Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6996 Trifolium pratense HOM05D007779 ORTHO05D009863 3.3e-242 841.3 423 100.0
Medtr7g115440 Medicago truncatula HOM05D007779 ORTHO05D009863 3.2e-213 745.0 394 89.3
Psat0s3161g0280 Pisum sativum HOM05D007779 ORTHO05D009863 9.5e-213 743.4 399 88.2
Ca_09436_v3 Cicer arietinum L. HOM05D007779 ORTHO05D009863 2.3e-206 722.2 394 85.5
Lj1g0005336 Lotus japonicus HOM05D007779 ORTHO05D009863 4.9e-193 677.9 391 81.3
Glyma.19G246800 Glycine max HOM05D007779 ORTHO05D009863 3.6e-188 661.8 395 77.2
Phvul.006G104000 Phaseolus vulgaris HOM05D007779 ORTHO05D009863 1.2e-183 646.7 391 75.4
VMungo0540G1456 Vigna mungo HOM05D007779 ORTHO05D009863 7.8e-183 644.0 391 75.4
arahy.Tifrunner.gnm1.ann1.DL8VF6 Arachis hypogaea HOM05D007779 ORTHO05D009863 5.2e-179 631.3 391 76.2
arahy.Tifrunner.gnm1.ann1.C2UZEY Arachis hypogaea HOM05D007779 ORTHO05D009863 8.9e-179 630.6 391 76.2
Cfa006387 Carpinus fangiana HOM05D007779 ORTHO05D009863 9.3e-152 540.8 398 64.6
Haze_04390 Corylus avellana HOM05D007779 ORTHO05D009863 8.7e-150 534.3 392 65.1
QL03p029097 Quercus lobata HOM05D007779 ORTHO05D009863 4.5e-146 521.9 394 64.0
CiPaw.07G070500 Carya illinoinensis HOM05D007779 ORTHO05D009863 2.9e-145 519.2 392 62.0
Thecc.05G277100 Theobroma cacao HOM05D007779 ORTHO05D009863 1.1e-125 454.1 393 56.5
CsaV3_2G003840 Cucumis sativus L. HOM05D007779 ORTHO05D009863 1.7e-124 450.3 402 55.0
ClCG02G016930 Citrullus lanatus HOM05D007779 ORTHO05D009863 4.8e-124 448.7 393 54.7
Cpa.g.sc162.10 Carica papaya HOM05D007779 ORTHO05D009863 1.1e-123 447.6 396 56.6
FvH4_6g02440 Fragaria vesca HOM05D007779 ORTHO05D009863 5.3e-123 445.3 401 54.6
FAN02G2389 Fragaria x ananassa HOM05D007779 ORTHO05D009863 1.5e-122 443.7 402 55.0
FAN09G2319 Fragaria x ananassa HOM05D007779 ORTHO05D009863 4.5e-122 442.2 402 54.7
MELO3C004412.2 Cucumis melo HOM05D007779 ORTHO05D009863 2.2e-121 439.9 393 54.2
FAN14G0926 Fragaria x ananassa HOM05D007779 ORTHO05D009863 2.2e-121 439.9 402 54.2
FAN14G4661 Fragaria x ananassa HOM05D007779 ORTHO05D009863 2.2e-121 439.9 402 54.2
Atru.chr2.884 Acer truncatum HOM05D007779 ORTHO05D009863 3.8e-121 439.1 398 55.0
Duzib177G0763 Durio zibethinus HOM05D007779 ORTHO05D009863 1.4e-120 437.2 399 53.6
FAN05G5524 Fragaria x ananassa HOM05D007779 ORTHO05D009863 1.2e-119 434.1 402 53.7
RcHm_v2.0_Chr3g0450231 Rosa chinensis HOM05D007779 ORTHO05D009863 2.1e-119 433.3 401 54.1
FAN05G4719 Fragaria x ananassa HOM05D007779 ORTHO05D009863 3.6e-119 432.6 402 53.5
TWI56G0837 Tripterygium wilfordii HOM05D007779 ORTHO05D009863 3.9e-118 429.1 396 54.8
Sed0024421 Sechium edule HOM05D007779 ORTHO05D009863 6.7e-118 428.3 400 51.8
Prupe.6G347200 Prunus persica HOM05D007779 ORTHO05D009863 4.8e-116 422.2 392 53.1
Ciclev10019572m.g Citrus clementina HOM05D007779 ORTHO05D009863 1.4e-115 420.6 397 54.4
Potri.019G013900 Populus trichocarpa HOM05D007779 ORTHO05D009863 2.6e-114 416.4 394 54.8
Gohir.D08G234100 Gossypium hirsutum HOM05D007779 ORTHO05D009863 3.5e-114 416.0 392 52.3
Gorai.004G248800 Gossypium raimondii HOM05D007779 ORTHO05D009863 3.5e-114 416.0 392 52.3
Gohir.A08G217100 Gossypium hirsutum HOM05D007779 ORTHO05D009863 1.3e-113 414.1 392 52.0
COL.COLO4_15414 Corchorus olitorius HOM05D007779 ORTHO05D009863 8.8e-110 401.4 401 50.4
Sabra19G0016500 Salix brachista HOM05D007779 ORTHO05D009863 1.2e-109 401.0 392 52.8
MD12G1244700 Malus domestica HOM05D007779 ORTHO05D009863 2.0e-109 400.2 394 50.8
Sabra19G0026600 Salix brachista HOM05D007779 ORTHO05D009863 3.7e-108 396.0 392 52.6
Glyma.03G249300 Glycine max HOM05D007779 ORTHO05D009863 2.5e-104 383.3 236 75.4
Sed0018172 Sechium edule HOM05D007779 ORTHO05D009863 3.2e-104 382.9 395 48.6
THA.LOC104805831 Tarenaya hassleriana HOM05D007779 ORTHO05D009863 5.5e-104 382.1 401 50.9
CARHR209310 Cardamine hirsuta HOM05D007779 ORTHO05D009863 1.2e-93 347.8 394 46.2
Sp6g38780 Schrenkiella parvula HOM05D007779 ORTHO05D009863 3.4e-93 346.3 400 45.5
Thhalv10013722m.g Eutrema salsugineum HOM05D007779 ORTHO05D009863 4.4e-93 345.9 394 46.2
AT5G03970 Arabidopsis thaliana HOM05D007779 ORTHO05D009863 7.5e-93 345.1 393 45.8
Carub.0006s0291 Capsella rubella HOM05D007779 ORTHO05D009863 1.2e-90 337.8 393 45.5
BcaB05g21790 Brassica carinata HOM05D007779 ORTHO05D009863 7.8e-90 335.1 401 45.4
BcaC06g32099 Brassica carinata HOM05D007779 ORTHO05D009863 2.9e-89 333.2 399 44.1
C09p72880 Brassica napus HOM05D007779 ORTHO05D009863 3.3e-88 329.7 399 43.9
BolC9t60024H Brassica oleracea HOM05D007779 ORTHO05D009863 3.3e-88 329.7 399 43.9
A10p32150 Brassica napus HOM05D007779 ORTHO05D009863 2.1e-87 327.0 399 43.4
BraA10t45258Z Brassica rapa HOM05D007779 ORTHO05D009863 2.1e-87 327.0 399 43.4
Aa31LG1G21350 Aethionema arabicum HOM05D007779 ORTHO05D009863 2.0e-82 310.5 400 41.5
RcHm_v2.0_Chr3g0450221 Rosa chinensis HOM05D007779 ORTHO05D009863 3.0e-81 306.6 309 51.1
Duzib106G0954 Durio zibethinus HOM05D007779 ORTHO05D009863 1.7e-73 280.8 282 52.1
AL6G13560 Arabidopsis lyrata HOM05D007779 ORTHO05D009863 6.0e-66 255.8 265 47.9
C09p72900 Brassica napus HOM05D007779 ORTHO05D009863 1.1e-62 245.0 304 43.1
BolC9t60025H Brassica oleracea HOM05D007779 ORTHO05D009863 1.1e-62 245.0 304 43.1
Glyma.03G249350 Glycine max HOM05D007779 ORTHO05D009863 1.1e-56 224.9 139 73.4
A09p54400 Brassica napus HOM05D007779 ORTHO05D009863 2.5e-48 197.2 311 36.7
BraA09t40853Z Brassica rapa HOM05D007779 ORTHO05D009863 1.3e-47 194.9 311 37.0
Lalb_Chr04g0262171 Lupinus albus HOM05D007779 ORTHO05D009863 2.1e-39 167.5 125 64.8
BcaC07g42760 Brassica carinata HOM05D007779 ORTHO05D009863 1.1e-35 155.2 345 31.9
Oeu016027.1 Olea europaea HOM05D007779 ORTHO05D009863 5.5e-35 152.9 372 30.6
Migut.F01921 Erythranthe guttata HOM05D007779 ORTHO05D009863 1.8e-30 137.9 295 34.6
C09p72920 Brassica napus HOM05D007779 ORTHO05D009863 2.4e-30 137.5 154 42.2
Migut.H01240 Erythranthe guttata HOM05D007779 ORTHO05D009863 2.4e-30 137.5 297 34.3
C08p37280 Brassica napus HOM05D007779 ORTHO05D009863 2.3e-25 120.9 298 28.9
Migut.H00757 Erythranthe guttata HOM05D007779 ORTHO05D009863 1.8e-22 111.3 300 32.7
COL.COLO4_08350 Corchorus olitorius HOM05D007779 ORTHO05D009863 2.4e-22 110.9 416 25.7
BolC8t51306H Brassica oleracea HOM05D007779 ORTHO05D009863 5.9e-21 106.3 157 37.6
Migut.F02080 Erythranthe guttata HOM05D007779 ORTHO05D009863 5.9e-21 106.3 411 27.3
Rhsim08G0064700 Rhododendron simsii HOM05D007779 ORTHO05D009863 2.9e-20 104.0 403 26.1
Oeu062739.1 Olea europaea HOM05D007779 ORTHO05D009863 1.2e-18 98.6 261 31.0
Actinidia26989 Actinidia chinensis HOM05D007779 ORTHO05D010440 3.6e-18 97.1 300 27.3
COL.COLO4_08348 Corchorus olitorius HOM05D007779 ORTHO05D009863 3.3e-16 90.5 415 24.6
Migut.F02081 Erythranthe guttata HOM05D007779 ORTHO05D009863 9.7e-16 89.0 373 25.2
Lsat_1_v5_gn_0_16480 Lactuca sativa HOM05D008898 ORTHO05D001155 5.3e-14 83.2 400 23.5
Aqoxy5G01770 Aquilegia oxysepala HOM05D000664 ORTHO05D009863 6.9e-14 82.8 396 23.7
CSS0020895 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 1.2e-13 82.0 422 26.8
CSS0028413 Camellia sinensis var. sinensis HOM05D008898 ORTHO05D001155 2.6e-13 80.9 422 26.5
Sopen12g023120 Solanum pennellii HOM05D008706 ORTHO05D010440 1.4e-11 75.1 382 24.1
Dinv35017 Davidia involucrata HOM05D008898 ORTHO05D001155 1.9e-11 74.7 405 25.9
Solyc12g044775.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 1.9e-11 74.7 404 24.0
Sopen12g023130 Solanum pennellii HOM05D008706 ORTHO05D010440 2.5e-11 74.3 403 23.6
Sopen12g023140 Solanum pennellii HOM05D008706 ORTHO05D010440 2.5e-11 74.3 403 22.8
HanXRQChr15g0474341 Helianthus annuus HOM05D008898 ORTHO05D001155 3.2e-11 73.9 400 22.5
HanXRQChr15g0474331 Helianthus annuus HOM05D008898 ORTHO05D001155 4.2e-11 73.6 417 22.5
vmacro20454 Vaccinium macrocarpon HOM05D007779 ORTHO05D009863 4.2e-11 73.6 195 32.3
PSO210G6997 Papaver somniferum HOM05D000664 ORTHO05D000491 9.4e-11 72.4 379 23.2
Gohir.A09G096401 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.6e-10 71.6 412 23.3
Gohir.D09G096101 Gossypium hirsutum HOM05D001729 ORTHO05D001155 1.6e-10 71.6 403 24.3
Peaxi162Scf00347g00087 Petunia axillaris HOM05D008706 ORTHO05D010440 1.6e-10 71.6 421 24.9
Gorai.006G112800 Gossypium raimondii HOM05D001729 ORTHO05D001155 2.1e-10 71.2 412 23.5
TAR625G1137 Trochodendron aralioides HOM05D001729 ORTHO05D001155 2.7e-10 70.9 254 26.4
Solyc12g044790.1 Solanum lycopersicum HOM05D008706 ORTHO05D010440 1.4e-09 68.6 403 22.8
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 1.8e-09 68.2 326 25.5
PGR142G1547 Punica granatum HOM05D002743 ORTHO05D002895 1.8e-09 68.2 408 26.5
ClCG01G004670 Citrullus lanatus HOM05D000664 ORTHO05D000491 2.3e-09 67.8 242 27.3
CsaV3_1G024340 Cucumis sativus L. HOM05D002420 ORTHO05D002422 3.0e-09 67.4 413 22.3
Glyma.09G075900 Glycine max HOM05D001729 ORTHO05D001155 3.0e-09 67.4 441 23.6
CsaV3_1G028850 Cucumis sativus L. HOM05D002420 ORTHO05D002422 5.1e-09 66.6 413 22.3
Migut.F00976 Erythranthe guttata HOM05D007779 ORTHO05D009863 5.1e-09 66.6 135 31.9
Aqoxy2G02516 Aquilegia oxysepala HOM05D007779 ORTHO05D009863 6.7e-09 66.2 422 25.1
Gohir.D12G199200 Gossypium hirsutum HOM05D000664 ORTHO05D000491 6.7e-09 66.2 301 26.6
Peaxi162Scf00332g10026 Petunia axillaris HOM05D000664 ORTHO05D000491 6.7e-09 66.2 334 24.9
Duzib177G1156 Durio zibethinus HOM05D000664 ORTHO05D000491 8.8e-09 65.9 344 23.5
Aqoxy3G00170 Aquilegia oxysepala HOM05D015194 ORTHO05D009863 1.1e-08 65.5 418 23.4
QL08p059532 Quercus lobata HOM05D007779 ORTHO05D009863 1.1e-08 65.5 346 23.4
Os05g0269100 Oryza sativa ssp. japonica HOM05D009075 ORTHO05D011069 1.5e-08 65.1 373 22.3
Sabra09G0127200 Salix brachista HOM05D001729 ORTHO05D001155 2.0e-08 64.7 400 24.2
RcHm_v2.0_Chr4g0398111 Rosa chinensis HOM05D000664 ORTHO05D000491 2.6e-08 64.3 240 27.5
AUR62006003 Chenopodium quinoa HOM05D001729 ORTHO05D001155 3.3e-08 63.9 414 22.5
AUR62035623 Chenopodium quinoa HOM05D001729 ORTHO05D001155 3.3e-08 63.9 413 22.3
ClCG06G012330 Citrullus lanatus HOM05D000759 ORTHO05D000574 5.7e-08 63.2 419 21.7
GSVIVG01026445001 Vitis vinifera HOM05D002420 ORTHO05D002422 7.4e-08 62.8 303 24.4
Gorai.008G214400 Gossypium raimondii HOM05D000664 ORTHO05D000491 9.7e-08 62.4 302 26.5
PSO063G7655 Papaver somniferum HOM05D008326 ORTHO05D001155 9.7e-08 62.4 301 23.3
Peaxi162Scf00171g00214 Petunia axillaris HOM05D002420 ORTHO05D002422 1.3e-07 62.0 404 23.3
Prupe.8G110700 Prunus persica HOM05D001729 ORTHO05D001155 1.3e-07 62.0 460 20.0
Hund15878 Selenicereus undatus HOM05D001729 ORTHO05D001155 1.3e-07 62.0 435 22.1
Ciclev10005096m.g Citrus clementina HOM05D000664 ORTHO05D000491 1.7e-07 61.6 243 28.4
Duzib128G1279 Durio zibethinus HOM05D000664 ORTHO05D000491 1.7e-07 61.6 343 23.6
Nitab4.5_0011101g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.7e-07 61.6 271 24.7
TAR371G0827 Trochodendron aralioides HOM05D002420 ORTHO05D002422 1.7e-07 61.6 406 23.6
Lalb_Chr04g0264551 Lupinus albus HOM05D012242 ORTHO05D001155 2.8e-07 60.8 233 25.8
Peaxi162Scf00332g10027 Petunia axillaris HOM05D000664 ORTHO05D000491 2.8e-07 60.8 256 26.2
PGSC0003DMG400029956 Solanum tuberosum HOM05D000664 ORTHO05D000491 2.8e-07 60.8 256 23.4
ECA234G3302 Erigeron canadensis HOM05D000664 ORTHO05D000491 3.7e-07 60.5 122 33.6
Gohir.D07G047500 Gossypium hirsutum HOM05D000664 ORTHO05D000491 3.7e-07 60.5 407 22.6
Nn4g25094 Nelumbo nucifera HOM05D002420 ORTHO05D002422 3.7e-07 60.5 297 24.2
Peaxi162Scf00314g00026 Petunia axillaris HOM05D033978 ORTHO05D024718 3.7e-07 60.5 252 25.0
Aqoxy2G01152 Aquilegia oxysepala HOM05D000664 ORTHO05D000491 4.8e-07 60.1 389 25.2
CAN.G54.4 Capsicum annuum HOM05D000664 ORTHO05D000491 4.8e-07 60.1 261 23.0
Cc02_g04650 Coffea canephora HOM05D000664 ORTHO05D000491 4.8e-07 60.1 292 22.6
HanXRQChr03g0067811 Helianthus annuus HOM05D000664 ORTHO05D000491 4.8e-07 60.1 278 26.6
HanXRQChr17g0547181 Helianthus annuus HOM05D008898 ORTHO05D001155 4.8e-07 60.1 313 23.6
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 4.8e-07 60.1 235 26.8
Solyc12g044780.2 Solanum lycopersicum HOM05D008706 ORTHO05D010440 4.8e-07 60.1 305 22.6
Nitab4.5_0004217g0030 Nicotiana tabacum HOM05D000664 ORTHO05D000491 6.3e-07 59.7 267 25.1
Solyc07g015800.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 6.3e-07 59.7 291 24.1
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 6.3e-07 59.7 236 27.1
DCAR_014748 Daucus carota HOM05D002420 ORTHO05D002422 8.2e-07 59.3 286 25.2
HanXRQChr15g0474391 Helianthus annuus HOM05D008898 ORTHO05D001155 8.2e-07 59.3 268 24.6
FAN12G3310 Fragaria x ananassa HOM05D000664 ORTHO05D000491 1.1e-06 58.9 262 27.1
PSO782G2286 Papaver somniferum HOM05D002420 ORTHO05D002422 1.1e-06 58.9 105 32.4
Sabra15G0014700 Salix brachista HOM05D001729 ORTHO05D001155 1.1e-06 58.9 263 27.8
Gohir.D11G237600 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.4e-06 58.5 253 25.7
Gorai.007G251000 Gossypium raimondii HOM05D000664 ORTHO05D000491 1.4e-06 58.5 253 25.7
Nitab4.5_0000413g0140 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.4e-06 58.5 259 23.6
Nitab4.5_0002322g0160 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.4e-06 58.5 380 24.5
Potri.003G215900 Populus trichocarpa HOM05D000664 ORTHO05D000491 1.4e-06 58.5 239 27.6
Migut.L01260 Erythranthe guttata HOM05D001729 ORTHO05D001155 1.8e-06 58.2 294 22.8
FvH4_4g06960 Fragaria vesca HOM05D000664 ORTHO05D000491 1.8e-06 58.2 262 26.7
HanXRQChr16g0498261 Helianthus annuus HOM05D000664 ORTHO05D000491 1.8e-06 58.2 371 23.7
Lalb_Chr16g0386521 Lupinus albus HOM05D002420 ORTHO05D002422 1.8e-06 58.2 294 23.1
Os11g0166100 Oryza sativa ssp. japonica HOM05D008694 ORTHO05D010635 1.8e-06 58.2 400 24.0
Cc04_g08540 Coffea canephora HOM05D002420 ORTHO05D002422 2.4e-06 57.8 294 22.8
MELO3C005495.2 Cucumis melo HOM05D000664 ORTHO05D000491 2.4e-06 57.8 224 24.1
FAN22G1400 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.4e-06 57.8 242 26.4
Gohir.A11G224210 Gossypium hirsutum HOM05D000664 ORTHO05D000491 2.4e-06 57.8 264 25.0
Nitab4.5_0002715g0090 Nicotiana tabacum HOM05D008706 ORTHO05D010440 2.4e-06 57.8 382 22.8
Nitab4.5_0004217g0020 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.4e-06 57.8 211 25.1
COL.COLO4_34020 Corchorus olitorius HOM05D001729 ORTHO05D001155 3.1e-06 57.4 390 22.8
COL.COLO4_38551 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.1e-06 57.4 374 20.6
Thecc.05G237900 Theobroma cacao HOM05D000664 ORTHO05D000491 3.1e-06 57.4 257 26.1
PSO761G0401 Papaver somniferum HOM05D008326 ORTHO05D001155 4.1e-06 57.0 258 25.6
Rhsim03G0162000 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.1e-06 57.0 257 24.5
PGSC0003DMG400025009 Solanum tuberosum HOM05D008898 ORTHO05D001155 4.1e-06 57.0 306 20.9
TAR626G1239 Trochodendron aralioides HOM05D000664 ORTHO05D000491 4.1e-06 57.0 253 24.5
ECA236G0999 Erigeron canadensis HOM05D000664 ORTHO05D000491 5.3e-06 56.6 251 25.9
TAR626G1986 Trochodendron aralioides HOM05D000664 ORTHO05D000491 5.3e-06 56.6 232 23.3
vmacro09289 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.3e-06 56.6 312 26.3
vmacro22920 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 5.3e-06 56.6 312 26.3
Lj5P697T4 Lonicera japonica HOM05D000664 ORTHO05D000491 7.0e-06 56.2 341 20.5
PSO063G5348 Papaver somniferum HOM05D002420 ORTHO05D002422 7.0e-06 56.2 103 31.1
Potri.018G132800 Populus trichocarpa HOM05D000664 ORTHO05D000491 7.0e-06 56.2 241 26.6
CAN.G1110.53 Capsicum annuum HOM05D001729 ORTHO05D001155 9.1e-06 55.8 309 21.7
Sc23g0006800 Simmondsia chinensis HOM05D000664 ORTHO05D000491 9.1e-06 55.8 203 28.1
Sopen10g002860 Solanum pennellii HOM05D008898 ORTHO05D001155 9.1e-06 55.8 306 20.9


User provided reference genes

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