Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7112 Trifolium pratense HOM05D002670 ORTHO05D003079 1.6e-25 118.6 60 100.0
TPR.G25245 Trifolium pratense HOM05D002670 ORTHO05D003079 1.2e-23 112.5 60 96.7
Phvul.004G002800 Phaseolus vulgaris HOM05D002670 ORTHO05D003079 2.3e-16 88.2 60 80.0
Glyma.19G002400 Glycine max HOM05D002670 ORTHO05D003079 6.8e-16 86.7 60 78.3
Medtr6g004280 Medicago truncatula HOM05D002670 ORTHO05D003079 6.8e-16 86.7 58 81.0
VMungo0464G1136 Vigna mungo HOM05D002670 ORTHO05D003079 3.4e-15 84.3 60 76.7
Lj2g0019944 Lotus japonicus HOM05D002670 ORTHO05D003079 5.8e-15 83.6 60 75.0
Duzib133G0572 Durio zibethinus HOM05D002670 ORTHO05D003079 7.1e-13 76.6 60 71.7
CiPaw.04G044100 Carya illinoinensis HOM05D002670 ORTHO05D003079 1.2e-12 75.9 60 70.0
Ciclev10011795m.g Citrus clementina HOM05D002670 ORTHO05D003079 2.1e-12 75.1 60 66.7
Glyma.18G294300 Glycine max HOM05D002670 ORTHO05D003079 2.7e-12 74.7 60 71.7
VMungo1383G3475 Vigna mungo HOM05D002670 ORTHO05D003079 2.7e-12 74.7 60 70.0
Thecc.04G129500 Theobroma cacao HOM05D002670 ORTHO05D003079 7.8e-12 73.2 60 68.3
Manes.02G070700 Manihot esculenta HOM05D002670 ORTHO05D003079 1.0e-11 72.8 60 66.7
Glyma.02G088800 Glycine max HOM05D002670 ORTHO05D003079 2.3e-11 71.6 60 68.3
COL.COLO4_09363 Corchorus olitorius HOM05D002670 ORTHO05D003079 3.0e-11 71.2 60 66.7
Phvul.008G008100 Phaseolus vulgaris HOM05D002670 ORTHO05D003079 3.9e-11 70.9 60 70.0
arahy.Tifrunner.gnm1.ann1.DFW75Y Arachis hypogaea HOM05D002670 ORTHO05D003079 6.6e-11 70.1 60 66.7
arahy.Tifrunner.gnm1.ann1.L9A6A1 Arachis hypogaea HOM05D002670 ORTHO05D003079 6.6e-11 70.1 60 66.7
Gorai.008G056500 Gossypium raimondii HOM05D002670 ORTHO05D003079 8.6e-11 69.7 51 70.6
arahy.Tifrunner.gnm1.ann1.H8Z18X Arachis hypogaea HOM05D002670 ORTHO05D003079 1.9e-10 68.6 57 68.4
arahy.Tifrunner.gnm1.ann1.YG2QQU Arachis hypogaea HOM05D002670 ORTHO05D003079 1.9e-10 68.6 57 68.4
Atru.chr11.216 Acer truncatum HOM05D002670 ORTHO05D003079 2.5e-10 68.2 60 60.0
Gohir.D12G053300 Gossypium hirsutum HOM05D002670 ORTHO05D003079 3.3e-10 67.8 51 70.6
Lj1g0013074 Lotus japonicus HOM05D002670 ORTHO05D003079 3.3e-10 67.8 58 69.0
Medtr7g082570 Medicago truncatula HOM05D002670 ORTHO05D003079 3.3e-10 67.8 60 66.7
Duzib211G0486 Durio zibethinus HOM05D002670 ORTHO05D003079 4.3e-10 67.4 60 65.0
Eucgr.F02787 Eucalyptus grandis HOM05D002670 ORTHO05D003079 4.3e-10 67.4 60 63.3
Lj4A187T27 Lonicera japonica HOM05D002670 ORTHO05D003079 4.3e-10 67.4 60 60.0
Lj4A190T75 Lonicera japonica HOM05D002670 ORTHO05D003079 4.3e-10 67.4 60 60.0
PGR004G2596 Punica granatum HOM05D002670 ORTHO05D003079 5.6e-10 67.0 60 63.3
CiPaw.03G064400 Carya illinoinensis HOM05D002670 ORTHO05D003079 7.3e-10 66.6 60 60.0
Peaxi162Scf00179g00314 Petunia axillaris HOM05D002670 ORTHO05D003079 7.3e-10 66.6 60 56.7
QL02p050533 Quercus lobata HOM05D002670 ORTHO05D003079 7.3e-10 66.6 60 63.3
Aqoxy3G00209 Aquilegia oxysepala HOM05D002670 ORTHO05D003079 9.5e-10 66.2 51 66.7
Lj9A529T38 Lonicera japonica HOM05D002670 ORTHO05D003079 9.5e-10 66.2 53 66.0
Lalb_Chr06g0176711 Lupinus albus HOM05D002670 ORTHO05D003079 9.5e-10 66.2 60 70.0
Psat3g097960 Pisum sativum HOM05D002670 ORTHO05D003079 9.5e-10 66.2 60 63.3
TWI74G1610 Tripterygium wilfordii HOM05D002670 ORTHO05D003079 9.5e-10 66.2 60 63.3
Gohir.A12G054500 Gossypium hirsutum HOM05D002670 ORTHO05D003079 1.2e-09 65.9 51 68.6
GSVIVG01030990001 Vitis vinifera HOM05D002670 ORTHO05D003079 1.2e-09 65.9 61 60.7
Sabra17G0098000 Salix brachista HOM05D002670 ORTHO05D003079 1.6e-09 65.5 60 60.0
Nitab4.5_0000694g0160 Nicotiana tabacum HOM05D002670 ORTHO05D003079 2.8e-09 64.7 60 56.7
Nitab4.5_0002112g0040 Nicotiana tabacum HOM05D002670 ORTHO05D003079 2.8e-09 64.7 60 56.7
Lj2C439T12 Lonicera japonica HOM05D002670 ORTHO05D003079 3.6e-09 64.3 53 66.0
Psat0s4667g0040 Pisum sativum HOM05D002670 ORTHO05D003079 3.6e-09 64.3 60 68.3
Cpa.g.sc170.37 Carica papaya HOM05D002670 ORTHO05D003079 4.7e-09 63.9 51 64.7
Dinv34797 Davidia involucrata HOM05D002670 ORTHO05D003079 4.7e-09 63.9 60 61.7
TPR.G27889 Trifolium pratense HOM05D002670 ORTHO05D003079 4.7e-09 63.9 61 63.9
Atru.chr1.1623 Acer truncatum HOM05D002670 ORTHO05D003079 8.1e-09 63.2 60 56.7
QL02p049679 Quercus lobata HOM05D002670 ORTHO05D003079 8.1e-09 63.2 60 61.7
Lalb_Chr04g0257611 Lupinus albus HOM05D002670 ORTHO05D003079 1.1e-08 62.8 51 66.7
CARHR214480 Cardamine hirsuta HOM05D002670 ORTHO05D003079 1.4e-08 62.4 61 60.7
BcaB02g08017 Brassica carinata HOM05D002670 ORTHO05D003079 1.8e-08 62.0 61 60.7
BcaC08g44365 Brassica carinata HOM05D002670 ORTHO05D003079 1.8e-08 62.0 61 60.7
A07p19600 Brassica napus HOM05D002670 ORTHO05D003079 1.8e-08 62.0 61 60.7
BolC6t37006H Brassica oleracea HOM05D002670 ORTHO05D003079 1.8e-08 62.0 61 60.7
BraA07t29663Z Brassica rapa HOM05D002670 ORTHO05D003079 1.8e-08 62.0 61 60.7
Cc07_g08580 Coffea canephora HOM05D002670 ORTHO05D003079 1.8e-08 62.0 60 55.0
DCAR_025904 Daucus carota HOM05D002670 ORTHO05D003079 1.8e-08 62.0 60 58.3
HanXRQChr00c0303g0573311 Helianthus annuus HOM05D002670 ORTHO05D003079 1.8e-08 62.0 60 56.7
HanXRQChr14g0440461 Helianthus annuus HOM05D002670 ORTHO05D003079 2.3e-08 61.6 51 64.7
CAN.G610.29 Capsicum annuum HOM05D002670 ORTHO05D003079 3.1e-08 61.2 60 53.3
Cfa007897 Carpinus fangiana HOM05D002670 ORTHO05D003079 3.1e-08 61.2 52 61.5
Ciclev10015304m.g Citrus clementina HOM05D002670 ORTHO05D003079 3.1e-08 61.2 60 51.7
THA.LOC104805582 Tarenaya hassleriana HOM05D002670 ORTHO05D003079 3.1e-08 61.2 60 60.0
Actinidia36340 Actinidia chinensis HOM05D002670 ORTHO05D003079 4.0e-08 60.8 60 58.3
arahy.Tifrunner.gnm1.ann1.S9DR6Z Arachis hypogaea HOM05D002670 ORTHO05D003079 4.0e-08 60.8 60 60.0
arahy.Tifrunner.gnm1.ann1.UCTU69 Arachis hypogaea HOM05D002670 ORTHO05D003079 4.0e-08 60.8 60 60.0
C06p18000 Brassica napus HOM05D002670 ORTHO05D003079 4.0e-08 60.8 61 59.0
CAN.G625.47 Capsicum annuum HOM05D002670 ORTHO05D003079 4.0e-08 60.8 60 60.0
Migut.L00495 Erythranthe guttata HOM05D002670 ORTHO05D003079 4.0e-08 60.8 61 62.3
HanXRQChr14g0438541 Helianthus annuus HOM05D002670 ORTHO05D003079 4.0e-08 60.8 60 56.7
Carub.0005s1257 Capsella rubella HOM05D002670 ORTHO05D003079 5.2e-08 60.5 61 60.7
Nitab4.5_0002772g0010 Nicotiana tabacum HOM05D002670 ORTHO05D003079 5.2e-08 60.5 60 58.3
Oeu008436.1 Olea europaea HOM05D002670 ORTHO05D003079 5.2e-08 60.5 60 61.7
vmacro05529 Vaccinium macrocarpon HOM05D002670 ORTHO05D003079 5.2e-08 60.5 60 58.3
Rhsim10G0069900 Rhododendron simsii HOM05D002670 ORTHO05D003079 6.8e-08 60.1 60 60.0
AL7G52660 Arabidopsis lyrata HOM05D002670 ORTHO05D003079 8.9e-08 59.7 61 60.7
HanXRQChr14g0438531 Helianthus annuus HOM05D002670 ORTHO05D003079 8.9e-08 59.7 60 55.0
HanXRQChr16g0509391 Helianthus annuus HOM05D002670 ORTHO05D003079 8.9e-08 59.7 60 55.0
PGSC0003DMG400026382 Solanum tuberosum HOM05D002670 ORTHO05D003079 8.9e-08 59.7 60 58.3
Nn3g17942 Nelumbo nucifera HOM05D002670 ORTHO05D003079 1.2e-07 59.3 52 59.6
ECA238G4203 Erigeron canadensis HOM05D002670 ORTHO05D003079 1.5e-07 58.9 60 53.3
Lsat_1_v5_gn_2_81020 Lactuca sativa HOM05D002670 ORTHO05D003079 1.5e-07 58.9 60 55.0
Sc11g0003640 Simmondsia chinensis HOM05D002670 ORTHO05D003079 1.5e-07 58.9 60 53.3
Aa31LG9G17190 Aethionema arabicum HOM05D002670 ORTHO05D003079 2.0e-07 58.5 51 60.8
AT5G38200 Arabidopsis thaliana HOM05D002670 ORTHO05D003079 2.0e-07 58.5 61 59.0
Cpa.g.sc65.62 Carica papaya HOM05D002670 ORTHO05D003079 2.0e-07 58.5 60 53.3
Dinv16129 Davidia involucrata HOM05D002670 ORTHO05D003079 2.0e-07 58.5 58 50.0
Thhalv10027778m.g Eutrema salsugineum HOM05D002670 ORTHO05D003079 2.0e-07 58.5 61 59.0
QL01p010858 Quercus lobata HOM05D002670 ORTHO05D003079 2.0e-07 58.5 60 56.7
Hund16180 Selenicereus undatus HOM05D002670 ORTHO05D003079 2.0e-07 58.5 58 55.2
Solyc02g086300.4 Solanum lycopersicum HOM05D002670 ORTHO05D003079 2.0e-07 58.5 60 58.3
Sopen02g030980 Solanum pennellii HOM05D002670 ORTHO05D003079 2.0e-07 58.5 60 58.3
Peaxi162Scf00104g00148 Petunia axillaris HOM05D002670 ORTHO05D003079 3.4e-07 57.8 60 56.7
Sp7g03890 Schrenkiella parvula HOM05D002670 ORTHO05D003079 3.4e-07 57.8 61 57.4
Dinv16126 Davidia involucrata HOM05D002670 ORTHO05D003079 4.4e-07 57.4 58 48.3
Oeu030794.1 Olea europaea HOM05D002670 ORTHO05D003079 4.4e-07 57.4 60 60.0
Prupe.3G147100 Prunus persica HOM05D002670 ORTHO05D003079 4.4e-07 57.4 53 56.6
AUR62002821 Chenopodium quinoa HOM05D002670 ORTHO05D003079 5.8e-07 57.0 52 59.6
AUR62037284 Chenopodium quinoa HOM05D002670 ORTHO05D003079 5.8e-07 57.0 52 59.6
CAN.G82.17 Capsicum annuum HOM05D002670 ORTHO05D003079 9.9e-07 56.2 49 65.3
CARHR059000 Cardamine hirsuta HOM05D002670 ORTHO05D003079 9.9e-07 56.2 49 59.2
CsaV3_2G033820 Cucumis sativus L. HOM05D002670 ORTHO05D003079 9.9e-07 56.2 54 61.1
ECA232G1450 Erigeron canadensis HOM05D002670 ORTHO05D000318 9.9e-07 56.2 51 54.9
Sp5g21850 Schrenkiella parvula HOM05D002670 ORTHO05D003079 9.9e-07 56.2 48 62.5
CSS0026920 Camellia sinensis var. sinensis HOM05D002670 ORTHO05D003079 1.3e-06 55.8 60 58.3
CSS0037856 Camellia sinensis var. sinensis HOM05D002670 ORTHO05D003079 1.3e-06 55.8 60 50.0
Potri.017G118551 Populus trichocarpa HOM05D002670 ORTHO05D003079 1.3e-06 55.8 60 56.7
CANSAT78G0266 Cannabis sativa HOM05D002670 ORTHO05D003079 1.7e-06 55.5 61 55.7
MELO3C008152.2 Cucumis melo HOM05D002670 ORTHO05D003079 1.7e-06 55.5 54 59.3
Dinv31600 Davidia involucrata HOM05D002670 ORTHO05D003079 1.7e-06 55.5 60 51.7
EL10Ac6g14315 Beta vulgaris HOM05D002670 ORTHO05D003079 2.2e-06 55.1 60 53.3
BcaC03g14768 Brassica carinata HOM05D002670 ORTHO05D003079 2.2e-06 55.1 48 60.4
A02p13770 Brassica napus HOM05D002670 ORTHO05D003079 2.2e-06 55.1 48 60.4
C02p22140 Brassica napus HOM05D002670 ORTHO05D003079 2.2e-06 55.1 48 60.4
BraA02t06434Z Brassica rapa HOM05D002670 ORTHO05D003079 2.2e-06 55.1 48 60.4
ClCG11G007760 Citrullus lanatus HOM05D002670 ORTHO05D003079 2.9e-06 54.7 54 59.3
Nitab4.5_0000753g0140 Nicotiana tabacum HOM05D002670 ORTHO05D003079 2.9e-06 54.7 59 55.9
Nitab4.5_0003652g0010 Nicotiana tabacum HOM05D002670 ORTHO05D003079 2.9e-06 54.7 59 55.9
Solyc03g034320.3 Solanum lycopersicum HOM05D002670 ORTHO05D003079 2.9e-06 54.7 60 56.7
Sopen03g007100 Solanum pennellii HOM05D002670 ORTHO05D003079 2.9e-06 54.7 60 56.7
PGSC0003DMG400024374 Solanum tuberosum HOM05D002670 ORTHO05D003079 2.9e-06 54.7 60 56.7
BcaB05g24200 Brassica carinata HOM05D002670 ORTHO05D003079 3.7e-06 54.3 48 60.4
SalBow5G5472 Salvia bowleyana HOM05D002670 ORTHO05D003079 3.7e-06 54.3 53 62.3
SalBow5G5671 Salvia bowleyana HOM05D002670 ORTHO05D003079 3.7e-06 54.3 53 62.3
SGA_v2.0_scaffold1G00627 Striga asiatica HOM05D002670 ORTHO05D003079 3.7e-06 54.3 65 53.8
Lsat_1_v5_gn_4_155800 Lactuca sativa HOM05D002670 ORTHO05D003079 4.9e-06 53.9 60 48.3
Carub.0002s1309 Capsella rubella HOM05D002670 ORTHO05D003079 6.4e-06 53.5 48 60.4
MBI16_g42428_MAGBIO Magnolia biondii HOM05D002670 ORTHO05D003079 6.4e-06 53.5 60 51.7
Sed0001063 Sechium edule HOM05D002670 ORTHO05D003079 8.4e-06 53.1 54 59.3
Solyc05g008910.3 Solanum lycopersicum HOM05D002670 ORTHO05D003079 8.4e-06 53.1 61 49.2


User provided reference genes

Program Settings