Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 4.4e-127 458.0 234 100.0
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 3.4e-111 405.2 234 87.6
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.7e-110 401.7 232 87.1
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.7e-110 401.7 232 87.1
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.9e-109 399.4 232 86.2
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 5.4e-109 397.9 234 86.3
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 1.6e-108 396.4 231 85.3
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 4.6e-108 394.8 232 84.1
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 7.8e-108 394.0 232 84.9
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 7.8e-108 394.0 232 83.6
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.3e-107 392.5 232 84.9
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 6.6e-107 391.0 232 87.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 4.3e-106 388.3 232 83.2
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 2.1e-105 386.0 232 83.2
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.4e-104 383.3 232 80.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.4e-104 383.3 232 80.6
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.3e-104 382.5 232 80.6
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 9.2e-101 370.5 234 83.8
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.1e-99 364.8 232 82.3
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 1.8e-96 356.3 230 76.1
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.3e-96 355.9 219 77.6
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.2e-95 353.6 230 75.7
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.5e-95 353.2 230 76.5
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.6e-95 352.4 219 76.3
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.4e-95 351.7 219 78.1
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.6e-95 350.9 219 76.7
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.3e-94 350.1 230 74.3
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.7e-94 349.7 230 75.2
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 2.2e-94 349.4 221 76.5
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.8e-94 348.6 230 72.6
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 8.4e-94 347.4 230 75.2
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 1.1e-93 347.1 221 74.7
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.1e-93 347.1 221 75.1
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 1.1e-93 347.1 221 75.1
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.2e-93 345.5 230 75.2
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.1e-93 344.4 230 74.8
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 9.2e-93 344.0 221 75.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 2.1e-92 342.8 219 76.7
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.7e-92 342.4 221 75.6
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 6.0e-92 341.3 230 71.3
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.0e-92 341.3 219 76.3
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.0e-91 340.5 221 74.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.0e-91 340.5 219 75.3
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.3e-91 340.1 235 72.8
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.7e-91 339.7 221 73.8
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.7e-91 339.7 220 75.9
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 2.3e-91 339.3 233 70.0
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 3.0e-91 339.0 228 70.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.1e-91 338.2 234 70.1
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 6.6e-91 337.8 241 70.5
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.6e-91 337.8 235 70.2
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 1.1e-90 337.0 230 74.3
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.5e-90 336.7 230 73.0
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.9e-90 336.3 219 72.6
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.5e-90 335.9 227 73.1
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 3.3e-90 335.5 219 72.6
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 9.6e-90 334.0 221 72.4
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 9.6e-90 334.0 214 75.2
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.6e-89 333.2 220 74.5
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 2.1e-89 332.8 220 74.5
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.8e-89 332.4 222 72.5
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.8e-89 332.4 225 72.4
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 4.7e-89 331.6 220 74.1
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 6.2e-89 331.3 220 73.6
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 6.2e-89 331.3 222 71.6
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.4e-88 330.1 220 73.2
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.4e-88 329.3 234 69.7
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 2.4e-88 329.3 214 75.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.1e-88 328.9 233 74.7
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 3.1e-88 328.9 233 74.7
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 5.2e-88 328.2 238 71.0
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 5.2e-88 328.2 230 70.0
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 6.9e-88 327.8 234 66.7
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 1.2e-87 327.0 230 73.0
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.0e-87 326.2 230 72.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 5.8e-87 324.7 222 69.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 7.6e-87 324.3 229 69.4
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 7.6e-87 324.3 229 69.9
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-86 323.6 223 73.1
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-86 323.6 223 73.1
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.7e-86 323.2 231 68.0
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.7e-86 323.2 220 73.2
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 2.2e-86 322.8 235 65.1
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 2.9e-86 322.4 234 67.5
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.9e-86 322.4 235 65.1
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.9e-86 322.4 230 71.7
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 4.9e-86 321.6 234 67.1
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 8.4e-86 320.9 230 67.4
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 8.4e-86 320.9 231 67.5
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.4e-85 320.1 230 68.7
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.9e-85 319.7 229 67.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.9e-85 319.7 229 68.6
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 2.4e-85 319.3 229 68.1
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 3.2e-85 318.9 230 70.9
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.4e-85 318.2 231 68.8
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 1.2e-84 317.0 226 68.6
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.2e-84 317.0 231 66.7
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.2e-84 317.0 231 66.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 2.1e-84 316.2 220 75.0
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.1e-84 316.2 229 68.6
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 2.7e-84 315.8 231 66.7
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.7e-84 315.8 231 67.1
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 2.7e-84 315.8 222 70.3
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.5e-84 315.5 229 67.2
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 4.6e-84 315.1 236 66.9
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 6.0e-84 314.7 229 67.2
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.3e-83 313.5 219 68.9
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 2.3e-83 312.8 210 71.4
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.7e-83 310.8 222 68.0
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 1.1e-82 310.5 228 65.4
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.1e-82 310.5 223 70.0
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 1.1e-82 310.5 236 69.5
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 2.5e-82 309.3 220 66.4
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.3e-81 307.0 230 70.9
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 1.1e-80 303.9 231 68.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 3.1e-80 302.4 261 59.4
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 5.3e-80 301.6 235 64.3
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.5e-79 300.1 222 66.2
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 8.4e-78 294.3 237 64.6
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 4.2e-77 292.0 228 64.9
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 5.4e-77 291.6 226 65.9
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-73 280.4 174 75.9
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 6.2e-73 278.1 230 64.3
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 8.1e-73 277.7 181 76.2
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 2.4e-72 276.2 234 61.1
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.0e-72 275.4 180 74.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 2.9e-70 269.2 236 64.0
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.6e-65 253.4 212 59.4
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 1.7e-62 243.4 159 76.1
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.7e-62 243.4 227 51.1
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 2.2e-62 243.0 231 57.6
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 4.2e-61 238.8 162 71.6
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 7.4e-58 228.0 179 65.4
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 8.2e-57 224.6 157 66.9
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 6.9e-56 221.5 178 65.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.7e-54 216.9 134 82.8
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 3.9e-51 205.7 225 48.0
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 8.7e-51 204.5 228 47.8
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 5.3e-48 195.3 132 72.7
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 5.9e-47 191.8 186 58.6
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.8e-46 189.1 180 59.4
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.2e-44 184.1 202 49.0
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.1e-44 183.3 118 73.7
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.6e-44 182.2 202 48.5
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 1.7e-38 163.7 98 83.7
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 1.3e-33 147.5 216 39.8
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 9.1e-32 141.4 99 63.6
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 7.7e-31 138.3 90 73.3
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 9.4e-29 131.3 152 47.4
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 6.1e-28 128.6 158 46.2
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 1.4e-24 117.5 220 35.0
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.2e-23 114.4 92 65.2
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 4.5e-23 112.5 104 58.7
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-22 110.9 61 83.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 5.0e-22 109.0 60 83.3
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.0e-22 109.0 60 83.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.0e-22 109.0 61 82.0
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 2.5e-21 106.7 90 57.8
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.4e-19 100.9 67 73.1
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 4.0e-19 99.4 202 30.2
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 1.1e-16 91.3 61 72.1
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.6e-15 87.4 66 71.2
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.7e-15 86.7 68 66.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 4.7e-12 75.9 115 36.5
Ah.13g065600 Amaranthus hybridus HOM05D000001 ORTHO05D010162 1.3e-09 67.8 39 82.1
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 4.1e-08 62.8 39 82.1
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 5.4e-08 62.4 39 66.7
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 2.0e-07 60.5 51 66.7
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 3.5e-07 59.7 153 28.1
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 1.0e-06 58.2 57 52.6
PGSC0003DMG401011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 5.0e-06 55.8 40 70.0


User provided reference genes

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