Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G6992 Trifolium pratense HOM05D000219 ORTHO05D004649 3.6e-312 1074.3 520 100.0
Medtr7g115250 Medicago truncatula HOM05D000219 ORTHO05D004649 1.7e-288 995.3 520 91.9
Psat7g054840 Pisum sativum HOM05D000219 ORTHO05D004649 7.6e-281 969.9 514 90.1
Psat0s1144g0040 Pisum sativum HOM05D000219 ORTHO05D004649 1.0e-280 969.5 509 91.2
Ca_09426_v3 Cicer arietinum L. HOM05D000219 ORTHO05D004649 7.1e-279 963.4 521 88.9
Lj5g0005884 Lotus japonicus HOM05D000219 ORTHO05D004649 8.2e-259 896.7 511 83.0
VMungo0720G2488 Vigna mungo HOM05D000219 ORTHO05D004649 3.3e-252 874.8 511 80.4
Glyma.10G001600 Glycine max HOM05D000219 ORTHO05D004649 1.6e-249 865.9 511 80.2
Glyma.16G091600 Glycine max HOM05D000219 ORTHO05D004649 2.5e-247 858.6 510 79.8
Phvul.010G125700 Phaseolus vulgaris HOM05D000219 ORTHO05D004649 6.3e-243 844.0 511 78.1
Lj6g0002222 Lotus japonicus HOM05D000219 ORTHO05D004649 8.3e-243 843.6 485 82.5
Lalb_Chr11g0075091 Lupinus albus HOM05D000219 ORTHO05D004649 1.4e-242 842.8 521 77.9
arahy.Tifrunner.gnm1.ann1.V7J6Z4 Arachis hypogaea HOM05D000219 ORTHO05D004649 1.8e-237 825.9 504 77.8
arahy.Tifrunner.gnm1.ann1.M2QW19 Arachis hypogaea HOM05D000219 ORTHO05D004649 6.8e-237 823.9 504 77.2
GSVIVG01022253001 Vitis vinifera HOM05D000219 ORTHO05D004649 9.9e-196 687.2 528 61.2
QL06p031679 Quercus lobata HOM05D000219 ORTHO05D004649 1.4e-194 683.3 530 61.3
Ciclev10027573m.g Citrus clementina HOM05D000219 ORTHO05D004649 9.3e-194 680.6 525 61.0
TAR625G1522 Trochodendron aralioides HOM05D000219 ORTHO05D004649 1.6e-193 679.9 526 62.7
CSS0031787 Camellia sinensis var. sinensis HOM05D000219 ORTHO05D004649 1.6e-190 669.8 527 61.5
Dinv19467 Davidia involucrata HOM05D000219 ORTHO05D004649 4.8e-190 668.3 482 65.4
Cfa002771 Carpinus fangiana HOM05D000219 ORTHO05D004649 3.1e-189 665.6 527 61.1
Prupe.1G573900 Prunus persica HOM05D000219 ORTHO05D004649 4.0e-189 665.2 521 60.8
TWI79G1233 Tripterygium wilfordii HOM05D000219 ORTHO05D004649 2.0e-188 662.9 532 58.8
CANSAT64G2196 Cannabis sativa HOM05D000219 ORTHO05D004649 2.6e-188 662.5 526 61.4
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 1.3e-187 660.2 524 60.1
Cc07_g16490 Coffea canephora HOM05D000219 ORTHO05D004649 6.4e-187 657.9 525 58.9
Oeu035604.1 Olea europaea HOM05D000219 ORTHO05D004649 6.4e-187 657.9 532 59.2
Potri.002G233300 Populus trichocarpa HOM05D000219 ORTHO05D004649 1.1e-186 657.1 523 61.4
CiPaw.15G021800 Carya illinoinensis HOM05D000219 ORTHO05D004649 7.1e-186 654.4 529 59.2
FvH4_1g22971 Fragaria vesca HOM05D000219 ORTHO05D004649 9.3e-186 654.1 522 60.0
Oeu027201.4 Olea europaea HOM05D000219 ORTHO05D004649 9.3e-186 654.1 532 59.0
MD05G1030700 Malus domestica HOM05D000219 ORTHO05D004649 2.7e-185 652.5 521 60.3
FvH4_2g15830 Fragaria vesca HOM05D000219 ORTHO05D004649 6.0e-185 651.4 521 59.7
FAN24G0946 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.0e-184 650.6 521 59.5
SGA_v2.0_scaffold2G01286 Striga asiatica HOM05D000219 ORTHO05D004649 2.3e-184 649.4 531 58.9
Carub.0004s1368 Capsella rubella HOM05D000219 ORTHO05D004649 3.9e-184 648.7 525 59.2
THA.LOC104800903 Tarenaya hassleriana HOM05D000219 ORTHO05D004649 6.6e-184 647.9 524 60.1
MSTRG.2524 Avicennia marina HOM05D000219 ORTHO05D004649 8.7e-184 647.5 528 58.1
Duzib235G0760 Durio zibethinus HOM05D000219 ORTHO05D004649 7.3e-183 644.4 525 60.2
Sed0023684 Sechium edule HOM05D000219 ORTHO05D004649 1.3e-182 643.7 524 58.2
Carub.0004s1193 Capsella rubella HOM05D000219 ORTHO05D004649 1.6e-182 643.3 527 57.7
Gorai.009G178600 Gossypium raimondii HOM05D000219 ORTHO05D004649 1.6e-182 643.3 525 59.8
HanXRQChr10g0311141 Helianthus annuus HOM05D000219 ORTHO05D004649 2.8e-182 642.5 523 58.9
COL.COLO4_16836 Corchorus olitorius HOM05D000219 ORTHO05D004649 3.6e-182 642.1 529 59.2
Eucgr.H04885 Eucalyptus grandis HOM05D000219 ORTHO05D004649 3.6e-182 642.1 522 59.8
Sopen04g022970 Solanum pennellii HOM05D000219 ORTHO05D004649 3.6e-182 642.1 524 59.4
SalBow6G5746 Salvia bowleyana HOM05D000219 ORTHO05D004649 1.1e-181 640.6 527 57.7
Sp4g14010 Schrenkiella parvula HOM05D000219 ORTHO05D004649 1.1e-181 640.6 526 58.6
Gohir.A05G170300 Gossypium hirsutum HOM05D000219 ORTHO05D004649 1.4e-181 640.2 525 59.8
AT2G32320 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 4.0e-181 638.6 524 58.2
CsaV3_6G042230 Cucumis sativus L. HOM05D000219 ORTHO05D004649 4.0e-181 638.6 523 57.6
Thhalv10016524m.g Eutrema salsugineum HOM05D000219 ORTHO05D004649 5.3e-181 638.3 523 59.7
FAN20G1304 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.6e-180 636.0 521 58.3
Actinidia39311 Actinidia chinensis HOM05D000219 ORTHO05D004649 9.9e-180 634.0 524 58.4
A03p17780 Brassica napus HOM05D000219 ORTHO05D004649 1.3e-179 633.6 526 58.0
FAN15G1293 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.3e-179 633.6 521 58.3
Manes.11G020000 Manihot esculenta HOM05D000219 ORTHO05D004649 1.7e-179 633.3 478 61.9
Aa31LG5G4650 Aethionema arabicum HOM05D000219 ORTHO05D004649 4.9e-179 631.7 479 63.0
Rhsim10G0148200 Rhododendron simsii HOM05D000219 ORTHO05D004649 6.4e-179 631.3 532 58.3
Carub.0004s1289 Capsella rubella HOM05D000219 ORTHO05D004649 1.1e-178 630.6 522 57.9
AL4G26840 Arabidopsis lyrata HOM05D000219 ORTHO05D004649 1.4e-178 630.2 524 57.4
BcaC02g11270 Brassica carinata HOM05D000219 ORTHO05D004649 1.4e-178 630.2 526 58.6
FAN23G1549 Fragaria x ananassa HOM05D000219 ORTHO05D004649 2.4e-178 629.4 489 61.1
BcaB02g10403 Brassica carinata HOM05D000219 ORTHO05D004649 3.2e-178 629.0 526 58.4
DCAR_027131 Daucus carota HOM05D000219 ORTHO05D004649 3.2e-178 629.0 523 57.0
C04p18270 Brassica napus HOM05D000219 ORTHO05D004649 9.3e-178 627.5 528 58.5
C03p20860 Brassica napus HOM05D000219 ORTHO05D004649 1.6e-177 626.7 526 57.4
A05p13880 Brassica napus HOM05D000219 ORTHO05D004649 3.0e-176 622.5 532 57.3
Lj8A365T11 Lonicera japonica HOM05D000219 ORTHO05D004649 3.0e-176 622.5 524 57.4
Peaxi162Scf00106g01118 Petunia axillaris HOM05D000219 ORTHO05D004649 3.0e-176 622.5 532 56.8
Hma1.2p1_0975F.1_g243180 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 3.9e-176 622.1 523 57.2
CAN.G1235.19 Capsicum annuum HOM05D000219 ORTHO05D004649 1.3e-174 617.1 524 57.1
BraA03t11042Z Brassica rapa HOM05D000219 ORTHO05D004649 3.7e-174 615.5 550 55.3
Sabra02G0178000 Salix brachista HOM05D000219 ORTHO05D004649 6.2e-174 614.8 612 51.5
BolC4t23384H Brassica oleracea HOM05D000219 ORTHO05D004649 1.4e-173 613.6 555 55.7
ClCG01G015950 Citrullus lanatus HOM05D000219 ORTHO05D004649 3.1e-173 612.5 548 54.2
unitig_899.g14613 Utricularia gibba HOM05D000219 ORTHO05D004649 4.0e-173 612.1 531 55.4
MELO3C007464.2 Cucumis melo HOM05D000219 ORTHO05D004649 1.5e-172 610.1 525 55.4
FAN26G0146 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.5e-172 610.1 480 61.0
BolC3t14438H Brassica oleracea HOM05D000219 ORTHO05D004649 2.0e-172 609.8 556 54.1
BraA05t20324Z Brassica rapa HOM05D000219 ORTHO05D004649 2.0e-172 609.8 559 54.4
Hund21266 Selenicereus undatus HOM05D000219 ORTHO05D004649 2.9e-171 605.9 506 55.9
Sc05g0007990 Simmondsia chinensis HOM05D000219 ORTHO05D004649 6.0e-169 598.2 527 55.2
Gohir.D05G173400 Gossypium hirsutum HOM05D000219 ORTHO05D004649 3.0e-168 595.9 472 60.4
Thecc.06G220500 Theobroma cacao HOM05D000219 ORTHO05D004649 3.9e-168 595.5 449 63.5
Solyc04g051600.4 Solanum lycopersicum HOM05D000219 ORTHO05D004649 3.7e-166 589.0 491 58.9
FAN27G2048 Fragaria x ananassa HOM05D000219 ORTHO05D004649 1.2e-164 583.9 521 55.3
CARHR008820 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.5e-164 583.6 472 58.9
Nn1g05995 Nelumbo nucifera HOM05D000219 ORTHO05D004649 5.8e-164 581.6 529 54.3
Atru.chr10.1102 Acer truncatum HOM05D000219 ORTHO05D004649 1.9e-162 576.6 435 63.4
AUR62016924 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.0e-160 569.3 525 52.8
Nitab4.5_0000184g0150 Nicotiana tabacum HOM05D000219 ORTHO05D004649 3.0e-160 569.3 524 55.2
Haze_25064 Corylus avellana HOM05D000219 ORTHO05D004649 4.3e-159 565.5 565 52.4
Nitab4.5_0009050g0040 Nicotiana tabacum HOM05D000219 ORTHO05D004649 2.2e-158 563.1 524 54.4
AUR62010269 Chenopodium quinoa HOM05D000219 ORTHO05D004649 3.7e-158 562.4 525 51.6
AUR62013249 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.2e-156 557.4 525 51.4
Hma1.2p1_0252F.1_g102800 Hydrangea macrophylla HOM05D000219 ORTHO05D004649 8.5e-155 551.2 462 58.0
AT2G31580 Arabidopsis thaliana HOM05D000219 ORTHO05D004649 4.6e-153 545.4 418 61.0
vmacro12890 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 1.7e-150 537.0 697 43.9
RcHm_v2.0_Chr2g0117491 Rosa chinensis HOM05D000219 ORTHO05D004649 8.2e-150 534.6 413 59.6
COL.COLO4_17688 Corchorus olitorius HOM05D000219 ORTHO05D004649 1.8e-141 506.9 400 60.8
Lsat_1_v5_gn_7_9060 Lactuca sativa HOM05D000219 ORTHO05D004649 7.7e-140 501.5 519 50.5
CAN.G1044.3 Capsicum annuum HOM05D000219 ORTHO05D004649 4.0e-136 489.2 417 58.0
vmacro14893 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.3e-135 486.1 591 47.0
PGR102G3329 Punica granatum HOM05D000219 ORTHO05D004649 4.1e-133 479.2 421 54.6
Lj7C160G16 Lonicera japonica HOM05D000219 ORTHO05D004649 2.8e-126 456.4 375 57.6
PGSC0003DMG400031193 Solanum tuberosum HOM05D000219 ORTHO05D004649 3.1e-125 453.0 483 49.9
Os05g0535500 Oryza sativa ssp. japonica HOM05D000219 ORTHO05D004649 1.0e-123 448.0 523 43.8
Atru.chr10.1005 Acer truncatum HOM05D000219 ORTHO05D004649 3.2e-122 443.0 410 55.6
Migut.B00934 Erythranthe guttata HOM05D000219 ORTHO05D004649 1.0e-120 438.0 384 56.0
Glyma.16G117567 Glycine max HOM05D000219 ORTHO05D004649 3.0e-112 409.8 235 82.6
EL10Ac8g20632 Beta vulgaris HOM05D000219 ORTHO05D004649 1.1e-106 391.3 524 42.6
TAR628G0592 Trochodendron aralioides HOM05D000219 ORTHO05D004649 3.6e-105 386.3 310 58.4
Haze_08455 Corylus avellana HOM05D000219 ORTHO05D004649 1.2e-103 381.3 345 56.2
MBI04_g33333_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.4e-96 357.8 257 66.5
Atru.chr10.1697 Acer truncatum HOM05D000219 ORTHO05D004649 2.9e-94 350.1 300 57.3
CANSAT01G1436 Cannabis sativa HOM05D000219 ORTHO05D004649 2.3e-91 340.5 264 58.7
PSO782G0604 Papaver somniferum HOM05D000219 ORTHO05D004649 1.5e-90 337.8 257 61.1
HPP92_021547 Vanilla planifolia HOM05D000219 ORTHO05D004649 7.6e-87 325.5 257 61.9
Aqoxy2G01146 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 2.3e-83 313.9 258 58.5
Glyma.16G117633 Glycine max HOM05D000219 ORTHO05D004649 8.6e-83 312.0 197 75.1
Aqoxy3G01228 Aquilegia oxysepala HOM05D000219 ORTHO05D004649 9.6e-82 308.5 258 57.4
PSO063G1486 Papaver somniferum HOM05D000219 ORTHO05D004649 1.1e-80 305.1 302 51.0
ATR0322G032 Amborella trichopoda HOM05D000219 ORTHO05D004649 1.3e-78 298.1 259 56.4
PSO541G5787 Papaver somniferum HOM05D000219 ORTHO05D004649 1.3e-78 298.1 213 64.3
MBI05_g03455_MAGBIO Magnolia biondii HOM05D000219 ORTHO05D004649 1.9e-77 294.3 223 62.3
Pp3c1_10760 Physcomitrium patens HOM05D000219 ORTHO05D004649 7.8e-76 288.9 257 54.1
RcHm_v2.0_Chr6g0279211 Rosa chinensis HOM05D000219 ORTHO05D004649 1.7e-75 287.7 261 55.2
Zm00001eb294000 Zea mays HOM05D000219 ORTHO05D004649 2.3e-75 287.3 357 41.7
PSO063G0175 Papaver somniferum HOM05D000219 ORTHO05D004649 3.9e-75 286.6 257 55.6
Mapoly0167s0023 Marchantia polymorpha HOM05D000219 ORTHO05D004649 1.1e-74 285.0 254 53.5
AagrBONN_evm.TU.Sc2ySwM_117.2004 Anthoceros agrestis HOM05D000219 ORTHO05D004649 4.8e-73 279.6 260 53.5
CDE06G2407 Ceratophyllum demersum HOM05D000219 ORTHO05D004649 4.4e-71 273.1 226 59.7
CBR_g11164 Chara braunii HOM05D000219 ORTHO05D004649 2.4e-69 267.3 218 57.8
Cre13.g581550 Chlamydomonas reinhardtii HOM05D000219 ORTHO05D004649 2.8e-65 253.8 256 52.0
TAR628G0698 Trochodendron aralioides HOM05D000219 ORTHO05D004649 9.9e-63 245.4 199 61.8
AUR62014746 Chenopodium quinoa HOM05D000219 ORTHO05D004649 1.6e-60 238.0 253 47.8
Atru.chr10.1696 Acer truncatum HOM05D000219 ORTHO05D004649 5.6e-58 229.6 143 73.4
PRCOL_00002092 Prasinoderma coloniale HOM05D000219 ORTHO05D004649 5.6e-58 229.6 257 47.9
SMO146G0027 Selaginella moellendorffii HOM05D000219 ORTHO05D004649 7.4e-58 229.2 261 46.0
SHI31711 Sapria himalayana HOM05D000219 ORTHO05D004649 2.9e-54 217.2 169 57.4
HPP92_021534 Vanilla planifolia HOM05D000219 ORTHO05D004649 6.7e-51 206.1 176 58.5
Cfa023086 Carpinus fangiana HOM05D000219 ORTHO05D004649 1.5e-50 204.9 248 44.4
HanXRQChr10g0318971 Helianthus annuus HOM05D000219 ORTHO05D004649 9.6e-50 202.2 164 61.6
HPP92_021538 Vanilla planifolia HOM05D000219 ORTHO05D004649 6.1e-44 183.0 219 46.1
vmacro14894 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 7.9e-44 182.6 281 41.6
PGSC0003DMG402004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 1.9e-42 177.9 147 56.5
Sopen04g022950 Solanum pennellii HOM05D000219 ORTHO05D000001 2.4e-40 171.0 147 56.5
Haze_26924 Corylus avellana HOM05D000219 ORTHO05D004649 2.7e-36 157.5 170 44.7
CARHR125230 Cardamine hirsuta HOM05D000219 ORTHO05D004649 3.9e-35 153.7 111 61.3
SHI31709 Sapria himalayana HOM05D000219 ORTHO05D004649 2.0e-34 151.4 112 65.2
AagrBONN_evm.TU.Sc2ySwM_344.3315 Anthoceros agrestis HOM05D000219 ORTHO05D004649 2.4e-32 144.4 128 53.9
HanXRQChr10g0318981 Helianthus annuus HOM05D000219 ORTHO05D004649 1.4e-27 128.6 123 48.8
Cpa.g.c44268 Carica papaya HOM05D000219 ORTHO05D004649 1.1e-26 125.6 70 75.7
vmacro13881 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 3.3e-26 124.0 100 59.0
Lj7A96G45 Lonicera japonica HOM05D000219 ORTHO05D004649 1.3e-25 122.1 104 56.7
GSVIVG01006301001 Vitis vinifera HOM05D000026 ORTHO05D000127 9.1e-24 115.9 101 55.4
RcHm_v2.0_Chr2g0117501 Rosa chinensis HOM05D000219 ORTHO05D004649 3.5e-23 114.0 92 58.7
CAN.G555.5 Capsicum annuum HOM05D000219 ORTHO05D000137 3.8e-22 110.5 81 60.5
vmacro20266 Vaccinium macrocarpon HOM05D000219 ORTHO05D004649 5.0e-22 110.2 221 34.8
HanXRQChr10g0319001 Helianthus annuus HOM05D000219 ORTHO05D004649 1.8e-19 101.7 93 59.1
Lj7A96T47 Lonicera japonica HOM05D000219 ORTHO05D004649 3.0e-19 100.9 59 74.6
Nitab4.5_0005102g0050 Nicotiana tabacum HOM05D000219 ORTHO05D004649 4.0e-19 100.5 79 62.0
PGSC0003DMG400016550 Solanum tuberosum HOM05D000219 ORTHO05D004649 6.7e-19 99.8 91 56.0
PGSC0003DMG400020961 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.9e-14 84.3 46 80.4
CARHR125240 Cardamine hirsuta HOM05D000219 ORTHO05D004649 1.9e-13 81.6 107 42.1
Atru.chr10.1103 Acer truncatum HOM05D000219 ORTHO05D004649 2.1e-12 78.2 59 55.9
HanXRQChr10g0318991 Helianthus annuus HOM05D000219 ORTHO05D021059 2.1e-12 78.2 65 50.8
Actinidia05378 Actinidia chinensis HOM05D000219 ORTHO05D004649 4.7e-12 77.0 51 64.7
Atru.chr10.1695 Acer truncatum HOM05D000219 ORTHO05D021059 2.6e-10 71.2 82 42.7
AL4G27720 Arabidopsis lyrata HOM05D000219 ORTHO05D021059 9.8e-10 69.3 94 44.7
A07p24800 Brassica napus HOM05D000219 ORTHO05D017689 8.3e-09 66.2 71 42.3
BraA03t15335Z Brassica rapa HOM05D000219 ORTHO05D017689 8.3e-09 66.2 71 42.3
A02p19800 Brassica napus HOM05D000219 ORTHO05D017689 1.1e-08 65.9 71 42.3
PGSC0003DMG401004545 Solanum tuberosum HOM05D000219 ORTHO05D004649 2.4e-08 64.7 57 50.9
C09p23930 Brassica napus HOM05D000219 ORTHO05D017689 7.0e-08 63.2 71 40.8
C09p21500 Brassica napus HOM05D000352 ORTHO05D000260 3.5e-07 60.8 48 64.6
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 7.7e-07 59.7 43 65.1
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 1.3e-06 58.9 47 59.6
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 1.3e-06 58.9 47 59.6
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 1.3e-06 58.9 47 59.6
BolC3t16144H Brassica oleracea HOM05D012973 ORTHO05D016770 1.7e-06 58.5 41 65.9
SHI31712 Sapria himalayana HOM05D000219 ORTHO05D366583 2.9e-06 57.8 37 62.2
Lj7A96T46 Lonicera japonica HOM05D000219 ORTHO05D004649 5.0e-06 57.0 45 55.6


User provided reference genes

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