Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G701 Trifolium pratense HOM05D003460 ORTHO05D030575 1.3e-73 279.6 142 100.0
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 8.7e-70 266.9 138 99.3
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 2.4e-59 232.3 140 86.4
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 3.2e-56 221.9 138 84.1
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 4.5e-50 201.4 139 77.0
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 3.8e-49 198.4 135 77.8
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.6e-47 193.0 138 76.1
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 2.1e-47 192.6 135 75.6
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 1.0e-46 190.3 135 73.3
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 1.1e-45 186.8 135 71.9
TPR.G8692 Trifolium pratense HOM05D003460 ORTHO05D004277 1.1e-45 186.8 135 73.3
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 7.4e-45 184.1 135 72.6
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 2.2e-44 182.6 135 72.6
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 2.4e-43 179.1 135 71.9
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 2.4e-43 179.1 135 69.6
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 6.9e-43 177.6 135 72.6
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 1.5e-42 176.4 137 69.3
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 5.9e-42 174.5 134 68.7
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 5.9e-42 174.5 134 68.7
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 1.3e-41 173.3 137 67.9
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 5.0e-41 171.4 135 65.9
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 2.1e-39 166.0 134 63.4
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 6.1e-39 164.5 135 70.4
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.0e-38 163.7 139 63.3
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 5.2e-38 161.4 134 62.7
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 7.4e-37 157.5 139 59.7
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 7.4e-37 157.5 134 61.9
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 7.4e-37 157.5 130 62.3
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 1.7e-36 156.4 134 60.4
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 1.7e-36 156.4 134 61.2
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 6.3e-36 154.5 139 58.3
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 8.2e-36 154.1 134 61.9
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.1e-35 153.7 135 67.4
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 2.4e-35 152.5 143 58.0
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 7.0e-35 151.0 134 61.2
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 7.0e-35 151.0 139 58.3
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 9.1e-35 150.6 139 57.6
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 9.1e-35 150.6 139 57.6
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.9e-34 147.9 139 56.8
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 5.9e-34 147.9 139 56.8
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 5.9e-34 147.9 135 57.0
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 5.9e-34 147.9 136 61.0
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 5.9e-34 147.9 134 62.7
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 5.9e-34 147.9 134 56.7
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 1.0e-33 147.1 134 60.4
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 1.3e-33 146.7 134 59.7
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 2.2e-33 146.0 139 56.8
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 2.2e-33 146.0 139 56.8
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 3.8e-33 145.2 139 56.1
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 6.5e-33 144.4 140 55.0
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 8.5e-33 144.1 134 59.0
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 8.5e-33 144.1 139 54.0
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 8.5e-33 144.1 140 57.1
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.1e-32 143.7 137 55.5
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 1.1e-32 143.7 134 56.7
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 1.5e-32 143.3 135 55.6
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 1.5e-32 143.3 135 56.3
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 1.9e-32 142.9 139 54.7
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 1.9e-32 142.9 139 54.7
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 4.2e-32 141.7 136 57.4
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 7.2e-32 141.0 135 56.3
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 1.2e-31 140.2 134 57.5
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.7e-31 139.0 134 60.4
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 3.6e-31 138.7 139 52.5
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.6e-31 138.7 136 55.1
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 3.6e-31 138.7 140 55.0
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 4.7e-31 138.3 134 54.5
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 6.1e-31 137.9 136 55.9
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 6.1e-31 137.9 134 60.4
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 8.0e-31 137.5 136 58.1
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 1.8e-30 136.3 134 53.7
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 1.8e-30 136.3 134 58.2
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 1.8e-30 136.3 139 52.5
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 1.8e-30 136.3 134 56.7
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 2.3e-30 136.0 136 55.1
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 3.0e-30 135.6 134 55.2
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 4.0e-30 135.2 136 53.7
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 4.0e-30 135.2 134 59.0
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 5.2e-30 134.8 135 58.5
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 6.7e-30 134.4 142 55.6
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 1.2e-29 133.7 138 52.9
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 1.2e-29 133.7 136 54.4
THA.LOC104827725 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 1.5e-29 133.3 140 50.0
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 2.0e-29 132.9 136 52.9
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 2.6e-29 132.5 135 58.5
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 2.6e-29 132.5 136 55.9
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 2.6e-29 132.5 136 55.9
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 2.6e-29 132.5 136 55.9
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 2.6e-29 132.5 136 55.9
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 2.6e-29 132.5 136 55.9
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 2.6e-29 132.5 134 59.0
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 2.6e-29 132.5 136 58.8
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.6e-29 132.5 139 49.6
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 3.3e-29 132.1 136 52.2
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 4.4e-29 131.7 134 55.2
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 4.4e-29 131.7 136 55.9
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 4.4e-29 131.7 136 55.9
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 4.4e-29 131.7 111 68.5
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 4.4e-29 131.7 135 50.4
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 7.5e-29 131.0 136 55.9
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 1.3e-28 130.2 136 54.4
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.7e-28 129.8 146 50.0
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 2.2e-28 129.4 135 54.1
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 2.8e-28 129.0 134 56.7
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.8e-28 129.0 134 56.7
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 2.8e-28 129.0 136 53.7
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.8e-28 129.0 138 49.3
Gohir.A11G088900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.7e-28 128.6 134 56.7
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 4.8e-28 128.3 132 56.1
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 8.2e-28 127.5 139 52.5
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 4.1e-27 125.2 139 48.9
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 7.0e-27 124.4 135 55.6
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 7.0e-27 124.4 135 51.9
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 9.1e-27 124.0 135 51.9
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 1.2e-26 123.6 136 52.2
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 1.2e-26 123.6 136 52.9
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 2.0e-26 122.9 136 52.9
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 2.7e-26 122.5 142 51.4
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 3.5e-26 122.1 136 51.5
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 4.5e-26 121.7 132 52.3
Atru.chr5.495 Acer truncatum HOM05D003460 ORTHO05D004277 5.9e-26 121.3 98 61.2
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 5.9e-26 121.3 140 50.0
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 7.7e-26 120.9 138 51.4
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 2.2e-25 119.4 140 50.7
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 2.9e-25 119.0 132 50.8
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 3.8e-25 118.6 134 52.2
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 6.5e-25 117.9 130 54.6
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 1.1e-24 117.1 133 45.9
Os07g0648300 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 2.5e-24 115.9 133 45.1
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 4.2e-24 115.2 135 48.9
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 9.4e-24 114.0 146 46.6
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 4.7e-23 111.7 133 44.4
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 1.0e-22 110.5 142 45.8
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.8e-22 109.8 138 47.8
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 8.8e-22 107.5 144 48.6
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 2.0e-21 106.3 132 48.5
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 1.3e-20 103.6 137 46.7
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.3e-20 103.6 138 47.1
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 3.7e-20 102.1 135 48.9
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 4.1e-19 98.6 131 48.9
Os10g0550100 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 1.2e-18 97.1 132 43.2
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 1.3e-17 93.6 130 45.4
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.8e-17 92.0 135 45.2
Psat4g195400 Pisum sativum HOM05D000929 ORTHO05D002623 5.0e-17 91.7 63 66.7
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.1e-16 90.5 134 41.8
VMungo0540G1705 Vigna mungo HOM05D003460 ORTHO05D030575 1.9e-16 89.7 83 61.4
Dinv43815 Davidia involucrata HOM05D003460 ORTHO05D004277 2.1e-15 86.3 139 41.7
Psat0ss3759g0200 Pisum sativum HOM05D003460 ORTHO05D007199 2.8e-15 85.9 72 66.7
SHI13446 Sapria himalayana HOM05D003460 ORTHO05D030575 1.2e-13 80.5 118 44.9
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 1.7e-12 76.6 149 36.9
Psat3g174760 Pisum sativum HOM05D000902 ORTHO05D000832 2.8e-12 75.9 52 71.2
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 1.8e-11 73.2 112 46.4
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 3.1e-11 72.4 42 78.6
HPP92_028274 Vanilla planifolia HOM05D003460 ORTHO05D030575 4.7e-07 58.5 67 46.3


User provided reference genes

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