Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7026 Trifolium pratense HOM05D004025 ORTHO05D004929 2.9e-27 124.4 59 100.0
Ca_17642_v3 Cicer arietinum L. HOM05D002604 ORTHO05D004929 1.0e-24 115.9 59 91.5
Medtr8g093570 Medicago truncatula HOM05D004025 ORTHO05D004929 1.3e-24 115.5 56 96.4
Psat7g045720 Pisum sativum HOM05D004025 ORTHO05D004929 5.1e-24 113.6 56 94.6
Glyma.05G191200 Glycine max HOM05D004025 ORTHO05D004929 6.3e-22 106.7 56 85.7
Glyma.08G156400 Glycine max HOM05D004025 ORTHO05D004929 6.3e-22 106.7 56 85.7
Lj4g0019129 Lotus japonicus HOM05D004025 ORTHO05D004929 8.2e-22 106.3 56 83.9
Lalb_Chr08g0238391 Lupinus albus HOM05D004025 ORTHO05D004929 1.1e-21 105.9 56 89.3
Phvul.002G271500 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 2.4e-21 104.8 56 83.9
VMungo0251G2658 Vigna mungo HOM05D004025 ORTHO05D004929 5.3e-21 103.6 56 82.1
Glyma.04G213400 Glycine max HOM05D004025 ORTHO05D004929 6.9e-21 103.2 56 85.7
Lj1g0010712 Lotus japonicus HOM05D004025 ORTHO05D004929 9.0e-21 102.8 56 83.9
Phvul.009G149800 Phaseolus vulgaris HOM05D004025 ORTHO05D004929 1.2e-20 102.4 56 85.7
Lalb_Chr12g0203161 Lupinus albus HOM05D004025 ORTHO05D004929 1.5e-20 102.1 56 80.4
Ca_16939_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.0e-20 101.7 56 83.9
Ca_16958_v3 Cicer arietinum L. HOM05D004025 ORTHO05D004929 2.0e-20 101.7 56 83.9
Glyma.06G152800 Glycine max HOM05D004025 ORTHO05D004929 2.0e-20 101.7 56 83.9
VMungo1309G0837 Vigna mungo HOM05D004025 ORTHO05D004929 3.4e-20 100.9 56 83.9
TPR.G34649 Trifolium pratense HOM05D004025 ORTHO05D004929 5.9e-20 100.1 56 83.9
arahy.Tifrunner.gnm1.ann1.GI519K Arachis hypogaea HOM05D004025 ORTHO05D004929 1.0e-19 99.4 56 80.4
arahy.Tifrunner.gnm1.ann1.T69UQ6 Arachis hypogaea HOM05D004025 ORTHO05D004929 1.0e-19 99.4 56 80.4
arahy.Tifrunner.gnm1.ann1.P4XMCK Arachis hypogaea HOM05D004025 ORTHO05D004929 2.9e-19 97.8 56 82.1
Medtr3g096110 Medicago truncatula HOM05D004025 ORTHO05D004929 1.4e-18 95.5 56 78.6
Psat0s2140g0080 Pisum sativum HOM05D004025 ORTHO05D004929 1.9e-18 95.1 56 80.4
Cpa.g.sc42.143 Carica papaya HOM05D004025 ORTHO05D004929 3.2e-18 94.4 57 78.9
CiPaw.04G083500 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.6e-17 92.0 57 75.4
Ciclev10000085m.g Citrus clementina HOM05D004025 ORTHO05D004929 1.6e-17 92.0 57 75.4
RcHm_v2.0_Chr2g0120731 Rosa chinensis HOM05D004025 ORTHO05D004929 6.1e-17 90.1 57 71.9
Cfa002885 Carpinus fangiana HOM05D004025 ORTHO05D004929 1.0e-16 89.4 57 73.7
Haze_25220 Corylus avellana HOM05D004025 ORTHO05D004929 1.0e-16 89.4 57 73.7
Manes.13G083201 Manihot esculenta HOM05D004025 ORTHO05D004929 1.0e-16 89.4 59 71.2
CiPaw.03G122700 Carya illinoinensis HOM05D004025 ORTHO05D004929 1.4e-16 89.0 57 73.7
CANSAT01G1331 Cannabis sativa HOM05D004025 ORTHO05D004929 2.3e-16 88.2 57 73.7
TWI31G0593 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 2.3e-16 88.2 58 74.1
Manes.12G154400 Manihot esculenta HOM05D004025 ORTHO05D004929 3.0e-16 87.8 59 69.5
Aqoxy6G00339 Aquilegia oxysepala HOM05D004025 ORTHO05D004929 3.9e-16 87.4 56 73.2
MD17G1256600 Malus domestica HOM05D004025 ORTHO05D004929 3.9e-16 87.4 52 75.0
TWI75G0726 Tripterygium wilfordii HOM05D004025 ORTHO05D004929 5.1e-16 87.0 58 74.1
Gohir.A12G090600 Gossypium hirsutum HOM05D004025 ORTHO05D004929 8.8e-16 86.3 58 74.1
Gohir.D12G084000 Gossypium hirsutum HOM05D004025 ORTHO05D004929 8.8e-16 86.3 58 74.1
Gorai.008G094100 Gossypium raimondii HOM05D004025 ORTHO05D004929 8.8e-16 86.3 58 74.1
FvH4_1g24240 Fragaria vesca HOM05D004025 ORTHO05D004929 1.5e-15 85.5 59 71.2
FAN19G0688 Fragaria x ananassa HOM05D004025 ORTHO05D004929 1.5e-15 85.5 59 71.2
TAR625G0443 Trochodendron aralioides HOM05D004025 ORTHO05D004929 1.5e-15 85.5 57 73.7
CDE08G1435 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 1.9e-15 85.1 56 67.9
CsaV3_6G041660 Cucumis sativus L. HOM05D004025 ORTHO05D004929 2.5e-15 84.7 57 70.2
MD09G1261800 Malus domestica HOM05D004025 ORTHO05D004929 2.5e-15 84.7 52 73.1
Potri.007G109000 Populus trichocarpa HOM05D004025 ORTHO05D004929 2.5e-15 84.7 58 72.4
FAN26G1692 Fragaria x ananassa HOM05D004025 ORTHO05D004929 3.3e-15 84.3 59 69.5
ClCG01G015430 Citrullus lanatus HOM05D004025 ORTHO05D004929 5.7e-15 83.6 57 68.4
MELO3C008054.2 Cucumis melo HOM05D004025 ORTHO05D004929 5.7e-15 83.6 57 68.4
Potri.005G059000 Populus trichocarpa HOM05D004025 ORTHO05D004929 5.7e-15 83.6 58 70.7
GSVIVG01026496001 Vitis vinifera HOM05D004025 ORTHO05D004929 5.7e-15 83.6 56 75.0
Actinidia20083 Actinidia chinensis HOM05D004025 ORTHO05D004929 7.4e-15 83.2 58 74.1
FAN28G0438 Fragaria x ananassa HOM05D004025 ORTHO05D004929 7.4e-15 83.2 59 67.8
FAN23G0558 Fragaria x ananassa HOM05D004025 ORTHO05D004929 9.7e-15 82.8 59 69.5
FAN23G0951 Fragaria x ananassa HOM05D004025 ORTHO05D004929 9.7e-15 82.8 59 69.5
Sabra07G0089100 Salix brachista HOM05D004025 ORTHO05D004929 1.3e-14 82.4 58 69.0
COL.COLO4_35712 Corchorus olitorius HOM05D004025 ORTHO05D004929 1.7e-14 82.0 58 72.4
Dinv24344 Davidia involucrata HOM05D004025 ORTHO05D004929 2.2e-14 81.6 57 70.2
Ah.06g190860 Amaranthus hybridus HOM05D004025 ORTHO05D004929 2.8e-14 81.3 59 67.8
DCAR_014341 Daucus carota HOM05D004025 ORTHO05D004929 2.8e-14 81.3 56 66.1
QL06p028841 Quercus lobata HOM05D004025 ORTHO05D004929 2.8e-14 81.3 59 69.5
Sc09g0002360 Simmondsia chinensis HOM05D004025 ORTHO05D004929 2.8e-14 81.3 57 64.9
THA.LOC104800034 Tarenaya hassleriana HOM05D004025 ORTHO05D004929 2.8e-14 81.3 57 68.4
AT5G09350 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 3.7e-14 80.9 58 67.2
BcaB07g29718 Brassica carinata HOM05D004025 ORTHO05D004929 3.7e-14 80.9 58 69.0
Nn1g06239 Nelumbo nucifera HOM05D004025 ORTHO05D004929 3.7e-14 80.9 57 68.4
Thecc.01G130400 Theobroma cacao HOM05D004025 ORTHO05D004929 3.7e-14 80.9 58 70.7
HPP92_019399 Vanilla planifolia HOM05D004025 ORTHO05D004929 3.7e-14 80.9 59 67.8
EL10Ac4g09596 Beta vulgaris HOM05D004025 ORTHO05D004929 4.8e-14 80.5 58 67.2
HanXRQChr09g0258681 Helianthus annuus HOM05D004025 ORTHO05D004929 4.8e-14 80.5 56 64.3
Nn5g28584 Nelumbo nucifera HOM05D004025 ORTHO05D004929 4.8e-14 80.5 57 68.4
SHI11475 Sapria himalayana HOM05D004025 ORTHO05D004929 4.8e-14 80.5 57 66.7
Aa31LG1G17850 Aethionema arabicum HOM05D004025 ORTHO05D004929 6.3e-14 80.1 44 81.8
Thhalv10003553m.g Eutrema salsugineum HOM05D004025 ORTHO05D004929 6.3e-14 80.1 44 81.8
Carub.0006s0789 Capsella rubella HOM05D004025 ORTHO05D004929 1.1e-13 79.3 58 65.5
Hma1.2p1_0476F.1_g160915 Hydrangea macrophylla HOM05D004025 ORTHO05D004929 1.1e-13 79.3 58 70.7
AL8G41330 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 1.4e-13 79.0 44 77.3
AT5G64070 Arabidopsis thaliana HOM05D004025 ORTHO05D004929 1.4e-13 79.0 44 77.3
CARHR277980 Cardamine hirsuta HOM05D004025 ORTHO05D004929 1.4e-13 79.0 44 79.5
Eucgr.I00214 Eucalyptus grandis HOM05D004025 ORTHO05D004929 1.4e-13 79.0 58 65.5
Eucgr.L02369 Eucalyptus grandis HOM05D004025 ORTHO05D004929 1.4e-13 79.0 58 65.5
Sp2g27140 Schrenkiella parvula HOM05D004025 ORTHO05D004929 1.4e-13 79.0 44 79.5
Sed0015970 Sechium edule HOM05D004025 ORTHO05D004929 1.4e-13 79.0 57 63.2
Actinidia06630 Actinidia chinensis HOM05D004025 ORTHO05D004929 1.8e-13 78.6 58 70.7
CAN.G652.7 Capsicum annuum HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 66.7
CARHR204050 Cardamine hirsuta HOM05D004025 ORTHO05D004929 1.8e-13 78.6 58 65.5
AUR62006840 Chenopodium quinoa HOM05D004025 ORTHO05D004929 1.8e-13 78.6 60 66.7
Lsat_1_v5_gn_8_116820 Lactuca sativa HOM05D004025 ORTHO05D004929 1.8e-13 78.6 56 62.5
Lj4C845G3 Lonicera japonica HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 66.7
Nitab4.5_0002667g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 66.7
Nitab4.5_0005674g0010 Nicotiana tabacum HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 66.7
PSO541G3336 Papaver somniferum HOM05D004025 ORTHO05D004929 1.8e-13 78.6 58 69.0
PSO675G2111 Papaver somniferum HOM05D004025 ORTHO05D004929 1.8e-13 78.6 58 69.0
SMO134G0131 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 68.4
SMO182G0011 Selaginella moellendorffii HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 68.4
Solyc11g005910.2 Solanum lycopersicum HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 66.7
Sopen11g001850 Solanum pennellii HOM05D004025 ORTHO05D004929 1.8e-13 78.6 57 66.7
TAR381G0182 Trochodendron aralioides HOM05D004025 ORTHO05D004929 1.8e-13 78.6 56 62.5
BcaB02g09789 Brassica carinata HOM05D004025 ORTHO05D004929 2.4e-13 78.2 58 65.5
A06p30780 Brassica napus HOM05D004025 ORTHO05D004929 2.4e-13 78.2 58 65.5
C03p62200 Brassica napus HOM05D004025 ORTHO05D004929 2.4e-13 78.2 58 65.5
BraA06t26020Z Brassica rapa HOM05D004025 ORTHO05D004929 2.4e-13 78.2 58 65.5
Carub.0008s2485 Capsella rubella HOM05D004025 ORTHO05D004929 2.4e-13 78.2 44 77.3
PGSC0003DMG401028661 Solanum tuberosum HOM05D004025 ORTHO05D004929 3.1e-13 77.8 57 66.7
AL6G19740 Arabidopsis lyrata HOM05D004025 ORTHO05D004929 4.1e-13 77.4 58 63.8
BolC3t18483H Brassica oleracea HOM05D004025 ORTHO05D004929 4.1e-13 77.4 44 77.3
Hund21821 Selenicereus undatus HOM05D004025 ORTHO05D004929 4.1e-13 77.4 59 64.4
CSS0008777 Camellia sinensis var. sinensis HOM05D004025 ORTHO05D004929 5.3e-13 77.0 58 69.0
PGR079G0002 Punica granatum HOM05D004025 ORTHO05D004929 5.3e-13 77.0 58 65.5
PGR119G0653 Punica granatum HOM05D004025 ORTHO05D004929 5.3e-13 77.0 58 65.5
ATR0721G093 Amborella trichopoda HOM05D004025 ORTHO05D004929 6.9e-13 76.6 57 64.9
BcaC01g02663 Brassica carinata HOM05D004025 ORTHO05D004929 6.9e-13 76.6 58 63.8
BcaC03g18241 Brassica carinata HOM05D004025 ORTHO05D004929 6.9e-13 76.6 59 67.8
BolC2t12384H Brassica oleracea HOM05D004025 ORTHO05D004929 6.9e-13 76.6 59 67.8
CDE06G1971 Ceratophyllum demersum HOM05D004025 ORTHO05D004929 9.1e-13 76.3 53 62.3
Aa31LG3G17690 Aethionema arabicum HOM05D004025 ORTHO05D004929 1.2e-12 75.9 56 66.1
Peaxi162Scf00589g00320 Petunia axillaris HOM05D004025 ORTHO05D004929 1.2e-12 75.9 57 64.9
Cc07_g18300 Coffea canephora HOM05D004025 ORTHO05D004929 1.5e-12 75.5 61 65.6
Rhsim10G0135700 Rhododendron simsii HOM05D004025 ORTHO05D004929 1.5e-12 75.5 58 69.0
C02p63120 Brassica napus HOM05D004025 ORTHO05D004929 2.0e-12 75.1 59 66.1
Zm00001eb168670 Zea mays HOM05D004025 ORTHO05D004929 2.0e-12 75.1 59 59.3
Migut.L00888 Erythranthe guttata HOM05D004025 ORTHO05D004929 2.6e-12 74.7 59 62.7
vmacro12812 Vaccinium macrocarpon HOM05D004025 ORTHO05D004929 3.4e-12 74.3 58 67.2
A02p43140 Brassica napus HOM05D004025 ORTHO05D004929 4.5e-12 73.9 59 64.4
BraA02t09234Z Brassica rapa HOM05D004025 ORTHO05D004929 4.5e-12 73.9 59 64.4
MSTRG.2662 Avicennia marina HOM05D004025 ORTHO05D004929 5.9e-12 73.6 59 62.7
Lsat_1_v5_gn_5_42641 Lactuca sativa HOM05D004025 ORTHO05D004929 5.9e-12 73.6 56 60.7
SalBow1G5432 Salvia bowleyana HOM05D004025 ORTHO05D004929 5.9e-12 73.6 59 62.7
Oeu047692.2 Olea europaea HOM05D004025 ORTHO05D004929 1.0e-11 72.8 58 60.3
SGA_v2.0_scaffold132G34527 Striga asiatica HOM05D004025 ORTHO05D004929 1.3e-11 72.4 62 58.1
SEGI_16906 Sequoiadendron giganteum HOM05D004025 ORTHO05D004929 2.2e-11 71.6 57 63.2
unitig_52.g17244 Utricularia gibba HOM05D004025 ORTHO05D004929 2.9e-11 71.2 60 61.7
Mapoly0091s0020 Marchantia polymorpha HOM05D004025 ORTHO05D004929 6.5e-11 70.1 60 58.3
Pp3c6_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 1.1e-10 69.3 57 61.4
AagrBONN_evm.TU.Sc2ySwM_228.921 Anthoceros agrestis HOM05D004025 ORTHO05D004929 1.9e-10 68.6 61 60.7
Pp3c5_11330 Physcomitrium patens HOM05D004025 ORTHO05D004929 1.9e-10 68.6 57 59.6
AUR62000495 Chenopodium quinoa HOM05D004025 ORTHO05D004929 4.2e-10 67.4 47 70.2
MBI06_g29665_MAGBIO Magnolia biondii HOM05D004025 ORTHO05D004929 4.2e-10 67.4 64 57.8
Zm00001eb087390 Zea mays HOM05D004025 ORTHO05D004929 7.9e-09 63.2 59 50.8
CBR_g34503 Chara braunii HOM05D004025 ORTHO05D004929 1.8e-08 62.0 65 55.4


User provided reference genes

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