Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7051 Trifolium pratense HOM05D004395 ORTHO05D005234 1.8e-26 121.7 58 100.0
TPR.G19763 Trifolium pratense HOM05D004395 ORTHO05D005234 1.5e-23 112.1 57 94.7
arahy.Tifrunner.gnm1.ann1.NCI439 Arachis hypogaea HOM05D004395 ORTHO05D005234 3.3e-23 110.9 57 93.0
arahy.Tifrunner.gnm1.ann1.TUT6I7 Arachis hypogaea HOM05D004395 ORTHO05D005234 3.3e-23 110.9 57 93.0
Ca_30262_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 5.6e-23 110.2 57 93.0
Glyma.10G014200 Glycine max HOM05D004395 ORTHO05D005234 5.6e-23 110.2 57 93.0
Lj5g0013155 Lotus japonicus HOM05D004395 ORTHO05D005234 9.5e-23 109.4 57 89.5
Psat6g162440 Pisum sativum HOM05D004395 ORTHO05D005234 1.2e-22 109.0 57 93.0
Medtr1g087320 Medicago truncatula HOM05D004395 ORTHO05D005234 2.1e-22 108.2 57 91.2
Sed0020172 Sechium edule HOM05D004395 ORTHO05D005234 4.7e-22 107.1 57 87.7
Phvul.007G215400 Phaseolus vulgaris HOM05D004395 ORTHO05D005234 8.0e-22 106.3 57 89.5
VMungo0720G1854 Vigna mungo HOM05D004395 ORTHO05D005234 8.0e-22 106.3 57 89.5
Lalb_Chr02g0146721 Lupinus albus HOM05D004395 ORTHO05D005234 1.4e-21 105.5 57 89.5
Cfa005822 Carpinus fangiana HOM05D004395 ORTHO05D005234 1.8e-21 105.1 57 87.7
ClCG09G005210 Citrullus lanatus HOM05D004395 ORTHO05D005234 1.8e-21 105.1 57 87.7
MELO3C015935.2 Cucumis melo HOM05D004395 ORTHO05D005234 1.8e-21 105.1 57 87.7
CsaV3_7G029860 Cucumis sativus L. HOM05D004395 ORTHO05D005234 1.8e-21 105.1 57 87.7
MBI18_g28456_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 2.3e-21 104.8 57 87.7
Actinidia21008 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.1e-21 104.4 57 87.7
Actinidia25840 Actinidia chinensis HOM05D004395 ORTHO05D005234 3.1e-21 104.4 57 87.7
Aa31LG10G16400 Aethionema arabicum HOM05D004395 ORTHO05D005234 3.1e-21 104.4 57 86.0
CANSAT25G2014 Cannabis sativa HOM05D004395 ORTHO05D005234 3.1e-21 104.4 57 89.5
DCAR_002879 Daucus carota HOM05D004395 ORTHO05D005234 3.1e-21 104.4 57 86.0
QL01p046128 Quercus lobata HOM05D004395 ORTHO05D005234 3.1e-21 104.4 57 87.7
Eucgr.K03533 Eucalyptus grandis HOM05D004395 ORTHO05D005234 4.0e-21 104.0 57 87.7
Nn3g21647 Nelumbo nucifera HOM05D004395 ORTHO05D005234 4.0e-21 104.0 57 86.0
COL.COLO4_23252 Corchorus olitorius HOM05D004395 ORTHO05D005234 5.2e-21 103.6 57 84.2
Lalb_Chr21g0309501 Lupinus albus HOM05D004395 ORTHO05D005234 5.2e-21 103.6 57 87.7
PSO210G6304 Papaver somniferum HOM05D004395 ORTHO05D005234 5.2e-21 103.6 57 86.0
PSO761G0048 Papaver somniferum HOM05D004395 ORTHO05D005234 5.2e-21 103.6 57 86.0
Prupe.8G270400 Prunus persica HOM05D004395 ORTHO05D005234 5.2e-21 103.6 57 86.0
RcHm_v2.0_Chr7g0241771 Rosa chinensis HOM05D004395 ORTHO05D005234 5.2e-21 103.6 57 86.0
MD03G1296800 Malus domestica HOM05D004395 ORTHO05D005234 6.8e-21 103.2 57 86.0
THA.LOC104827672 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 6.8e-21 103.2 57 86.0
Aqoxy2G02790 Aquilegia oxysepala HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 86.0
AUR62011832 Chenopodium quinoa HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 82.5
AUR62024674 Chenopodium quinoa HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 82.5
ECA236G4761 Erigeron canadensis HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 86.0
Migut.D00093 Erythranthe guttata HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 87.7
Lsat_1_v5_gn_8_166540 Lactuca sativa HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 86.0
SalBow3G3242 Salvia bowleyana HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 86.0
THA.LOC104800347 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 84.2
unitig_60.g25658 Utricularia gibba HOM05D004395 ORTHO05D005234 8.9e-21 102.8 57 87.7
Manes.05G002300 Manihot esculenta HOM05D004395 ORTHO05D005234 1.2e-20 102.4 57 87.7
THA.LOC104817465 Tarenaya hassleriana HOM05D004395 ORTHO05D005234 1.2e-20 102.4 57 84.2
vmacro15119 Vaccinium macrocarpon HOM05D004395 ORTHO05D005234 1.2e-20 102.4 57 86.0
Ciclev10022218m.g Citrus clementina HOM05D004395 ORTHO05D005234 1.5e-20 102.1 57 86.0
Lj2A1204T57 Lonicera japonica HOM05D004395 ORTHO05D005234 2.0e-20 101.7 57 84.2
TWI75G0438 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 2.0e-20 101.7 57 86.0
CiPaw.07G115900 Carya illinoinensis HOM05D004395 ORTHO05D005234 2.6e-20 101.3 57 84.2
FvH4_5g39460 Fragaria vesca HOM05D004395 ORTHO05D005234 2.6e-20 101.3 57 82.5
FAN08G2141 Fragaria x ananassa HOM05D004395 ORTHO05D005234 2.6e-20 101.3 57 82.5
FAN18G1082 Fragaria x ananassa HOM05D004395 ORTHO05D005234 2.6e-20 101.3 57 82.5
Manes.01G226500 Manihot esculenta HOM05D004395 ORTHO05D005234 2.6e-20 101.3 57 84.2
Potri.002G197800 Populus trichocarpa HOM05D004395 ORTHO05D005234 2.6e-20 101.3 57 86.0
Atru.chr5.1037 Acer truncatum HOM05D004395 ORTHO05D005234 3.4e-20 100.9 57 84.2
Ah.02g112150 Amaranthus hybridus HOM05D004395 ORTHO05D005234 3.4e-20 100.9 57 82.5
Hund09618 Selenicereus undatus HOM05D004395 ORTHO05D005234 3.4e-20 100.9 57 82.5
TWI18G0814 Tripterygium wilfordii HOM05D004395 ORTHO05D005234 3.4e-20 100.9 57 86.0
unitig_0.g274 Utricularia gibba HOM05D004395 ORTHO05D005234 3.4e-20 100.9 57 86.0
ATR0706G165 Amborella trichopoda HOM05D004395 ORTHO05D005234 4.4e-20 100.5 57 82.5
FAN13G1316 Fragaria x ananassa HOM05D004395 ORTHO05D005234 4.4e-20 100.5 57 82.5
Thecc.01G311200 Theobroma cacao HOM05D004395 ORTHO05D005234 4.4e-20 100.5 57 82.5
FAN04G0288 Fragaria x ananassa HOM05D004395 ORTHO05D005234 5.8e-20 100.1 57 80.7
HanXRQChr06g0167821 Helianthus annuus HOM05D004395 ORTHO05D005234 5.8e-20 100.1 57 84.2
Rhsim01G0289900 Rhododendron simsii HOM05D004395 ORTHO05D005234 5.8e-20 100.1 57 82.5
CSS0011400 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 7.5e-20 99.8 57 82.5
CSS0015284 Camellia sinensis var. sinensis HOM05D004395 ORTHO05D005234 7.5e-20 99.8 57 82.5
CARHR172840 Cardamine hirsuta HOM05D004395 ORTHO05D005234 7.5e-20 99.8 57 86.0
Dinv33105 Davidia involucrata HOM05D004395 ORTHO05D005234 7.5e-20 99.8 57 82.5
Nitab4.5_0000906g0030 Nicotiana tabacum HOM05D004395 ORTHO05D005234 7.5e-20 99.8 57 84.2
AT3G62580 Arabidopsis thaliana HOM05D004395 ORTHO05D005234 9.8e-20 99.4 57 86.0
CAN.G362.41 Capsicum annuum HOM05D004395 ORTHO05D005234 9.8e-20 99.4 57 84.2
Oeu008460.1 Olea europaea HOM05D004395 ORTHO05D005234 9.8e-20 99.4 57 86.0
PGR044G2039 Punica granatum HOM05D004395 ORTHO05D005234 9.8e-20 99.4 57 82.5
Sp5g00920 Schrenkiella parvula HOM05D004395 ORTHO05D005234 9.8e-20 99.4 57 86.0
AL5G45330 Arabidopsis lyrata HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
BcaC07g40733 Brassica carinata HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
BcaC07g42768 Brassica carinata HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
A09p54450 Brassica napus HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
C08p37340 Brassica napus HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
BolC8t51312H Brassica oleracea HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
BraA09t40858Z Brassica rapa HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
Carub.0005s2924 Capsella rubella HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
Thhalv10006236m.g Eutrema salsugineum HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 86.0
Gohir.A11G110300 Gossypium hirsutum HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 82.5
Gohir.D11G115400 Gossypium hirsutum HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 82.5
Gorai.007G123500 Gossypium raimondii HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 82.5
Sc17g0000530 Simmondsia chinensis HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 80.7
PGSC0003DMG400009034 Solanum tuberosum HOM05D004395 ORTHO05D005234 1.3e-19 99.0 57 82.5
Cpa.g.sc18.20 Carica papaya HOM05D004395 ORTHO05D005234 1.7e-19 98.6 57 80.7
Cc01_g21280 Coffea canephora HOM05D004395 ORTHO05D005234 1.7e-19 98.6 57 82.5
Eucgr.K03534 Eucalyptus grandis HOM05D004395 ORTHO05D005234 1.7e-19 98.6 57 80.7
MD11G1316400 Malus domestica HOM05D004395 ORTHO05D005234 1.7e-19 98.6 57 84.2
Nitab4.5_0001301g0120 Nicotiana tabacum HOM05D004395 ORTHO05D005234 1.7e-19 98.6 57 82.5
Solyc01g079590.3 Solanum lycopersicum HOM05D004395 ORTHO05D005234 2.2e-19 98.2 57 82.5
Sopen01g031370 Solanum pennellii HOM05D004395 ORTHO05D005234 2.2e-19 98.2 57 82.5
TAR365G0011 Trochodendron aralioides HOM05D004395 ORTHO05D005234 2.2e-19 98.2 57 78.9
GSVIVG01028100001 Vitis vinifera HOM05D004395 ORTHO05D005234 2.9e-19 97.8 57 84.2
Duzib138G1253 Durio zibethinus HOM05D004395 ORTHO05D005234 3.7e-19 97.4 57 78.9
Os12g0557400 Oryza sativa ssp. japonica HOM05D004395 ORTHO05D005234 3.7e-19 97.4 57 80.7
Peaxi162Scf00001g10221 Petunia axillaris HOM05D004395 ORTHO05D005234 3.7e-19 97.4 57 82.5
MSTRG.21675 Avicennia marina HOM05D004395 ORTHO05D005234 6.4e-19 96.7 57 78.9
Dinv33106 Davidia involucrata HOM05D004395 ORTHO05D005234 6.4e-19 96.7 57 77.2
SGA_v2.0_scaffold334G49058 Striga asiatica HOM05D004395 ORTHO05D005234 6.4e-19 96.7 54 83.3
Zm00001eb028370 Zea mays HOM05D004395 ORTHO05D005234 6.4e-19 96.7 57 80.7
Zm00001eb137060 Zea mays HOM05D004395 ORTHO05D005234 6.4e-19 96.7 57 80.7
CDE02G0047 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 8.3e-19 96.3 57 78.9
Gorai.004G143800 Gossypium raimondii HOM05D004395 ORTHO05D005234 1.4e-18 95.5 57 80.7
Dinv10080 Davidia involucrata HOM05D004395 ORTHO05D005234 2.4e-18 94.7 57 80.7
AagrBONN_evm.TU.Sc2ySwM_344.4364 Anthoceros agrestis HOM05D004395 ORTHO05D005234 4.1e-18 94.0 57 75.4
Oeu047386.1 Olea europaea HOM05D004395 ORTHO05D005234 5.4e-18 93.6 57 80.7
Sabra02G0159800 Salix brachista HOM05D004395 ORTHO05D005234 7.0e-18 93.2 57 80.7
TAR633G1754 Trochodendron aralioides HOM05D004395 ORTHO05D005234 2.0e-17 91.7 57 75.4
TAR633G1975 Trochodendron aralioides HOM05D004395 ORTHO05D005234 2.0e-17 91.7 57 75.4
Gohir.A08G119000 Gossypium hirsutum HOM05D004395 ORTHO05D005234 3.5e-17 90.9 57 77.2
Sc05g0000520 Simmondsia chinensis HOM05D004395 ORTHO05D005234 6.0e-17 90.1 57 77.2
Os11g0673100 Oryza sativa ssp. japonica HOM05D004395 ORTHO05D005234 7.8e-17 89.7 57 75.4
Sc17g0000520 Simmondsia chinensis HOM05D004395 ORTHO05D005234 7.8e-17 89.7 57 75.4
CDE09G1198 Ceratophyllum demersum HOM05D004395 ORTHO05D005234 2.3e-16 88.2 57 73.7
SEGI_05878 Sequoiadendron giganteum HOM05D004395 ORTHO05D005234 1.1e-15 85.9 56 73.2
SMO367G0059 Selaginella moellendorffii HOM05D004395 ORTHO05D005234 1.9e-15 85.1 57 68.4
Pp3c20_10750 Physcomitrium patens HOM05D004395 ORTHO05D005234 3.6e-14 80.9 57 64.9
Oeu009086.1 Olea europaea HOM05D004395 ORTHO05D005234 8.1e-14 79.7 54 74.1
CBR_g50787 Chara braunii HOM05D004395 ORTHO05D005234 4.4e-12 73.9 56 60.7
Haze_05020 Corylus avellana HOM05D004395 ORTHO05D005234 4.4e-12 73.9 57 59.6
Haze_05024 Corylus avellana HOM05D004395 ORTHO05D005234 7.5e-12 73.2 57 61.4
Haze_05023 Corylus avellana HOM05D004395 ORTHO05D005234 1.3e-11 72.4 57 59.6
Ca_10293_v3 Cicer arietinum L. HOM05D004395 ORTHO05D005234 7.1e-10 66.6 34 91.2
Eucgr.K03536 Eucalyptus grandis HOM05D004395 ORTHO05D005234 3.5e-09 64.3 50 62.0
MBI18_g28451_MAGBIO Magnolia biondii HOM05D004395 ORTHO05D005234 3.9e-08 60.8 50 58.0
Mapoly0073s0092 Marchantia polymorpha HOM05D004395 ORTHO05D005234 6.6e-08 60.1 57 52.6
RcHm_v2.0_Chr7g0229621 Rosa chinensis HOM05D004395 ORTHO05D005234 8.6e-08 59.7 36 80.6
Cfa005821 Carpinus fangiana HOM05D004395 ORTHO05D005234 2.1e-06 55.1 40 65.0


User provided reference genes

Program Settings