Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7047 Trifolium pratense HOM05D000055 ORTHO05D412343 5.5e-27 123.6 65 100.0
TPR.G10861 Trifolium pratense HOM05D000055 ORTHO05D411526 2.9e-20 101.3 70 82.9
Oeu031188.1 Olea europaea HOM05D000055 ORTHO05D000057 6.3e-07 57.0 33 78.8
Potri.018G119200 Populus trichocarpa HOM05D000055 ORTHO05D000057 1.4e-06 55.8 33 78.8
Sabra18G0104300 Salix brachista HOM05D000055 ORTHO05D000057 1.4e-06 55.8 33 78.8
SHI45466 Sapria himalayana HOM05D000055 ORTHO05D012318 1.4e-06 55.8 37 70.3
Atru.chr10.1129 Acer truncatum HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Actinidia03346 Actinidia chinensis HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Actinidia13447 Actinidia chinensis HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
BcaB07g32626 Brassica carinata HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
CAN.G565.4 Capsicum annuum HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Cfa000906 Carpinus fangiana HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
CiPaw.09G120600 Carya illinoinensis HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
ClCG03G006540 Citrullus lanatus HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Cc00_g01990 Coffea canephora HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
COL.COLO4_31018 Corchorus olitorius HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Haze_05653 Corylus avellana HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
MELO3C002766.2 Cucumis melo HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
CsaV3_1G036820 Cucumis sativus L. HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
DCAR_003892 Daucus carota HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Dinv21528 Davidia involucrata HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Dinv21529 Davidia involucrata HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Duzib160G0249 Durio zibethinus HOM05D002115 ORTHO05D002263 2.4e-06 55.1 33 78.8
Duzib192G0494 Durio zibethinus HOM05D002115 ORTHO05D002263 2.4e-06 55.1 33 78.8
Glyma.09G089700 Glycine max HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Nitab4.5_0004752g0030 Nicotiana tabacum HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Oeu015151.1 Olea europaea HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Peaxi162Scf00465g00095 Petunia axillaris HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Phvul.009G213000 Phaseolus vulgaris HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Rhsim13G0117100 Rhododendron simsii HOM05D000055 ORTHO05D001299 2.4e-06 55.1 33 78.8
RcHm_v2.0_Chr5g0014761 Rosa chinensis HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
SalBow8G1938 Salvia bowleyana HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Sed0019082 Sechium edule HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Solyc02g021440.4 Solanum lycopersicum HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
Sopen02g005920 Solanum pennellii HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
PGSC0003DMG400031335 Solanum tuberosum HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
THA.LOC104812679 Tarenaya hassleriana HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
TPR.G31227 Trifolium pratense HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
vmacro03435 Vaccinium macrocarpon HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
VMungo1309G1378 Vigna mungo HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
GSVIVG01021541001 Vitis vinifera HOM05D000055 ORTHO05D000057 2.4e-06 55.1 33 78.8
CSS0022438 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 3.1e-06 54.7 33 75.8
CSS0041870 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 3.1e-06 54.7 33 75.8
Nn3g20370 Nelumbo nucifera HOM05D000055 ORTHO05D000057 3.1e-06 54.7 33 75.8
Thecc.06G145200 Theobroma cacao HOM05D000055 ORTHO05D000057 3.1e-06 54.7 33 75.8
MSTRG.16262 Avicennia marina HOM05D000055 ORTHO05D000057 4.1e-06 54.3 27 92.6
Ciclev10015157m.g Citrus clementina HOM05D000055 ORTHO05D000057 4.1e-06 54.3 27 92.6
Gohir.A10G043500 Gossypium hirsutum HOM05D000055 ORTHO05D000057 4.1e-06 54.3 27 92.6
Gohir.D10G044700 Gossypium hirsutum HOM05D000055 ORTHO05D000057 4.1e-06 54.3 27 92.6
Gorai.011G047700 Gossypium raimondii HOM05D000055 ORTHO05D000057 4.1e-06 54.3 27 92.6
BraA08t34413Z Brassica rapa HOM05D000055 ORTHO05D000057 5.3e-06 53.9 33 75.8
CDE12G0559 Ceratophyllum demersum HOM05D000055 ORTHO05D000057 5.3e-06 53.9 33 75.8
DCAR_007877 Daucus carota HOM05D000055 ORTHO05D000057 5.3e-06 53.9 33 75.8
SGA_v2.0_scaffold120G32939 Striga asiatica HOM05D000055 ORTHO05D000057 5.3e-06 53.9 33 75.8
SGA_v2.0_scaffold146G36130 Striga asiatica HOM05D000055 ORTHO05D000057 5.3e-06 53.9 33 75.8
Aqoxy4G00082 Aquilegia oxysepala HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
AL1G44220 Arabidopsis lyrata HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
AT1G30270 Arabidopsis thaliana HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BcaB03g12206 Brassica carinata HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BcaB03g13838 Brassica carinata HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BcaC05g27056 Brassica carinata HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BcaC06g35498 Brassica carinata HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
A07p10020 Brassica napus HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
A08p24570 Brassica napus HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
A09p36220 Brassica napus HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
C05p29130 Brassica napus HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
C07p15280 Brassica napus HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BolC5t31643H Brassica oleracea HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BolC7t42031H Brassica oleracea HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BraA07t28792Z Brassica rapa HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
BraA09t39149Z Brassica rapa HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
CSS0026333 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
CSS0026884 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
CARHR029660 Cardamine hirsuta HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
CiPaw.10G089200 Carya illinoinensis HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Thhalv10007518m.g Eutrema salsugineum HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
FvH4_3g05110 Fragaria vesca HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
FAN11G0409 Fragaria x ananassa HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
FAN16G1259 Fragaria x ananassa HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
FAN16G1268 Fragaria x ananassa HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
FAN25G1044 Fragaria x ananassa HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Gohir.A09G077000 Gossypium hirsutum HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Gohir.D09G076900 Gossypium hirsutum HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Gorai.006G092100 Gossypium raimondii HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Hma1.2p1_0594F.1_g185970 Hydrangea macrophylla HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Lj6g0025077 Lotus japonicus HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Sp1g26110 Schrenkiella parvula HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
Sed0018703 Sechium edule HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
THA.LOC104820659 Tarenaya hassleriana HOM05D000055 ORTHO05D000057 6.9e-06 53.5 33 75.8
MSTRG.7508 Avicennia marina HOM05D000055 ORTHO05D000057 9.0e-06 53.1 33 75.8
Manes.15G124575 Manihot esculenta HOM05D000055 ORTHO05D000057 9.0e-06 53.1 33 75.8
PGR083G0720 Punica granatum HOM05D000055 ORTHO05D000057 9.0e-06 53.1 33 75.8


User provided reference genes

Program Settings