Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G7020 Trifolium pratense HOM05D003489 ORTHO05D044814 9.2e-22 105.9 51 100.0
Ca_30115_v3 Cicer arietinum L. HOM05D003489 ORTHO05D004109 1.7e-20 101.7 51 92.2
Medtr8g442750 Medicago truncatula HOM05D003489 ORTHO05D004109 6.6e-20 99.8 51 92.2
Psat4g137680 Pisum sativum HOM05D003489 ORTHO05D004109 1.5e-19 98.6 51 88.2
TPR.G9418 Trifolium pratense HOM05D003489 ORTHO05D004109 1.5e-19 98.6 51 88.2
Lj3g0015370 Lotus japonicus HOM05D003489 ORTHO05D004109 3.3e-19 97.4 51 86.3
Glyma.15G213100 Glycine max HOM05D003489 ORTHO05D004109 5.6e-19 96.7 51 88.2
Phvul.011G177250 Phaseolus vulgaris HOM05D003489 ORTHO05D004109 2.8e-18 94.4 51 86.3
VMungo1127G1841 Vigna mungo HOM05D003489 ORTHO05D004109 3.6e-18 94.0 51 86.3
Ciclev10005524m.g Citrus clementina HOM05D003489 ORTHO05D004109 4.7e-18 93.6 51 82.4
MD10G1209100 Malus domestica HOM05D003489 ORTHO05D004109 1.1e-17 92.4 51 82.4
Nitab4.5_0006109g0040 Nicotiana tabacum HOM05D003489 ORTHO05D004109 2.4e-17 91.3 51 80.4
TWI38G2359 Tripterygium wilfordii HOM05D003489 ORTHO05D004109 3.1e-17 90.9 51 80.4
GSVIVG01036762001 Vitis vinifera HOM05D003489 ORTHO05D004109 3.1e-17 90.9 51 80.4
FvH4_3g14740 Fragaria vesca HOM05D003489 ORTHO05D004109 4.0e-17 90.5 51 80.4
Nitab4.5_0000029g0300 Nicotiana tabacum HOM05D003489 ORTHO05D004109 4.0e-17 90.5 51 80.4
Nitab4.5_0000029g0290 Nicotiana tabacum HOM05D003489 ORTHO05D004109 5.2e-17 90.1 51 78.4
CSS0006688 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 6.8e-17 89.7 51 76.5
CSS0044390 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 6.8e-17 89.7 51 76.5
Sc18g0003310 Simmondsia chinensis HOM05D003489 ORTHO05D004109 6.8e-17 89.7 51 80.4
Sabra06G0018700 Salix brachista HOM05D003489 ORTHO05D004109 1.2e-16 89.0 51 78.4
COL.COLO4_19751 Corchorus olitorius HOM05D003489 ORTHO05D004109 1.5e-16 88.6 51 74.5
FAN16G2962 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.5e-16 88.6 51 78.4
FAN21G0618 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.5e-16 88.6 51 78.4
FAN25G2342 Fragaria x ananassa HOM05D003489 ORTHO05D004109 1.5e-16 88.6 51 78.4
Ah.10g033720 Amaranthus hybridus HOM05D003489 ORTHO05D004109 2.0e-16 88.2 51 76.5
Glyma.08G237400 Glycine max HOM05D003489 ORTHO05D004109 2.6e-16 87.8 51 82.4
Manes.14G009200 Manihot esculenta HOM05D003489 ORTHO05D004109 2.6e-16 87.8 51 78.4
Carub.0003s1216 Capsella rubella HOM05D003489 ORTHO05D004109 3.4e-16 87.4 51 76.5
Cfa019401 Carpinus fangiana HOM05D003489 ORTHO05D004109 3.4e-16 87.4 51 76.5
Haze_07801 Corylus avellana HOM05D003489 ORTHO05D004109 3.4e-16 87.4 51 78.4
Potri.006G025400 Populus trichocarpa HOM05D003489 ORTHO05D004109 3.4e-16 87.4 51 78.4
Prupe.4G132600 Prunus persica HOM05D003489 ORTHO05D004109 3.4e-16 87.4 51 76.5
QL04p087224 Quercus lobata HOM05D003489 ORTHO05D004109 3.4e-16 87.4 50 80.0
Eucgr.F04461 Eucalyptus grandis HOM05D003489 ORTHO05D004109 4.4e-16 87.0 51 78.4
EL10Ac2g03234 Beta vulgaris HOM05D003489 ORTHO05D004109 5.8e-16 86.7 51 76.5
CAN.G943.55 Capsicum annuum HOM05D003489 ORTHO05D004109 7.6e-16 86.3 51 76.5
Sopen07g034780 Solanum pennellii HOM05D003489 ORTHO05D004109 7.6e-16 86.3 51 76.5
PGSC0003DMG402022117 Solanum tuberosum HOM05D003489 ORTHO05D004109 7.6e-16 86.3 51 76.5
DCAR_019918 Daucus carota HOM05D003489 ORTHO05D004109 9.9e-16 85.9 51 76.5
RcHm_v2.0_Chr5g0024271 Rosa chinensis HOM05D003489 ORTHO05D004109 9.9e-16 85.9 51 74.5
Sed0021670 Sechium edule HOM05D003489 ORTHO05D004109 9.9e-16 85.9 51 74.5
TAR626G0906 Trochodendron aralioides HOM05D003489 ORTHO05D004109 9.9e-16 85.9 51 72.5
CSS0010976 Camellia sinensis var. sinensis HOM05D003489 ORTHO05D004109 1.3e-15 85.5 51 78.4
Nn7g38230 Nelumbo nucifera HOM05D003489 ORTHO05D004109 1.7e-15 85.1 51 74.5
vmacro09770 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 1.7e-15 85.1 51 74.5
AL3G24480 Arabidopsis lyrata HOM05D003489 ORTHO05D004109 2.2e-15 84.7 51 72.5
FAN11G1209 Fragaria x ananassa HOM05D003489 ORTHO05D004109 2.2e-15 84.7 51 76.5
Solyc07g066630.4 Solanum lycopersicum HOM05D003489 ORTHO05D004109 2.2e-15 84.7 51 74.5
AT3G12800 Arabidopsis thaliana HOM05D003489 ORTHO05D004109 2.9e-15 84.3 51 72.5
AUR62040866 Chenopodium quinoa HOM05D003489 ORTHO05D004109 2.9e-15 84.3 50 70.0
Duzib268G0350 Durio zibethinus HOM05D003489 ORTHO05D004109 3.8e-15 84.0 51 72.5
Sed0005392 Sechium edule HOM05D003489 ORTHO05D004109 3.8e-15 84.0 51 72.5
Cc05_g16430 Coffea canephora HOM05D003489 ORTHO05D004109 4.9e-15 83.6 51 72.5
Lsat_1_v5_gn_3_107180 Lactuca sativa HOM05D003489 ORTHO05D004109 4.9e-15 83.6 50 72.0
Lj2A13T24 Lonicera japonica HOM05D003489 ORTHO05D004109 4.9e-15 83.6 51 72.5
Manes.03G069001 Manihot esculenta HOM05D003489 ORTHO05D004109 4.9e-15 83.6 51 68.6
Rhsim04G0003000 Rhododendron simsii HOM05D003489 ORTHO05D004109 4.9e-15 83.6 51 74.5
CANSAT80G0618 Cannabis sativa HOM05D003489 ORTHO05D004109 6.4e-15 83.2 51 76.5
AUR62032089 Chenopodium quinoa HOM05D003489 ORTHO05D004109 6.4e-15 83.2 51 70.6
ClCG09G022700 Citrullus lanatus HOM05D003489 ORTHO05D004109 6.4e-15 83.2 51 72.5
MELO3C012608.2 Cucumis melo HOM05D003489 ORTHO05D004109 6.4e-15 83.2 51 70.6
Dinv09060 Davidia involucrata HOM05D003489 ORTHO05D004109 6.4e-15 83.2 51 72.5
PGR031G2340 Punica granatum HOM05D003489 ORTHO05D004109 6.4e-15 83.2 52 75.0
Sp3g10955 Schrenkiella parvula HOM05D003489 ORTHO05D004109 6.4e-15 83.2 51 72.5
Sp3g10960 Schrenkiella parvula HOM05D003489 ORTHO05D004109 8.4e-15 82.8 51 72.5
CiPaw.11G061000 Carya illinoinensis HOM05D003489 ORTHO05D004109 1.1e-14 82.4 51 70.6
Lsat_1_v5_gn_7_75601 Lactuca sativa HOM05D003489 ORTHO05D004109 1.1e-14 82.4 51 70.6
RcHm_v2.0_Chr5g0020441 Rosa chinensis HOM05D003489 ORTHO05D004109 1.1e-14 82.4 51 68.6
BcaB04g18721 Brassica carinata HOM05D003489 ORTHO05D004109 1.4e-14 82.0 51 70.6
BcaC01g04035 Brassica carinata HOM05D003489 ORTHO05D004109 1.4e-14 82.0 51 70.6
BolC3t16863H Brassica oleracea HOM05D003489 ORTHO05D004109 1.4e-14 82.0 51 70.6
BraA03t12936Z Brassica rapa HOM05D003489 ORTHO05D004109 1.4e-14 82.0 51 70.6
CsaV3_7G022900 Cucumis sativus L. HOM05D003489 ORTHO05D004109 1.4e-14 82.0 51 70.6
Lalb_Chr19g0133211 Lupinus albus HOM05D003489 ORTHO05D004109 1.4e-14 82.0 51 70.6
Aa31LG8G80 Aethionema arabicum HOM05D003489 ORTHO05D004109 1.9e-14 81.6 51 74.5
Cfa000694 Carpinus fangiana HOM05D003489 ORTHO05D004109 1.9e-14 81.6 51 70.6
Haze_06096 Corylus avellana HOM05D003489 ORTHO05D044814 1.9e-14 81.6 51 72.5
Oeu019723.1 Olea europaea HOM05D003489 ORTHO05D004109 1.9e-14 81.6 51 74.5
Prupe.4G113900 Prunus persica HOM05D003489 ORTHO05D004109 1.9e-14 81.6 51 66.7
Sabra12G0094800 Salix brachista HOM05D003489 ORTHO05D004109 1.9e-14 81.6 51 68.6
TAR624G0253 Trochodendron aralioides HOM05D003489 ORTHO05D004109 1.9e-14 81.6 51 70.6
THA.LOC104826329 Tarenaya hassleriana HOM05D003489 ORTHO05D004109 2.4e-14 81.3 53 71.7
Oeu034981.1 Olea europaea HOM05D003489 ORTHO05D004109 3.2e-14 80.9 50 72.0
HanXRQChr12g0381551 Helianthus annuus HOM05D003489 ORTHO05D004109 4.2e-14 80.5 50 66.0
Potri.012G125900 Populus trichocarpa HOM05D003489 ORTHO05D004109 4.2e-14 80.5 51 64.7
Aqoxy1G01416 Aquilegia oxysepala HOM05D003489 ORTHO05D004109 5.4e-14 80.1 51 68.6
Aqoxy72s003 Aquilegia oxysepala HOM05D003489 ORTHO05D004109 5.4e-14 80.1 51 68.6
Migut.M01523 Erythranthe guttata HOM05D003489 ORTHO05D004109 5.4e-14 80.1 51 70.6
FAN16G1927 Fragaria x ananassa HOM05D003489 ORTHO05D004109 5.4e-14 80.1 51 68.6
FAN21G3976 Fragaria x ananassa HOM05D003489 ORTHO05D004109 5.4e-14 80.1 51 68.6
FAN25G0305 Fragaria x ananassa HOM05D003489 ORTHO05D004109 5.4e-14 80.1 51 68.6
ATR0697G295 Amborella trichopoda HOM05D003489 ORTHO05D004109 7.1e-14 79.7 51 72.5
ECA240G1189 Erigeron canadensis HOM05D003489 ORTHO05D004109 7.1e-14 79.7 51 66.7
GSVIVG01012113001 Vitis vinifera HOM05D003489 ORTHO05D004109 7.1e-14 79.7 51 72.5
Atru.chr10.457 Acer truncatum HOM05D003489 ORTHO05D004109 9.2e-14 79.3 51 70.6
arahy.Tifrunner.gnm1.ann1.JYF968 Arachis hypogaea HOM05D003489 ORTHO05D004109 9.2e-14 79.3 41 90.2
arahy.Tifrunner.gnm1.ann1.T86MTP Arachis hypogaea HOM05D003489 ORTHO05D004109 9.2e-14 79.3 41 90.2
ECA246G5026 Erigeron canadensis HOM05D003489 ORTHO05D004109 9.2e-14 79.3 51 64.7
Gohir.D08G252400 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.6e-13 78.6 51 68.6
Gorai.004G269100 Gossypium raimondii HOM05D003489 ORTHO05D004109 1.6e-13 78.6 51 68.6
MBI18_g11461_MAGBIO Magnolia biondii HOM05D003489 ORTHO05D004109 1.6e-13 78.6 51 68.6
Ciclev10016100m.g Citrus clementina HOM05D003489 ORTHO05D004109 2.1e-13 78.2 51 64.7
SGA_v2.0_scaffold47G17759 Striga asiatica HOM05D003489 ORTHO05D004109 2.1e-13 78.2 51 68.6
Gohir.A08G232000 Gossypium hirsutum HOM05D003489 ORTHO05D004109 2.7e-13 77.8 51 68.6
CiPaw.10G063600 Carya illinoinensis HOM05D003489 ORTHO05D004109 3.5e-13 77.4 51 66.7
CDE06G1011 Ceratophyllum demersum HOM05D003489 ORTHO05D004109 3.5e-13 77.4 51 64.7
Thhalv10021233m.g Eutrema salsugineum HOM05D003489 ORTHO05D004109 3.5e-13 77.4 51 66.7
FvH4_3g12490 Fragaria vesca HOM05D003489 ORTHO05D004109 3.5e-13 77.4 51 66.7
DCAR_007785 Daucus carota HOM05D032355 ORTHO05D004109 4.6e-13 77.0 51 66.7
MD05G1249900 Malus domestica HOM05D003489 ORTHO05D004109 4.6e-13 77.0 51 64.7
HPP92_026361 Vanilla planifolia HOM05D003489 ORTHO05D004109 4.6e-13 77.0 51 68.6
HanXRQChr03g0078181 Helianthus annuus HOM05D003489 ORTHO05D004109 6.0e-13 76.6 51 66.7
Peaxi162Scf00452g00336 Petunia axillaris HOM05D003489 ORTHO05D004109 6.0e-13 76.6 44 75.0
Hma1.2p1_0151F.1_g067260 Hydrangea macrophylla HOM05D003489 ORTHO05D004109 7.8e-13 76.3 42 83.3
Os04g0614000 Oryza sativa ssp. japonica HOM05D003489 ORTHO05D004109 7.8e-13 76.3 51 62.7
Migut.H01667 Erythranthe guttata HOM05D003489 ORTHO05D004109 1.0e-12 75.9 51 66.7
SalBow8G4095 Salvia bowleyana HOM05D003489 ORTHO05D004109 1.0e-12 75.9 51 68.6
HPP92_016428 Vanilla planifolia HOM05D003489 ORTHO05D004109 1.0e-12 75.9 51 66.7
Actinidia22416 Actinidia chinensis HOM05D003489 ORTHO05D004109 1.7e-12 75.1 51 68.6
CARHR087330 Cardamine hirsuta HOM05D003489 ORTHO05D004109 5.1e-12 73.6 42 76.2
QL11p013743 Quercus lobata HOM05D003489 ORTHO05D004109 8.7e-12 72.8 50 68.0
Zm00001eb430820 Zea mays HOM05D003489 ORTHO05D004109 8.7e-12 72.8 51 62.7
Cpa.g.sc32.29 Carica papaya HOM05D003489 ORTHO05D004109 1.1e-11 72.4 42 73.8
Eucgr.D00036 Eucalyptus grandis HOM05D003489 ORTHO05D004109 1.5e-11 72.0 51 66.7
A03p37810 Brassica napus HOM05D003489 ORTHO05D004109 1.9e-11 71.6 43 69.8
C03p45870 Brassica napus HOM05D001395 ORTHO05D004109 1.9e-11 71.6 43 69.8
PGR004G2417 Punica granatum HOM05D003489 ORTHO05D004109 3.3e-11 70.9 51 56.9
MSTRG.16098 Avicennia marina HOM05D003489 ORTHO05D004109 4.3e-11 70.5 51 66.7
Cpa.g.sc30.144 Carica papaya HOM05D003489 ORTHO05D004109 7.3e-11 69.7 49 61.2
Gohir.D12G046300 Gossypium hirsutum HOM05D003489 ORTHO05D004109 9.6e-11 69.3 51 64.7
Gorai.008G049000 Gossypium raimondii HOM05D003489 ORTHO05D004109 9.6e-11 69.3 51 64.7
COL.COLO4_17645 Corchorus olitorius HOM05D003489 ORTHO05D004109 1.3e-10 68.9 51 62.7
Duzib132G1003 Durio zibethinus HOM05D003489 ORTHO05D004109 1.3e-10 68.9 51 62.7
Gohir.A12G047600 Gossypium hirsutum HOM05D003489 ORTHO05D004109 1.3e-10 68.9 51 64.7
PSO675G9327 Papaver somniferum HOM05D003489 ORTHO05D004109 2.8e-10 67.8 41 70.7
BcaB06g25510 Brassica carinata HOM05D003489 ORTHO05D004109 3.6e-10 67.4 42 66.7
PSO541G1044 Papaver somniferum HOM05D003489 ORTHO05D004109 3.6e-10 67.4 52 63.5
Thecc.02G007100 Theobroma cacao HOM05D003489 ORTHO05D004109 3.6e-10 67.4 51 62.7
Duzib248G1596 Durio zibethinus HOM05D003489 ORTHO05D004109 8.1e-10 66.2 51 60.8
PSO675G1648 Papaver somniferum HOM05D003489 ORTHO05D004109 1.1e-09 65.9 40 70.0
PSO675G6571 Papaver somniferum HOM05D003489 ORTHO05D004109 1.1e-09 65.9 40 70.0
A05p36670 Brassica napus HOM05D001395 ORTHO05D004109 3.1e-09 64.3 37 73.0
BraA05t22470Z Brassica rapa HOM05D001395 ORTHO05D004109 3.1e-09 64.3 37 73.0
SEGI_16258 Sequoiadendron giganteum HOM05D003489 ORTHO05D004109 6.9e-09 63.2 51 54.9
Zm00001eb070900 Zea mays HOM05D003489 ORTHO05D004109 6.9e-09 63.2 37 64.9
Lj2A345T27 Lonicera japonica HOM05D003489 ORTHO05D004109 9.0e-09 62.8 51 58.8
CANSAT80G1187 Cannabis sativa HOM05D003489 ORTHO05D004109 1.5e-08 62.0 52 57.7
C05p55120 Brassica napus HOM05D001395 ORTHO05D004109 2.0e-08 61.6 37 70.3
BolC5t34180H Brassica oleracea HOM05D001395 ORTHO05D004109 2.0e-08 61.6 37 70.3
SEGI_41285 Sequoiadendron giganteum HOM05D003489 ORTHO05D004109 2.6e-08 61.2 51 52.9
CANSAT80G0498 Cannabis sativa HOM05D003489 ORTHO05D004109 7.6e-08 59.7 51 54.9
Pp3c20_21940 Physcomitrium patens HOM05D003489 ORTHO05D004109 8.4e-07 56.2 51 52.9
SMO116G0107 Selaginella moellendorffii HOM05D003489 ORTHO05D004109 1.1e-06 55.8 39 59.0
PSO675G0014 Papaver somniferum HOM05D003489 ORTHO05D004109 1.4e-06 55.5 48 54.2
Pp3c23_13630 Physcomitrium patens HOM05D003489 ORTHO05D004109 7.1e-06 53.1 51 47.1
vmacro23254 Vaccinium macrocarpon HOM05D003489 ORTHO05D004109 7.1e-06 53.1 24 87.5


User provided reference genes

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