D000147 ORTHO05D003093 8.4e-12 73.2 54 66.7
Duzib205G0797 Durio zibethinus HOM05D000147 ORTHO05D003093 1.1e-11 72.8 59 62.7
Prupe.2G315900 Prunus persica HOM05D000147 ORTHO05D003093 1.1e-11 72.8 59 61.0
Sed0019453 Sechium edule HOM05D000147 ORTHO05D003093 1.1e-11 72.8 54 66.7
SEGI_01170 Sequoiadendron giganteum HOM05D000147 ORTHO05D003093 1.1e-11 72.8 54 59.3
Sc13g0010070 Simmondsia chinensis HOM05D000147 ORTHO05D003093 1.1e-11 72.8 59 62.7
CSS0047110 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D003093 1.4e-11 72.4 59 61.0
Haze_00266 Corylus avellana HOM05D000147 ORTHO05D003093 1.4e-11 72.4 59 61.0
Rhsim09G0208100 Rhododendron simsii HOM05D000147 ORTHO05D003093 1.4e-11 72.4 59 62.7
Sed0008169 Sechium edule HOM05D000147 ORTHO05D003093 1.4e-11 72.4 65 55.4
Thecc.03G205100 Theobroma cacao HOM05D000147 ORTHO05D003093 1.4e-11 72.4 59 61.0
Actinidia18674 Actinidia chinensis HOM05D000147 ORTHO05D003093 1.9e-11 72.0 54 66.7
CANSAT21G0762 Cannabis sativa HOM05D000147 ORTHO05D003093 1.9e-11 72.0 59 61.0
COL.COLO4_16828 Corchorus olitorius HOM05D000147 ORTHO05D003093 1.9e-11 72.0 65 56.9
Glyma.06G132800 Glycine max HOM05D000147 ORTHO05D003093 1.9e-11 72.0 59 61.0
Lsat_1_v5_gn_9_49501 Lactuca sativa HOM05D000147 ORTHO05D003093 1.9e-11 72.0 59 61.0
MBI04_g33408_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D003093 1.9e-11 72.0 54 66.7
TWI14G0667 Tripterygium wilfordii HOM05D000147 ORTHO05D003093 1.9e-11 72.0 59 62.7
vmacro10146 Vaccinium macrocarpon HOM05D000147 ORTHO05D003093 1.9e-11 72.0 59 62.7
HPP92_025412 Vanilla planifolia HOM05D000147 ORTHO05D003093 1.9e-11 72.0 54 66.7
Aa31sc1529G10 Aethionema arabicum HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 59.3
A03p57470 Brassica napus HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 59.3
CAN.G414.5 Capsicum annuum HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
CiPaw.05G201400 Carya illinoinensis HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
ClCG05G009140 Citrullus lanatus HOM05D000147 ORTHO05D003093 2.5e-11 71.6 65 55.4
Cc02_g01100 Coffea canephora HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
CsaV3_5G000370 Cucumis sativus L. HOM05D000147 ORTHO05D003093 2.5e-11 71.6 54 64.8
Glyma.14G117800 Glycine max HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 62.7
Gohir.A08G101700 Gossypium hirsutum HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 59.3
HanXRQChr15g0485561 Helianthus annuus HOM05D000147 ORTHO05D003093 2.5e-11 71.6 54 64.8
MD07G1296300 Malus domestica HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 59.3
Pp3c15_4930 Physcomitrium patens HOM05D000147 ORTHO05D003093 2.5e-11 71.6 54 66.7
Pp3c9_11120 Physcomitrium patens HOM05D000147 ORTHO05D003093 2.5e-11 71.6 54 66.7
QL09p007579 Quercus lobata HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
Hund09689 Selenicereus undatus HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
Hund21032 Selenicereus undatus HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 62.7
Solyc06g053160.3 Solanum lycopersicum HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
Sopen06g018230 Solanum pennellii HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
PGSC0003DMG400005469 Solanum tuberosum HOM05D000147 ORTHO05D003093 2.5e-11 71.6 59 61.0
Ah.13g070690 Amaranthus hybridus HOM05D000147 ORTHO05D003093 3.2e-11 71.2 59 61.0
AL7G24980 Arabidopsis lyrata HOM05D000147 ORTHO05D003093 3.2e-11 71.2 59 61.0
AT4G27680 Arabidopsis thaliana HOM05D000147 ORTHO05D003093 3.2e-11 71.2 59 61.0
Ciclev10020488m.g Citrus clementina HOM05D000147 ORTHO05D003093 3.2e-11 71.2 59 59.3
Eucgr.A01431 Eucalyptus grandis HOM05D000147 ORTHO05D003093 3.2e-11 71.2 54 64.8
Nitab4.5_0008259g0020 Nicotiana tabacum HOM05D000147 ORTHO05D003093 3.2e-11 71.2 59 62.7
THA.LOC104799952 Tarenaya hassleriana HOM05D000147 ORTHO05D003093 3.2e-11 71.2 59 59.3
Carub.0007s1314 Capsella rubella HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
CARHR235410 Cardamine hirsuta HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
ClCG01G000220 Citrullus lanatus HOM05D000126 ORTHO05D003093 4.2e-11 70.9 54 64.8
MELO3C005896.2 Cucumis melo HOM05D000147 ORTHO05D003093 4.2e-11 70.9 54 64.8
Gohir.A09G186100 Gossypium hirsutum HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
Gohir.D08G114100 Gossypium hirsutum HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
Gohir.D09G181100 Gossypium hirsutum HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
Gorai.004G122900 Gossypium raimondii HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
Gorai.006G203100 Gossypium raimondii HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
Lj1A1025T80 Lonicera japonica HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 59.3
Lalb_Chr11g0067141 Lupinus albus HOM05D000147 ORTHO05D003093 4.2e-11 70.9 54 64.8
Nitab4.5_0013963g0010 Nicotiana tabacum HOM05D000147 ORTHO05D003093 4.2e-11 70.9 59 61.0
PGR042G3363 Punica granatum HOM05D000147 ORTHO05D003093 4.2e-11 70.9 54 66.7
TAR629G1578 Trochodendron aralioides HOM05D000147 ORTHO05D003093 4.2e-11 70.9 54 64.8
Migut.F01005 Erythranthe guttata HOM05D000147 ORTHO05D003093 5.5e-11 70.5 59 59.3
Nitab4.5_0000319g0400 Nicotiana tabacum HOM05D000126 ORTHO05D003093 5.5e-11 70.5 59 62.7
Potri.015G007700 Populus trichocarpa HOM05D000147 ORTHO05D003093 5.5e-11 70.5 59 61.0
TWI39G1018 Tripterygium wilfordii HOM05D000147 ORTHO05D003093 5.5e-11 70.5 59 59.3
Lj1g0017904 Lotus japonicus HOM05D000147 ORTHO05D003093 7.2e-11 70.1 59 59.3
Phvul.009G048700 Phaseolus vulgaris HOM05D000147 ORTHO05D003093 7.2e-11 70.1 59 59.3
SGA_v2.0_scaffold125G33673 Striga asiatica HOM05D000147 ORTHO05D003093 7.2e-11 70.1 59 59.3
VMungo1309G2160 Vigna mungo HOM05D000147 ORTHO05D003093 7.2e-11 70.1 59 59.3
Ah.07g204990 Amaranthus hybridus HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 59.3
MSTRG.8534 Avicennia marina HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
EL10Ac3g05219 Beta vulgaris HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 61.0
C07p55680 Brassica napus HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
BolC7t46048H Brassica oleracea HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
BraA03t14815Z Brassica rapa HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
Migut.F00172 Erythranthe guttata HOM05D000147 ORTHO05D003093 9.3e-11 69.7 54 63.0
HanXRQChr04g0110181 Helianthus annuus HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 59.3
RcHm_v2.0_Chr1g0382351 Rosa chinensis HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
Sabra15G0005800 Salix brachista HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 59.3
Sp7g25660 Schrenkiella parvula HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
Sed0004193 Sechium edule HOM05D000147 ORTHO05D003093 9.3e-11 69.7 54 63.0
Solyc03g082630.3 Solanum lycopersicum HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
Sopen03g022390 Solanum pennellii HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
PGSC0003DMG400018513 Solanum tuberosum HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 57.6
THA.LOC104811899 Tarenaya hassleriana HOM05D000147 ORTHO05D003093 9.3e-11 69.7 59 55.9
THA.LOC104825160 Tarenaya hassleriana HOM05D000147 ORTHO05D003093 1.2e-10 69.3 59 57.6
Dinv29238 Davidia involucrata HOM05D000147 ORTHO05D003093 1.6e-10 68.9 59 57.6
Thhalv10025375m.g Eutrema salsugineum HOM05D000147 ORTHO05D003093 1.6e-10 68.9 59 57.6
Nitab4.5_0000015g0130 Nicotiana tabacum HOM05D000147 ORTHO05D003093 1.6e-10 68.9 59 59.3
Psat5g074280 Pisum sativum HOM05D000147 ORTHO05D003093 1.6e-10 68.9 59 59.3
Actinidia28272 Actinidia chinensis HOM05D000147 ORTHO05D003093 2.1e-10 68.6 54 64.8
SHI02332 Sapria himalayana HOM05D000147 ORTHO05D003093 2.1e-10 68.6 59 59.3
SGA_v2.0_scaffold18G08445 Striga asiatica HOM05D003194 ORTHO05D003790 2.1e-10 68.6 66 57.6
Cpa.g.sc3.126 Carica papaya HOM05D000147 ORTHO05D003093 2.7e-10 68.2 59 57.6
CDE04G0020 Ceratophyllum demersum HOM05D000147 ORTHO05D003093 2.7e-10 68.2 54 64.8
CDE12G0454 Ceratophyllum demersum HOM05D000147 ORTHO05D003093 2.7e-10 68.2 54 64.8
HanXRQChr04g0107071 Helianthus annuus HOM05D000147 ORTHO05D003093 2.7e-10 68.2 59 59.3
Phvul.001G075200 Phaseolus vulgaris HOM05D000147 ORTHO05D003093 2.7e-10 68.2 59 61.0
SGA_v2.0_scaffold141G35533 Striga asiatica HOM05D000147 ORTHO05D003093 2.7e-10 68.2 59 55.9
ATR0620G161 Amborella trichopoda HOM05D000147 ORTHO05D003093 3.5e-10 67.8 54 61.1
Mapoly0005s0041 Marchantia polymorpha HOM05D000147 ORTHO05D003093 3.5e-10 67.8 54 59.3
Peaxi162Scf00740g00424 Petunia axillaris HOM05D000147 ORTHO05D003093 3.5e-10 67.8 59 59.3
TAR636G0967 Trochodendron aralioides HOM05D000147 ORTHO05D003093 3.5e-10 67.8 54 61.1
PSO063G5430 Papaver somniferum HOM05D000147 ORTHO05D003093 4.6e-10 67.4 54 61.1
PSO782G1686 Papaver somniferum HOM05D000147 ORTHO05D003093 4.6e-10 67.4 54 61.1
Zm00001eb272360 Zea mays HOM05D000147 ORTHO05D003093 4.6e-10 67.4 61 54.1
arahy.Tifrunner.gnm1.ann1.CQR159 Arachis hypogaea HOM05D000147 ORTHO05D003093 6.1e-10 67.0 59 59.3
ECA232G4300 Erigeron canadensis HOM05D000147 ORTHO05D003093 6.1e-10 67.0 59 57.6
AagrBONN_evm.TU.Sc2ySwM_228.2753 Anthoceros agrestis HOM05D000147 ORTHO05D003093 7.9e-10 66.6 54 61.1
BcaC09g50549 Brassica carinata HOM05D000147 ORTHO05D003093 7.9e-10 66.6 59 55.9
BcaNung01640 Brassica carinata HOM05D000147 ORTHO05D003093 7.9e-10 66.6 59 55.9
A01p19120 Brassica napus HOM05D000147 ORTHO05D003093 7.9e-10 66.6 59 55.9
C01p24040 Brassica napus HOM05D003194 ORTHO05D003093 7.9e-10 66.6 59 55.9
BolC1t02360H Brassica oleracea HOM05D000147 ORTHO05D003093 7.9e-10 66.6 59 55.9
BraA01t01854Z Brassica rapa HOM05D000147 ORTHO05D003093 7.9e-10 66.6 59 55.9
Dinv02288 Davidia involucrata HOM05D000147 ORTHO05D003093 7.9e-10 66.6 54 57.4
VMungo0647G0381 Vigna mungo HOM05D000147 ORTHO05D003093 7.9e-10 66.6 54 63.0
Zm00001eb227980 Zea mays HOM05D000147 ORTHO05D003093 7.9e-10 66.6 63 52.4
arahy.Tifrunner.gnm1.ann1.W13BUI Arachis hypogaea HOM05D000147 ORTHO05D003093 1.0e-09 66.2 54 63.0
MSTRG.8628 Avicennia marina HOM05D000147 ORTHO05D003093 1.0e-09 66.2 59 55.9
SMO298G0059 Selaginella moellendorffii HOM05D000147 ORTHO05D003093 1.0e-09 66.2 54 63.0
Nn5g30648 Nelumbo nucifera HOM05D000147 ORTHO05D003093 1.3e-09 65.9 54 59.3
SalBow4G2884 Salvia bowleyana HOM05D000147 ORTHO05D003093 1.3e-09 65.9 54 59.3
Duzib068G0388 Durio zibethinus HOM05D000147 ORTHO05D003093 1.8e-09 65.5 59 55.9
ATR0568G102 Amborella trichopoda HOM05D000147 ORTHO05D003093 3.0e-09 64.7 54 53.7
AT5G53540 Arabidopsis thaliana HOM05D000147 ORTHO05D003093 3.0e-09 64.7 54 55.6
CARHR266680 Cardamine hirsuta HOM05D000147 ORTHO05D003093 3.0e-09 64.7 54 55.6
vmacro11508 Vaccinium macrocarpon HOM05D000147 ORTHO05D003093 5.1e-09 63.9 59 52.5
AL8G28270 Arabidopsis lyrata HOM05D000147 ORTHO05D003093 6.7e-09 63.5 54 53.7
Carub.0008s1371 Capsella rubella HOM05D000147 ORTHO05D003093 6.7e-09 63.5 54 53.7
Medtr3g092080 Medicago truncatula HOM05D000147 ORTHO05D003093 6.7e-09 63.5 54 57.4
Sopen08g031230 Solanum pennellii HOM05D000147 ORTHO05D003093 8.7e-09 63.2 61 50.8
PGSC0003DMG400012123 Solanum tuberosum HOM05D000147 ORTHO05D003093 8.7e-09 63.2 61 50.8
Aqoxy7G00027 Aquilegia oxysepala HOM05D000147 ORTHO05D003093 1.1e-08 62.8 59 52.5
Duzib205G0020 Durio zibethinus HOM05D000147 ORTHO05D003093 1.1e-08 62.8 56 55.4
Os06g0714500 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D003093 1.9e-08 62.0 54 59.3
CAN.G481.64 Capsicum annuum HOM05D000147 ORTHO05D003093 2.5e-08 61.6 60 53.3
CBR_g54795 Chara braunii HOM05D000147 ORTHO05D003093 2.5e-08 61.6 65 49.2
Actinidia22201 Actinidia chinensis HOM05D000147 ORTHO05D003093 5.7e-08 60.5 59 49.2
Thhalv10013746m.g Eutrema salsugineum HOM05D000147 ORTHO05D003093 5.7e-08 60.5 54 51.9
Nitab4.5_0004251g0040 Nicotiana tabacum HOM05D000147 ORTHO05D003093 1.6e-07 58.9 54 51.9
Nitab4.5_0007063g0020 Nicotiana tabacum HOM05D000147 ORTHO05D003093 1.6e-07 58.9 54 51.9
Lsat_1_v5_gn_3_13821 Lactuca sativa HOM05D000147 ORTHO05D003093 2.2e-07 58.5 59 50.8
Solyc08g083020.2 Solanum lycopersicum HOM05D000147 ORTHO05D003093 2.8e-07 58.2 61 47.5
Peaxi162Scf00074g00350 Petunia axillaris HOM05D000458 ORTHO05D000951 8.2e-07 56.6 63 49.2
Thecc.03G222000 Theobroma cacao HOM05D000147 ORTHO05D003093 1.1e-06 56.2 54 53.7
Rhsim02G0251500 Rhododendron simsii HOM05D000147 ORTHO05D003093 1.4e-06 55.8 59 45.8
CSS0049797 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D003093 3.1e-06 54.7 60 50.0
BcaB08g35718 Brassica carinata HOM05D000147 ORTHO05D003093 4.1e-06 54.3 54 48.1
Sp6g15680 Schrenkiella parvula HOM05D000147 ORTHO05D003093 4.1e-06 54.3 54 44.4
C03p17600 Brassica napus HOM05D000147 ORTHO05D003093 5.3e-06 53.9 54 48.1
BolC3t14173H Brassica oleracea HOM05D000147 ORTHO05D003093 5.3e-06 53.9 54 48.1
ECA246G2531 Erigeron canadensis HOM05D000147 ORTHO05D003093 9.0e-06 53.1 62 41.9


User provided reference genes

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